Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADAM6 8755 broad.mit.edu 37 14 106714625 106714625 + RNA SNP G T T novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 ALPK2 115701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 56246350 56246350 + Missense_Mutation SNP A A G novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 BAT2L2 0 broad.mit.edu 37 1 171526993 171526993 + Silent SNP A C C novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 BCORL1 63035 broad.mit.edu 37 X 129150165 129150165 + Silent SNP G A A novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 C8orf31 286122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 144124475 144124475 + Silent SNP C C G novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 CABIN1 23523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24437602 24437602 + Missense_Mutation SNP G G A novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 CDK15 65061 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 202687539 202687539 + Silent SNP C C T novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 CENPF 1063 broad.mit.edu;ucsc.edu 37 1 214830403 214830403 + Silent SNP T C C novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 CLDN18 51208 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 137717737 137717737 + Missense_Mutation SNP G G T novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 CLPX 10845 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 65449219 65449219 + Missense_Mutation SNP T T C novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 COL19A1 1310 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 70916883 70916883 + Missense_Mutation SNP G G T rs141812196 byfrequency;alternate_allele TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 CT62 196993 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 71403498 71403498 + Silent SNP T T G novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 DDX18 8886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 118583851 118583851 + Missense_Mutation SNP A A G novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 DENND4A 10260 broad.mit.edu;ucsc.edu 37 15 65957694 65957694 + Nonsense_Mutation SNP C T T novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 DHX29 54505 broad.mit.edu;ucsc.edu 37 5 54579287 54579287 + Missense_Mutation SNP T C C novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 DIAPH3 81624 hgsc.bcm.edu 37 13 60385029 60385030 + Frame_Shift_Ins INS - - T novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 DSP 1832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7583844 7583844 + Missense_Mutation SNP G G T novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56394387 56394387 + Missense_Mutation SNP C C A novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C C A C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56394388 56394388 + Missense_Mutation SNP T T A novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T T A T T Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 FIBCD1 84929 broad.mit.edu 37 9 133799697 133799697 + Silent SNP C T T novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 GNA13 10672 hgsc.bcm.edu;ucsc.edu 37 17 63052574 63052574 + Missense_Mutation SNP C C G novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 HDAC1 3065 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 32782361 32782361 + Missense_Mutation SNP G G C novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 HOXC6 3223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 54422514 54422514 + Missense_Mutation SNP A A G novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 INADL 10207 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 62228715 62228715 + Missense_Mutation SNP G G A novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 KCP 375616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 128519646 128519646 + Missense_Mutation SNP A A T novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 KIAA0355 9710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 34832722 34832722 + Missense_Mutation SNP A A G novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 KL 9365 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 33635592 33635592 + Silent SNP T T C novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 LRBA 987 broad.mit.edu 37 4 151604748 151604748 + Missense_Mutation SNP T C C novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 MET 4233 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 116422132 116422132 + Missense_Mutation SNP T T G novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 NEFM 4741 broad.mit.edu 37 8 24775663 24775663 + Silent SNP G A A novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 NOL12 79159 broad.mit.edu;ucsc.edu 37 22 38084989 38084989 + Missense_Mutation SNP C G G novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 PAM 5066 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 102326008 102326008 + Missense_Mutation SNP G G A novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 PDE7B 27115 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 136500189 136500189 + Silent SNP G G A novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 PIGZ 80235 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 196674754 196674755 + Frame_Shift_Del INS - - T novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 PIGZ 80235 hgsc.bcm.edu 37 3 196674755 196674755 + Nonsense_Mutation SNP C C T novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 PTPRH 5794 broad.mit.edu;hgsc.bcm.edu 37 19 55713578 55713578 + Silent SNP C C T novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 RELT 84957 broad.mit.edu;ucsc.edu 37 11 73105299 73105299 + Missense_Mutation SNP A G G novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 RYR2 6262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 237796991 237796991 + Silent SNP A A G novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 SERPINB4 6318 hgsc.bcm.edu;ucsc.edu 37 18 61305037 61305038 + Frame_Shift_Ins INS - - AA novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 SLC37A4 2542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118899051 118899051 + Missense_Mutation SNP C C G novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 SPATA5L1 79029 broad.mit.edu 37 15 45695555 45695555 + Frame_Shift_Del DEL C - - novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 ST14 6768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 130058115 130058115 + Missense_Mutation SNP T T C novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 TNRC18 84629 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 5396761 5396761 + Silent SNP C C A novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 TUBB2C 0 broad.mit.edu 37 9 140137360 140137360 + Silent SNP T C C novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 Unknown 0 broad.mit.edu 37 9 66466172 66466172 + RNA SNP T C C novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 Unknown 0 broad.mit.edu 37 9 68414462 68414462 + RNA SNP A G G rs149255248 TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 WDR36 134430 broad.mit.edu 37 5 110428209 110428209 + Missense_Mutation SNP G T T novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 WDR87 83889 broad.mit.edu 37 19 38385920 38385920 + Missense_Mutation SNP T G G novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 ZBBX 79740 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 167000259 167000259 + Missense_Mutation SNP G G C novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 ZBTB33 10009 hgsc.bcm.edu 37 X 119387854 119387854 + Missense_Mutation SNP T T A novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 ZNF700 90592 broad.mit.edu;hgsc.bcm.edu 37 19 12060408 12060408 + Silent SNP T T C novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24 ZNF7 7553 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 146067912 146067912 + Missense_Mutation SNP T T C novel TCGA-B0-5707-01A-11D-1534-10 TCGA-B0-5707-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq eb2f9f38-bce2-4746-a3c8-40abc3379b32 d88a725d-9967-4fc7-94a6-44cccccdde24