Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACTN1 87 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 69356966 69356966 + Missense_Mutation SNP T T G novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 ADCY1 107 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 45725770 45725770 + Silent SNP G G A novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 AMAC1L3 0 hgsc.bcm.edu 37 17 7385682 7385682 + Missense_Mutation SNP G G A rs143401129 TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 C3orf1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 119242475 119242475 + Nonsense_Mutation SNP G G T novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 CATSPER1 117144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65792685 65792685 + Missense_Mutation SNP T T G novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 CCDC18 343099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 93649561 93649561 + Missense_Mutation SNP A A G novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 CCDC54 84692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 107097368 107097368 + Missense_Mutation SNP A A G novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 CCDC91 55297 broad.mit.edu;ucsc.edu 37 12 28636996 28636996 + Missense_Mutation SNP G T T novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 CDK12 51755 broad.mit.edu;hgsc.bcm.edu 37 17 37681129 37681129 + Missense_Mutation SNP G G A novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 CGGBP1 8545 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 88104822 88104822 + Missense_Mutation SNP C C G novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 CKS2 1164 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 91931300 91931300 + Missense_Mutation SNP T T G novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 CPXM1 56265 broad.mit.edu 37 20 2779142 2779142 + Missense_Mutation SNP T C C novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 DYNC2H1 79659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 103229065 103229065 + Missense_Mutation SNP A A G novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 FAM91A1 157769 hgsc.bcm.edu;ucsc.edu 37 8 124792237 124792237 + Frame_Shift_Del DEL C C - novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 FBXL17 64839 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 107703606 107703606 + Missense_Mutation SNP C C G novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 FECH 2235 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 55233773 55233773 + Silent SNP A A G novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 GJB6 10804 broad.mit.edu;hgsc.bcm.edu 37 13 20797320 20797320 + Missense_Mutation SNP G G T novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 HSPA8 3312 broad.mit.edu;hgsc.bcm.edu 37 11 122931975 122931975 + Missense_Mutation SNP C C G novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 ITGAM 3684 hgsc.bcm.edu;ucsc.edu 37 16 31309149 31309149 + Frame_Shift_Del DEL G G - novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 KIAA1267 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 44116407 44116407 + Missense_Mutation SNP G G C novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 KRTAP9-9 81870 hgsc.bcm.edu 37 17 39412063 39412063 + Silent SNP C C A novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 LOC442421 0 broad.mit.edu 37 9 66502883 66502884 + RNA DEL AT - - novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 AT AT . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 LOC442421 0 broad.mit.edu 37 9 66502886 66502886 + RNA DEL T - - novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 LOC650368 650368 broad.mit.edu 37 11 3427845 3427845 + RNA SNP C T T novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 LRRC40 55631 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 70618119 70618119 + Missense_Mutation SNP A A C novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 MAP2K3 5606 hgsc.bcm.edu 37 17 21215483 21215483 + Silent SNP C C T rs55935757 bycluster;byfrequency;by1000genomes TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 MEN1 4221 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64573234 64573234 + Frame_Shift_Del DEL T T - novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 MST1P2 11209 broad.mit.edu 37 1 16976641 16976641 + RNA SNP C T T rs71230903 alternate_allele TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 MUC20 200958 broad.mit.edu 37 3 195452619 195452619 + Missense_Mutation SNP C T T rs28549850 bycluster;byfrequency TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 MUC20 200958 broad.mit.edu 37 3 195452645 195452645 + Missense_Mutation SNP G A A novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 NHLRC2 374354 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 115614767 115614767 + Missense_Mutation SNP G G A novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 PALM2-AKAP2 445815 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 112918733 112918733 + Nonsense_Mutation SNP G G T novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52649440 52649440 + Frame_Shift_Del DEL T T - novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 PCDH15 65217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 55587279 55587279 + Missense_Mutation SNP C C T novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 PCDH19 57526 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 99551562 99551562 + Frame_Shift_Del DEL C C - novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 PNMA5 114824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 152159503 152159503 + Missense_Mutation SNP C C T novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 PRRC2C 23215 hgsc.bcm.edu 37 1 171511149 171511149 + Frame_Shift_Del DEL A A - novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 PSMD11 5717 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 30806900 30806900 + Missense_Mutation SNP C C T novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 RFPL4A 342931 broad.mit.edu 37 19 56274095 56274095 + Missense_Mutation SNP G A A novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 TCEB3C 162699 broad.mit.edu 37 18 44554961 44554961 + Missense_Mutation SNP C T T novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 TOR3A 64222 broad.mit.edu;hgsc.bcm.edu 37 1 179057120 179057120 + Missense_Mutation SNP G G C novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 TRDMT1 1787 broad.mit.edu 37 10 17195591 17195591 + Silent SNP T C C novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179398617 179398617 + Missense_Mutation SNP T T C novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 UBQLN1 29979 broad.mit.edu;ucsc.edu 37 9 86276810 86276810 + Silent SNP G C C novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188294 10188295 + Frame_Shift_Ins INS - - T novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 VPS18 57617 broad.mit.edu 37 15 41191988 41191988 + Silent SNP A C C novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 WBSCR27 155368 hgsc.bcm.edu 37 7 73249165 73249165 + Missense_Mutation SNP T T A rs13246460 bycluster;byfrequency;by1000genomes TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 YTHDC2 64848 broad.mit.edu;hgsc.bcm.edu 37 5 112899759 112899759 + Silent SNP T T C novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232 ZC3H18 124245 broad.mit.edu;hgsc.bcm.edu 37 16 88688681 88688681 + Missense_Mutation SNP C C A novel TCGA-B0-5693-01A-11D-1534-10 TCGA-B0-5693-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq be92ee16-6288-46c0-aaa7-7a27020cd7ca 51df4667-989b-4611-b869-3d8046d76232