Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABP1 26 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150554402 150554402 + Missense_Mutation SNP T T C novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e ALS2 57679 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 202590152 202590152 + Missense_Mutation SNP T T C novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e AMN 81693 broad.mit.edu 37 14 103394801 103394801 + Silent SNP A T T novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e AOC2 314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40997011 40997011 + Missense_Mutation SNP T T C novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e AP4E1 23431 hgsc.bcm.edu;ucsc.edu 37 15 51276219 51276221 + Frame_Shift_Del DEL TTC TTC - novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 TTC TTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e BTG1 694 broad.mit.edu;hgsc.bcm.edu 37 12 92539272 92539272 + Missense_Mutation SNP C C T novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e C2orf78 388960 broad.mit.edu;ucsc.edu 37 2 74043728 74043728 + Missense_Mutation SNP A C C novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e CACNG3 10368 broad.mit.edu;ucsc.edu 37 16 24268220 24268220 + Missense_Mutation SNP G A A novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e CAMSAP1 157922 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 138703212 138703212 + Silent SNP G G A novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e CCDC40 55036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 78059827 78059827 + Missense_Mutation SNP T T A novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e CLTC 1213 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 57737836 57737836 + Missense_Mutation SNP G G A novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e COMMD9 29099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 36302301 36302301 + Silent SNP T T G novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e CRHBP 1393 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 76249908 76249908 + Missense_Mutation SNP C C T rs79810800 TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e DDC 1644 broad.mit.edu 37 7 50607651 50607651 + Missense_Mutation SNP T C C novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e DMXL2 23312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51837940 51837940 + Nonsense_Mutation SNP A A C novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e LOC284232 0 broad.mit.edu 37 13 19413033 19413033 + RNA SNP G A A rs78610290 TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e LRP1B 53353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 141143576 141143576 + Missense_Mutation SNP T T C novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e LRRC8B 23507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 90049715 90049715 + Silent SNP C C T novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e LYSMD4 145748 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 100269538 100269538 + Silent SNP C C T rs150607972 TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e MAGI2 9863 hgsc.bcm.edu 37 7 77998512 77998513 + Frame_Shift_Ins INS - - C novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e MALAT1 378938 broad.mit.edu;hgsc.bcm.edu 37 11 65272965 65272965 + RNA SNP T T C novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e MLL3 58508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 151879304 151879304 + Missense_Mutation SNP C C G novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e MRPL15 29088 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 55055338 55055338 + Missense_Mutation SNP G G A novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e MSN 4478 broad.mit.edu 37 X 64958995 64958995 + Missense_Mutation SNP G A A novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e NLRC5 84166 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 57060312 57060312 + Missense_Mutation SNP C C G novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e OR4K1 79544 broad.mit.edu;hgsc.bcm.edu 37 14 20403973 20403973 + Missense_Mutation SNP T T A novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e OR4K1 79544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 20404157 20404157 + Missense_Mutation SNP A A G novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e OSBPL10 114884 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 31774806 31774806 + Silent SNP G G T novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e PAX1 5075 broad.mit.edu 37 20 21690005 21690005 + Missense_Mutation SNP C T T novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e PI16 221476 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 36922553 36922553 + Missense_Mutation SNP G G T novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e POLE 5426 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 133220012 133220012 + Missense_Mutation SNP C C G novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e PRDX1 5052 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 45984673 45984673 + Missense_Mutation SNP A A G novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e REPS1 85021 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 139233902 139233902 + Silent SNP C C T novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e RP1L1 94137 hgsc.bcm.edu 37 8 10467605 10467605 + Missense_Mutation SNP C C T rs61503212 bycluster TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e RSU1 6251 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 16737058 16737058 + Missense_Mutation SNP T T A novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e SFRS15 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 33043798 33043798 + Nonsense_Mutation SNP T T A novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e SLC23A1 9963 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 138707793 138707793 + Missense_Mutation SNP C C A novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e SLC25A4 291 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 186066922 186066922 + Missense_Mutation SNP C C G novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e SLC2A10 81031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 45355557 45355557 + Missense_Mutation SNP T T A novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e SLFN11 91607 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 33679558 33679558 + Silent SNP T T C novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e SNX18 112574 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 53814577 53814577 + Nonsense_Mutation SNP T T A novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e SORBS1 10580 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 97135759 97135759 + Missense_Mutation SNP A A G novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e TBCK 93627 broad.mit.edu;hgsc.bcm.edu 37 4 107157650 107157650 + Missense_Mutation SNP C C T novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e TIAM1 7074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 32638828 32638828 + Missense_Mutation SNP G G A novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e USP9X 8239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 41091721 41091721 + Missense_Mutation SNP C C G novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e ZNF2 7549 hgsc.bcm.edu;ucsc.edu 37 2 95847736 95847736 + Frame_Shift_Del DEL A A - novel TCGA-A3-3370-01A-02D-1421-08 TCGA-A3-3370-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 21ce7121-87b4-4686-9bf6-aff71d8b2223 969705aa-a77d-4084-a692-59819d33068e