Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADAMTS3 9508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 73175164 73175164 + Missense_Mutation SNP G G T novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 AGAP6 414189 broad.mit.edu 37 10 51769499 51769499 + Silent SNP C T T novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 ARHGAP29 9411 broad.mit.edu 37 1 94649835 94649835 + Missense_Mutation SNP G A A novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 ARHGAP32 9743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 129062035 129062035 + Missense_Mutation SNP G G A novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 C14orf2 9556 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 104381489 104381489 + Missense_Mutation SNP A A G novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 CCDC132 55610 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 92921015 92921015 + Missense_Mutation SNP C C A novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 CDKN2AIP 55602 hgsc.bcm.edu;ucsc.edu 37 4 184368249 184368249 + Frame_Shift_Del DEL T T - novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 COG5 10466 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 106924166 106924166 + Missense_Mutation SNP G G A novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 DAXX 1616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33288852 33288852 + Missense_Mutation SNP G G A novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 DCDC5 100506627 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 30930565 30930565 + Missense_Mutation SNP C C G novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 DDX23 9416 hgsc.bcm.edu 37 12 49233688 49233689 + Frame_Shift_Ins INS - - G novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 FCHSD1 89848 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 141027542 141027542 + Missense_Mutation SNP A A C novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 FCRL5 83416 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 157491077 157491077 + Missense_Mutation SNP C C A novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 GALNT5 11227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 158167827 158167827 + Missense_Mutation SNP A A T novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 GRM2 2912 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 51749885 51749885 + Missense_Mutation SNP T T A novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 HINT2 84681 hgsc.bcm.edu;ucsc.edu 37 9 35813449 35813451 + In_Frame_Del DEL TCT TCT - novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 TCT TCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 HSPA5 3309 broad.mit.edu;hgsc.bcm.edu 37 9 128001354 128001354 + Missense_Mutation SNP G G C novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 INSRR 3645 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156821582 156821582 + Splice_Site SNP T T C novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 ITPKB 3707 broad.mit.edu 37 1 226836374 226836374 + Silent SNP T C C novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 LAP3 51056 broad.mit.edu 37 4 17579162 17579162 + Missense_Mutation SNP G T T novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 LIMK2 3985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 31664140 31664140 + Missense_Mutation SNP C C T novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 MLL3 58508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 151878457 151878457 + Missense_Mutation SNP G G T novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 MPP3 4356 broad.mit.edu 37 17 41898423 41898423 + Missense_Mutation SNP A T T novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 OTOP1 133060 broad.mit.edu;hgsc.bcm.edu 37 4 4199146 4199146 + Missense_Mutation SNP A A C novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 PABPC1L 80336 broad.mit.edu 37 20 43564119 43564119 + Missense_Mutation SNP C A A novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 PLA2G4D 283748 hgsc.bcm.edu 37 15 42363043 42363043 + Missense_Mutation SNP T T G rs74678783 bycluster;byfrequency;by1000genomes TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 PTGIR 5739 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 47124908 47124908 + Missense_Mutation SNP C C G novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 RIC8B 55188 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 107237651 107237651 + Missense_Mutation SNP C C G novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 RIMBP3 85376 hgsc.bcm.edu 37 22 20458121 20458122 + Frame_Shift_Ins INS - - C novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 SCFD2 152579 hgsc.bcm.edu;ucsc.edu 37 4 53752026 53752026 + Missense_Mutation SNP C C A rs141706393 alternate_allele TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 SEC31A 22872 hgsc.bcm.edu;ucsc.edu 37 4 83800058 83800058 + Frame_Shift_Del DEL G G - novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 SLC7A3 84889 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 70147814 70147814 + Missense_Mutation SNP A A C novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 SLC9A9 285195 broad.mit.edu 37 3 143567237 143567237 + Translation_Start_Site SNP G T T novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 SMC3 9126 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 112340772 112340772 + Missense_Mutation SNP A A T novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 SRSF7 6432 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 38975784 38975784 + Missense_Mutation SNP C C A novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 STAG3L2 442582 broad.mit.edu 37 7 74300557 74300564 + Frame_Shift_Del DEL AGAGCTCC - - rs4029836 TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 AGAGCTCC AGAGCTCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 SUPT6H 6830 hgsc.bcm.edu 37 17 27027220 27027225 + In_Frame_Del DEL CGGACA CGGACA - novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 CGGACA CGGACA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 TCF3 6929 broad.mit.edu 37 19 1623968 1623968 + Silent SNP C T T novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 TMEM132D 121256 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 129559305 129559305 + Missense_Mutation SNP G G T novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 UBA2 10054 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 34959981 34959981 + Missense_Mutation SNP A A C novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191513 10191513 + Missense_Mutation SNP T T C novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 WDR46 9277 broad.mit.edu;ucsc.edu 37 6 33255942 33255942 + Missense_Mutation SNP T G G novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 ZNF716 441234 broad.mit.edu 37 7 57529077 57529077 + Missense_Mutation SNP G A A novel TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7 ZRANB1 54764 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 126671767 126671767 + Silent SNP G G A rs75293113 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-4945-01A-01D-1421-08 TCGA-B0-4945-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9fae377f-6c63-4f47-a769-a1396fb15f56 c3df2623-db3a-4d8f-a062-5d2a7ec550a7