Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACIN1 22985 hgsc.bcm.edu 37 14 23549896 23549896 + Silent SNP C C T rs141522105 byfrequency TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 AKAP8 10270 broad.mit.edu;ucsc.edu 37 19 15465831 15465831 + Silent SNP T C C novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 ANAPC4 29945 hgsc.bcm.edu;ucsc.edu 37 4 25418164 25418164 + Frame_Shift_Del DEL A A - novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 ANKRD31 256006 hgsc.bcm.edu;ucsc.edu 37 5 74441847 74441847 + Missense_Mutation SNP C C G novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 ANKRD50 57182 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 125590855 125590855 + Missense_Mutation SNP T T C novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 ARHGAP5 394 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 32560363 32560363 + Missense_Mutation SNP T T G novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 ARHGAP5 394 hgsc.bcm.edu 37 14 32561296 32561296 + Missense_Mutation SNP T T C novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 ART3 419 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 77003637 77003637 + Missense_Mutation SNP C C T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 ATP8A2 51761 broad.mit.edu;ucsc.edu 37 13 26125480 26125480 + Nonsense_Mutation SNP C A A novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 BMP2K 55589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 79831928 79831928 + Missense_Mutation SNP G G T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 BMX 660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 15540571 15540571 + Missense_Mutation SNP C C A novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 C10orf18 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 5789390 5789390 + Nonsense_Mutation SNP G G T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 CCDC13 152206 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 42781196 42781196 + Missense_Mutation SNP G G T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 CCDC27 148870 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 3669160 3669160 + Missense_Mutation SNP C C A novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 CCDC73 493860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 32635626 32635626 + Missense_Mutation SNP T T G novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 CDX2 1045 broad.mit.edu 37 13 28542693 28542693 + Frame_Shift_Del DEL C - - novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 CHADL 150356 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 41632577 41632577 + Silent SNP C C T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 CLK1 1195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 201721415 201721415 + Silent SNP T T C novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 COL11A1 1301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 103468818 103468818 + Nonsense_Mutation SNP G G A novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 COMT 1312 broad.mit.edu;ucsc.edu 37 22 19956115 19956115 + Silent SNP A G G novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 DENND5B 160518 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 31540556 31540556 + Missense_Mutation SNP A A T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 DSCC1 79075 broad.mit.edu;ucsc.edu 37 8 120865431 120865431 + Missense_Mutation SNP G T T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 FAM114A2 10827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 153390869 153390869 + Missense_Mutation SNP A A T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 FAM49A 81553 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 16742257 16742257 + Splice_Site SNP C C T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 FAM86D 0 broad.mit.edu 37 3 75476735 75476735 + Silent SNP C T T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 FAM9A 171482 broad.mit.edu;hgsc.bcm.edu 37 X 8763259 8763259 + Missense_Mutation SNP C C T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 FHOD1 29109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67264547 67264547 + Missense_Mutation SNP G G T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 GRM2 2912 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 51749554 51749555 + Frame_Shift_Del DEL TT TT - novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 TT TT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 IFNGR1 3459 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 137519168 137519168 + Missense_Mutation SNP T T A novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 KCNMB4 27345 hgsc.bcm.edu 37 12 70760617 70760617 + Frame_Shift_Del DEL T T - novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 KCNMB4 27345 hgsc.bcm.edu 37 12 70760620 70760621 + Frame_Shift_Del DEL GG GG - novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 GG GG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 KIAA1045 23349 broad.mit.edu 37 9 34971509 34971509 + Missense_Mutation SNP A G G novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 LOC442421 0 broad.mit.edu 37 9 66499795 66499795 + Missense_Mutation SNP G A A rs28526589 TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 LRIG1 26018 hgsc.bcm.edu 37 3 66444578 66444579 + Frame_Shift_Ins INS - - C novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 LRP1B 53353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 141135789 141135789 + Missense_Mutation SNP C C A novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 LRP5 4041 broad.mit.edu;hgsc.bcm.edu 37 11 68216349 68216349 + Silent SNP C C T rs112415702 bycluster TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 MDGA2 161357 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 47613333 47613333 + Nonsense_Mutation SNP A A T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 MED4 29079 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 48651403 48651403 + Missense_Mutation SNP T T C novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 MGAT5 4249 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 135107382 135107382 + Missense_Mutation SNP G G A novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 MLL3 58508 hgsc.bcm.edu 37 7 151921164 151921167 + Frame_Shift_Del DEL AGGA AGGA - novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 AGGA AGGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 MST1P2 11209 broad.mit.edu 37 1 16974182 16974182 + RNA SNP C A A rs4661977 bycluster TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11184589 11184589 + Missense_Mutation SNP C C G novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C C G C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9085732 9085732 + Missense_Mutation SNP G G A novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 NEK1 4750 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 170510619 170510619 + Missense_Mutation SNP C C T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 NHEDC2 0 broad.mit.edu;ucsc.edu 37 4 103971409 103971409 + Silent SNP A G G novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 NLRP1 22861 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 5462474 5462474 + Nonsense_Mutation SNP C C T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 NOS1 4842 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 117728169 117728169 + Missense_Mutation SNP G G T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 NT5C3 51251 broad.mit.edu;hgsc.bcm.edu 37 7 33054375 33054375 + Missense_Mutation SNP T T G novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 OR1I1 126370 broad.mit.edu 37 19 15198934 15198934 + Missense_Mutation SNP A G G novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 OR4C6 219432 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55432900 55432900 + Missense_Mutation SNP G G T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 OR4D2 124538 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56247641 56247641 + Missense_Mutation SNP G G A rs149114670 TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 PIK3R2 5296 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18278085 18278085 + Missense_Mutation SNP C C A novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 PRB3 5544 broad.mit.edu 37 12 11420779 11420779 + Missense_Mutation SNP G A A novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 PRICKLE1 144165 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 42864091 42864091 + Missense_Mutation SNP C C G novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 PTEN 5728 broad.mit.edu;hgsc.bcm.edu 37 10 89725043 89725043 + Splice_Site SNP G G A novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 PYGM 5837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64527310 64527310 + Missense_Mutation SNP C C T rs145881639 byfrequency TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 RP1 6101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 55542355 55542355 + Missense_Mutation SNP C C A novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 RPGR 6103 hgsc.bcm.edu 37 X 38145180 38145180 + Silent SNP C C T rs139462910 byfrequency TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 RPL18 6141 broad.mit.edu;hgsc.bcm.edu 37 19 49121088 49121088 + Missense_Mutation SNP T T G novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 SH3TC2 79628 broad.mit.edu 37 5 148334267 148334268 + RNA DEL CT - - rs149492329 bycluster;by1000genomes TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 CT CT . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 SHMT1 6470 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18250958 18250958 + Missense_Mutation SNP T T A novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 SHROOM1 134549 broad.mit.edu;ucsc.edu 37 5 132158628 132158628 + Missense_Mutation SNP C T T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 SHROOM1 134549 broad.mit.edu;ucsc.edu 37 5 132158629 132158629 + Silent SNP C A A novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 SLC4A1 6521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42335974 42335974 + Frame_Shift_Del DEL G G - novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 SLC5A11 115584 broad.mit.edu;ucsc.edu 37 16 24918068 24918068 + Missense_Mutation SNP T C C novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 TCF4 6925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 52937099 52937099 + Silent SNP G G A novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 TMEM229A 730130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 123672679 123672679 + Missense_Mutation SNP A A T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 TNFSF14 8740 broad.mit.edu 37 19 6665221 6665221 + Missense_Mutation SNP C A A novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 Unknown 0 broad.mit.edu 37 15 28929443 28929443 + RNA SNP C T T rs692165 bycluster;by1000genomes TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 Unknown 0 broad.mit.edu 37 4 9241928 9241928 + Missense_Mutation SNP G C C novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188224 10188224 + Frame_Shift_Del DEL G G - novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 VPS13B 157680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 100711812 100711812 + Missense_Mutation SNP G G T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 XKR6 286046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 10782233 10782233 + Missense_Mutation SNP C C T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 ZNF717 100131827 hgsc.bcm.edu 37 3 75790810 75790811 + Frame_Shift_Ins INS - - T novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658 TXNIP 10628 broad.mit.edu 37 1 145440928 145440928 + Missense_Mutation SNP C G G novel TCGA-B0-4810-01A-01D-1501-10 TCGA-B0-4810-11A-02D-1501-10 C C C G C C Unknown Valid Somatic Phase_I WXS PGM . . Illumina GAIIx e014eeeb-c48e-42bb-a683-93299087a3cf 0ca418e3-1de1-40b8-bd40-cb8f47bc0658