Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AACSL 0 broad.mit.edu 37 5 178194326 178194326 + RNA SNP C T T rs34080101 bycluster;byfrequency;by1000genomes TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 AQP12A 375318 broad.mit.edu;hgsc.bcm.edu 37 2 241631447 241631447 + Silent SNP G G C novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 ARSF 416 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 2990179 2990179 + Missense_Mutation SNP A A T novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 C18orf34 0 broad.mit.edu;hgsc.bcm.edu 37 18 30795588 30795588 + Silent SNP T T A novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 C4orf41 0 broad.mit.edu;ucsc.edu 37 4 184600619 184600619 + Silent SNP T C C novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 CACNA1B 774 broad.mit.edu;hgsc.bcm.edu 37 9 141015984 141015984 + Missense_Mutation SNP G G A novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 CARD11 84433 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 2953040 2953040 + Missense_Mutation SNP C C G rs141751925 by1000genomes;alternate_allele TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 CCDC51 79714 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 48475152 48475152 + Silent SNP A A G novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 CCDC80 151887 broad.mit.edu;ucsc.edu 37 3 112357811 112357811 + Missense_Mutation SNP G C C novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 CCR6 1235 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 167550763 167550763 + Missense_Mutation SNP G G A rs113115632 alternate_allele TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 CD34 947 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 208062095 208062095 + Missense_Mutation SNP C C A novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 CLCN2 1181 hgsc.bcm.edu 37 3 184071131 184071132 + In_Frame_Ins INS - - CGG novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 COL15A1 1306 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 101824283 101824283 + Missense_Mutation SNP C C A novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 COL15A1 1306 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 101824284 101824284 + Missense_Mutation SNP T T A novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 COL6A6 131873 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 130300741 130300741 + Missense_Mutation SNP G G A novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 CSAD 51380 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53566220 53566220 + Missense_Mutation SNP C C T novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 DMD 1756 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 31187596 31187596 + Missense_Mutation SNP A A T novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 EDC4 23644 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67909957 67909957 + Silent SNP T T A novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 IDH3B 3420 broad.mit.edu 37 20 2644813 2644813 + Missense_Mutation SNP G A A novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 IL6ST 3572 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 55247810 55247810 + Missense_Mutation SNP C C A novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 IRX2 153572 broad.mit.edu 37 5 2748714 2748714 + Missense_Mutation SNP A T T novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 KIAA1462 57608 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 30316404 30316404 + Missense_Mutation SNP C C A novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 KLHL3 26249 broad.mit.edu;ucsc.edu 37 5 136974757 136974757 + Silent SNP G A A novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 LLGL1 3996 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18137246 18137246 + Missense_Mutation SNP C C T novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 LOC442421 0 broad.mit.edu 37 9 66499716 66499716 + Missense_Mutation SNP A G G rs62549179 TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 MMAB 326625 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 110006594 110006594 + Missense_Mutation SNP C C T novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 MRGPRD 116512 broad.mit.edu 37 11 68748065 68748065 + Missense_Mutation SNP T C C novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 NIPA1 123606 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 23048907 23048907 + Silent SNP C C G novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 NOX1 27035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 100117451 100117451 + Missense_Mutation SNP A A C novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 NPW 283869 broad.mit.edu 37 16 2070178 2070178 + Silent SNP C A A novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 OR8B8 26493 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 124310503 124310503 + Missense_Mutation SNP G G T novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 OR8J3 81168 broad.mit.edu 37 11 55904779 55904779 + Missense_Mutation SNP C A A novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 PELO 53918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 52096856 52096856 + Missense_Mutation SNP C C G novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 PLA2G4E 123745 hgsc.bcm.edu 37 15 42293414 42293414 + Missense_Mutation SNP C C T rs189961279 by1000genomes TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 POLN 353497 broad.mit.edu 37 4 2073957 2073957 + Missense_Mutation SNP C A A novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 POLR2A 5430 hgsc.bcm.edu 37 17 7416613 7416613 + Missense_Mutation SNP G G A novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 PYDC2 152138 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 191178998 191178998 + Missense_Mutation SNP A A G novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 RHOT2 89941 broad.mit.edu 37 16 720686 720686 + Silent SNP G A A novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 SENP6 26054 hgsc.bcm.edu 37 6 76369015 76369015 + Missense_Mutation SNP A A T novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 SETD2 29072 broad.mit.edu;hgsc.bcm.edu 37 3 47163945 47163945 + Nonsense_Mutation SNP G G T novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 SUSD5 26032 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 33194429 33194429 + Missense_Mutation SNP G G T novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 SVEP1 79987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 113265449 113265449 + Missense_Mutation SNP C C A novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 TEKT2 27285 broad.mit.edu 37 1 36553613 36553613 + Silent SNP G T T novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 TTC37 9652 broad.mit.edu;hgsc.bcm.edu 37 5 94803695 94803695 + Splice_Site SNP T T C novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179395676 179395676 + Silent SNP C C T novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 UBE2E2 7325 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 23541185 23541185 + Missense_Mutation SNP T T C novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 USH2A 7399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 216405369 216405369 + Silent SNP T T C rs138484134 by1000genomes TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 USP47 55031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 11964635 11964635 + Missense_Mutation SNP G G A novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191513 10191513 + Missense_Mutation SNP T T C novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30 ZNF668 79759 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31073518 31073518 + Missense_Mutation SNP C C T novel TCGA-B0-5081-01A-01D-1462-08 TCGA-B0-5081-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 71a9d096-0e27-4585-b54a-48214d83cd6c 5d95ccc5-6f79-404a-b3a7-b726c7f56d30