Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADD2 119 hgsc.bcm.edu 37 2 70933488 70933489 + Frame_Shift_Ins INS - - G novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 AFAP1L2 84632 hgsc.bcm.edu;ucsc.edu 37 10 116075322 116075322 + Frame_Shift_Del DEL A A - novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 AQP9 366 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 58471498 58471498 + Missense_Mutation SNP C C T novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 ARAP1 116985 hgsc.bcm.edu 37 11 72407643 72407644 + Frame_Shift_Ins INS - - C novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 ATF7IP 55729 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 14578241 14578241 + Missense_Mutation SNP T T G novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 ATP13A3 79572 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 194149610 194149610 + Missense_Mutation SNP T T A novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 BCL11B 64919 broad.mit.edu 37 14 99641544 99641546 + In_Frame_Del DEL CTC - - novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 CTC CTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 C14orf126 0 broad.mit.edu;hgsc.bcm.edu 37 14 31917639 31917639 + Missense_Mutation SNP T T A novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 C1orf156 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169762230 169762230 + Missense_Mutation SNP T T G novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 C3orf63 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 56667576 56667576 + Missense_Mutation SNP C C A novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 CD101 9398 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 117564261 117564261 + Missense_Mutation SNP T T C novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 CHAF1A 10036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 4408962 4408962 + Missense_Mutation SNP G G T rs61729782 alternate_allele TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 CTGF 1490 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 132270523 132270523 + Missense_Mutation SNP C C T novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 CYP2D6 1565 hgsc.bcm.edu 37 22 42524814 42524814 + Missense_Mutation SNP A A G rs5758599 TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 CYP8B1 1582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 42917124 42917124 + Missense_Mutation SNP G G C novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 DAAM1 23002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 59835514 59835514 + Silent SNP A A G novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 DDX12 0 broad.mit.edu 37 12 9571406 9571406 + Missense_Mutation SNP C T T novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 DIAPH2 1730 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 96369939 96369939 + Missense_Mutation SNP G G C novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 DMD 1756 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 32862975 32862975 + Silent SNP T T C novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 DYNC1H1 1778 broad.mit.edu 37 14 102431128 102431132 + Frame_Shift_Del DEL CTGCG - - novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 CTGCG CTGCG . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 EEA1 8411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 93210026 93210026 + Missense_Mutation SNP T T G novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 EHBP1 23301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 63169917 63169917 + Nonsense_Mutation SNP G G A novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 EIF3A 8661 broad.mit.edu;hgsc.bcm.edu 37 10 120801706 120801706 + Missense_Mutation SNP G G A novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 EIF3A 8661 broad.mit.edu;hgsc.bcm.edu 37 10 120801712 120801712 + Missense_Mutation SNP C C T novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 EIF5A 1984 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7214802 7214802 + Splice_Site SNP T T C novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 ELOVL2 54898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 11005769 11005769 + Missense_Mutation SNP T T G novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 FNIP2 57600 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 159750366 159750366 + Missense_Mutation SNP C C G novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 JOSD2 126119 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51010902 51010902 + Missense_Mutation SNP G G T novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 KIF26A 26153 broad.mit.edu 37 14 104643367 104643367 + Silent SNP G A A novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 LOC284232 0 broad.mit.edu 37 13 19420047 19420053 + RNA DEL TTCGTAT - - rs78241386 alternate_allele TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 TTCGTAT TTCGTAT . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 MAP2 4133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 210561004 210561004 + Silent SNP C C T rs147926728 TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 MAPK8IP3 23162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1793404 1793404 + Missense_Mutation SNP G G A novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 MBD5 55777 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 149227852 149227852 + Silent SNP T T G novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 MFHAS1 9258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 8749927 8749927 + Missense_Mutation SNP G G C novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 MMS22L 253714 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 97702455 97702455 + Missense_Mutation SNP C C A novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 NCOA3 8202 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 46256718 46256718 + Missense_Mutation SNP A A T novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 NOL10 79954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 10811743 10811743 + Frame_Shift_Del DEL G G - novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52682446 52682446 + Nonsense_Mutation SNP T T A novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 PICALM 8301 hgsc.bcm.edu;ucsc.edu 37 11 85742542 85742550 + In_Frame_Del DEL GTAATGAGA GTAATGAGA - novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 GTAATGAGA GTAATGAGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 PLA2G4E 123745 hgsc.bcm.edu 37 15 42302330 42302331 + In_Frame_Ins INS - - CCC novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 PLIN4 729359 hgsc.bcm.edu 37 19 4511539 4511539 + Missense_Mutation SNP C C G rs111868968 bycluster;byfrequency;alternate_allele TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 POM121C 100101267 broad.mit.edu;hgsc.bcm.edu 37 7 75066894 75066894 + Missense_Mutation SNP A A G novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 PRPF31 26121 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54625914 54625914 + Silent SNP A A C novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 R3HDML 140902 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 42965937 42965937 + Missense_Mutation SNP T T C novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 RBM12 10137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 34242653 34242653 + Missense_Mutation SNP A A G novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 SCN1A 6323 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 166898839 166898839 + Silent SNP T T C novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 SH3TC1 54436 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 8224578 8224578 + Missense_Mutation SNP C C T novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 SIRPD 128646 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 1532510 1532510 + Missense_Mutation SNP A A G novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 SLC15A2 6565 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 121647359 121647359 + Missense_Mutation SNP A A C novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 SLC25A20 788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 48900024 48900024 + Silent SNP C C T novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 SLC38A9 153129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 54965131 54965131 + Missense_Mutation SNP T T G novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 SLC46A3 283537 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 29287320 29287320 + Missense_Mutation SNP G G A novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 SLC8A1 6546 broad.mit.edu;hgsc.bcm.edu 37 2 40342426 40342426 + Silent SNP G G A novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 SRGAP1 57522 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 64536075 64536075 + Missense_Mutation SNP G G C novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 SRSF2IP 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 46328263 46328263 + Silent SNP T T C novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 SYT7 9066 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61323583 61323583 + Missense_Mutation SNP C C G novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 TARS 6897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 33467768 33467768 + Missense_Mutation SNP G G T novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 TFDP2 7029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 141697381 141697381 + Missense_Mutation SNP T T G novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T T G T T Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 TLR4 7099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 120476405 120476405 + Missense_Mutation SNP T T A novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 TMEM206 55248 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 212538685 212538685 + Missense_Mutation SNP G G T novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 TNKS2 80351 hgsc.bcm.edu;ucsc.edu 37 10 93622703 93622703 + Frame_Shift_Del DEL G G - novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 TRIM32 22954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 119460981 119460981 + Silent SNP T T C novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 TUFM 7284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 28857318 28857318 + Silent SNP G G A novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 UGT2B11 10720 broad.mit.edu;hgsc.bcm.edu 37 4 70066177 70066177 + Missense_Mutation SNP T T G novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 Unknown 0 broad.mit.edu 37 5 17354457 17354457 + RNA SNP T A A novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 Unknown 0 broad.mit.edu 37 5 28927394 28927394 + RNA SNP C T T novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 UTRN 7402 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 144806603 144806603 + Missense_Mutation SNP A A G novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 VAV2 7410 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 136642527 136642527 + Missense_Mutation SNP C C T novel TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8 VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10183794 10183794 + Nonsense_Mutation SNP G G A rs119103277 alternate_allele TCGA-A3-3373-01A-02D-1421-08 TCGA-A3-3373-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I WXS Illumina Miseq Illumina HiSeq 6cbaac72-ca6e-4c4b-a016-1836959344c8 0cc2be61-ac32-46b9-864f-1092faa4f1c8