Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCA7 10347 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1048966 1048966 + Missense_Mutation SNP A A T rs145106069 alternate_allele TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 ACOX3 8310 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 8394072 8394072 + Missense_Mutation SNP C C T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 AIFM1 9131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129265667 129265667 + Missense_Mutation SNP G G T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 ALS2CL 259173 broad.mit.edu;ucsc.edu 37 3 46721931 46721931 + Missense_Mutation SNP C A A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 AMBP 259 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 116840415 116840415 + Silent SNP C C T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 ANKLE2 23141 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 133331594 133331594 + Missense_Mutation SNP C C G novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 ARMC4 55130 hgsc.bcm.edu 37 10 28250531 28250532 + Frame_Shift_Ins INS - - A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 ATXN2L 11273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 28847661 28847661 + Nonsense_Mutation SNP A A T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 B3GNT8 374907 broad.mit.edu;hgsc.bcm.edu 37 19 41931921 41931921 + Missense_Mutation SNP C C T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 BEST1 7439 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61727371 61727371 + Missense_Mutation SNP T T C novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 C10orf129 142827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 96967148 96967148 + Nonsense_Mutation SNP G G A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 C16orf75 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 11444604 11444604 + Missense_Mutation SNP T T C novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 C18orf8 29919 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 21084363 21084363 + Missense_Mutation SNP C C T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 C1orf114 57821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169391258 169391258 + Silent SNP A A G novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 C1QTNF4 114900 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 47611595 47611595 + Silent SNP G G C novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 CBL 867 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 119168096 119168096 + Missense_Mutation SNP C C T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 CDK14 5218 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 90355879 90355879 + Splice_Site SNP A A T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 CHRM2 1129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 136700642 136700642 + Missense_Mutation SNP G G A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 CPSF3 51692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 9588441 9588441 + Missense_Mutation SNP G G A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 CRYGB 1419 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 209007477 209007477 + Missense_Mutation SNP G G C novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 CTDSP2 10106 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 58217389 58217389 + Missense_Mutation SNP G G T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 DFNA5 1687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 24758693 24758693 + Silent SNP G G A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 DMGDH 29958 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 78359437 78359437 + Missense_Mutation SNP G G T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 DOPEY1 23033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 83838711 83838711 + Missense_Mutation SNP C C G novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56484745 56484745 + Nonsense_Mutation SNP C C A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 EVX2 344191 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 176948341 176948341 + Missense_Mutation SNP G G A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 FAM182B 728882 broad.mit.edu 37 20 25848606 25848606 + RNA SNP G A A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 FBXO18 84893 hgsc.bcm.edu;ucsc.edu 37 10 5953065 5953070 + In_Frame_Del DEL GGAGAA GGAGAA - novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 GGAGAA GGAGAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 GDF15 9518 broad.mit.edu;hgsc.bcm.edu 37 19 18499472 18499472 + Silent SNP G G T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 GJC2 57165 broad.mit.edu 37 1 228346349 228346349 + Missense_Mutation SNP C T T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 GNAO1 2775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 56309956 56309956 + Missense_Mutation SNP G G A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 HIVEP3 59269 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 42045713 42045713 + Missense_Mutation SNP C C T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 INSR 3643 broad.mit.edu;hgsc.bcm.edu 37 19 7152929 7152929 + Missense_Mutation SNP A A G novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 KDM5A 5927 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 442697 442697 + Missense_Mutation SNP C C T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 KDM5C 8242 broad.mit.edu;hgsc.bcm.edu 37 X 53227796 53227796 + Nonsense_Mutation SNP C C A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 KIAA1467 57613 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 13233561 13233561 + Missense_Mutation SNP C C G rs192853755 by1000genomes TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 KLHDC7B 113730 broad.mit.edu;hgsc.bcm.edu 37 22 50987493 50987493 + Missense_Mutation SNP C C A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 LAMC2 3918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 183194784 183194784 + Missense_Mutation SNP G G C novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 LIN7A 8825 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 81239638 81239638 + Silent SNP A A T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 LOC284232 0 broad.mit.edu 37 13 19415641 19415641 + RNA SNP A T T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 LOC442421 0 broad.mit.edu 37 9 66500794 66500794 + RNA SNP T C C rs7866420 bycluster;by2hit2allele TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 LOXL3 84695 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 74763177 74763177 + Missense_Mutation SNP A A C novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 MAFB 9935 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 39317054 39317054 + Missense_Mutation SNP G G A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 MCOLN3 55283 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 85491737 85491737 + Missense_Mutation SNP T T C novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 MEGF6 1953 hgsc.bcm.edu 37 1 3424401 3424402 + Frame_Shift_Ins INS - - G novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 MYL10 93408 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 101256829 101256829 + Missense_Mutation SNP G G A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 NCLN 56926 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 3192504 3192504 + Missense_Mutation SNP C C T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 NOTCH2 4853 broad.mit.edu;hgsc.bcm.edu 37 1 120464896 120464896 + Silent SNP G G A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 NR1H3 10062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 47283271 47283271 + Silent SNP G G C novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 NR1I3 9970 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 161200669 161200669 + Missense_Mutation SNP A A T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 NRIP1 8204 hgsc.bcm.edu 37 21 16338779 16338779 + Missense_Mutation SNP A A T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 ODF3 113746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 199997 199997 + Silent SNP T T C novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 ODZ4 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 78380861 78380861 + Missense_Mutation SNP C C G novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 OR52B4 143496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 4389154 4389154 + Missense_Mutation SNP G G C novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 PASK 23178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 242063382 242063382 + Silent SNP G G C novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52588877 52588877 + Frame_Shift_Del DEL G G - novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G G - G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 PKHD1L1 93035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 110502193 110502193 + Missense_Mutation SNP T T G novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 PRKCQ 5588 hgsc.bcm.edu;ucsc.edu 37 10 6553149 6553149 + Frame_Shift_Del DEL C C - novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 PRX 57716 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 40900919 40900919 + Missense_Mutation SNP C C A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 PTCHD2 57540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11594491 11594491 + Missense_Mutation SNP G G T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 RAB3GAP1 22930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 135926185 135926185 + Missense_Mutation SNP C C A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 RALGAPA1 253959 broad.mit.edu;hgsc.bcm.edu 37 14 36104763 36104763 + Missense_Mutation SNP C C G novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 RALYL 138046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 85774642 85774642 + Missense_Mutation SNP G G A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 RASA1 5921 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 86674302 86674302 + Missense_Mutation SNP C C T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 RFC1 5981 hgsc.bcm.edu;ucsc.edu 37 4 39328257 39328258 + Frame_Shift_Del DEL AA AA - novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 AA AA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 RFPL3 10738 hgsc.bcm.edu 37 22 32754354 32754355 + Frame_Shift_Ins INS - - G novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 RIMKLB 57494 broad.mit.edu;hgsc.bcm.edu 37 12 8902521 8902521 + Missense_Mutation SNP C C T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 RNASEL 6041 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 182551344 182551344 + Missense_Mutation SNP A A G novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 RUFY3 22902 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 71634345 71634345 + Missense_Mutation SNP T T G novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 SALL1 6299 hgsc.bcm.edu 37 16 51175664 51175664 + Missense_Mutation SNP T T C novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 SCNN1A 6337 broad.mit.edu;hgsc.bcm.edu 37 12 6463640 6463640 + Missense_Mutation SNP C C T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 SERTAD4 56256 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 210412917 210412917 + Silent SNP G G A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 SLC25A13 10165 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 95776002 95776002 + Missense_Mutation SNP C C T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 SLC34A3 142680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 140129157 140129157 + Missense_Mutation SNP G G A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 SPRR3 6707 hgsc.bcm.edu 37 1 152975659 152975682 + In_Frame_Del DEL GAGCCAGGCTGTACCAAGGTCCCT GAGCCAGGCTGTACCAAGGTCCCT - rs67156933 TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 GAGCCAGGCTGTACCAAGGTCCCT GAGCCAGGCTGTACCAAGGTCCCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 STAG3L2 442582 broad.mit.edu 37 7 74300557 74300564 + Frame_Shift_Del DEL AGAGCTCC - - rs4029836 TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 AGAGCTCC AGAGCTCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 SYNE2 23224 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 64568741 64568741 + Missense_Mutation SNP C C T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 SYT7 9066 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61295625 61295625 + Silent SNP G G A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 TAOK2 9344 hgsc.bcm.edu 37 16 30002435 30002436 + Frame_Shift_Ins INS - - G novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 TELO2 9894 broad.mit.edu 37 16 1557648 1557648 + Missense_Mutation SNP A C C novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 THBS2 7058 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 169634969 169634969 + Missense_Mutation SNP G G A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 TLR6 10333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 38830418 38830418 + Missense_Mutation SNP G G T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 TTN 7273 broad.mit.edu;hgsc.bcm.edu 37 2 179441300 179441300 + Missense_Mutation SNP G G A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 TUBBP5 643224 broad.mit.edu 37 9 141071110 141071110 + Silent SNP A G G rs76886508 byfrequency TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 UBR4 23352 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 19482023 19482023 + Missense_Mutation SNP T T C novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 Unknown 0 broad.mit.edu 37 16 32077407 32077407 + RNA SNP G A A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 USH2A 7399 broad.mit.edu;hgsc.bcm.edu 37 1 216595423 216595423 + Missense_Mutation SNP G G T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 VPS13B 157680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 100515083 100515083 + Missense_Mutation SNP A A T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 VPS18 57617 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 41194909 41194909 + Silent SNP G G T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 WASH3P 374666 broad.mit.edu 37 15 102516424 102516424 + Silent SNP G T T rs71252253 bycluster;byfrequency TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 XKR4 114786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 56436707 56436707 + Missense_Mutation SNP G G A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 ZBBX 79740 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 166958709 166958709 + Splice_Site SNP T T A novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 ZNFX1 57169 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47886935 47886935 + Missense_Mutation SNP T T C novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47 TECTA 7007 broad.mit.edu 37 11 121016494 121016494 + Silent SNP G T T novel TCGA-B0-5094-01A-01D-1421-08 TCGA-B0-5094-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 . . Illumina GAIIx 8b910c03-86a9-488d-80b4-1f8c214c2941 b4e4630a-b38c-4b62-b0e8-d73f0e3b4e47