Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACSBG2 81616 broad.mit.edu 37 19 6177251 6177251 + Missense_Mutation SNP T G G novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 ACVR1C 130399 hgsc.bcm.edu 37 2 158443712 158443712 + Silent SNP C C A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 AHCYL2 23382 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 129064971 129064971 + Missense_Mutation SNP C C A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 AMPD1 270 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 115221022 115221022 + Nonsense_Mutation SNP T T A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 ANAPC11 51529 broad.mit.edu;hgsc.bcm.edu 37 17 79857246 79857246 + Missense_Mutation SNP G G A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 ANKRD44 91526 broad.mit.edu;ucsc.edu 37 2 197946412 197946412 + Missense_Mutation SNP C T T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 APITD1 378708 hgsc.bcm.edu 37 1 10494765 10494765 + RNA SNP T T C novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 ARHGEF26 26084 hgsc.bcm.edu 37 3 153870723 153870723 + Splice_Site SNP T T A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 ATP8A2 51761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 26413708 26413708 + Missense_Mutation SNP G G A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 ATRNL1 26033 hgsc.bcm.edu 37 10 116930981 116930981 + Missense_Mutation SNP G G T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52437163 52437163 + Nonsense_Mutation SNP G G C novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 BAZ2B 29994 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 160240140 160240140 + Missense_Mutation SNP C C A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 BRAF 673 hgsc.bcm.edu 37 7 140550005 140550005 + Missense_Mutation SNP T T A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 C12orf11 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 27066946 27066946 + Missense_Mutation SNP G G C novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 C17orf82 388407 broad.mit.edu 37 17 59489871 59489877 + Frame_Shift_Del DEL GGCCTCG - - novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 GGCCTCG GGCCTCG . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 C2orf85 0 broad.mit.edu 37 2 242815348 242815348 + Missense_Mutation SNP G C C novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 CARD6 84674 hgsc.bcm.edu;ucsc.edu 37 5 40854473 40854475 + In_Frame_Del DEL GTC GTC - novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 GTC GTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 CENPB 1059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 3765589 3765589 + Silent SNP A A G novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 CHRM5 1133 broad.mit.edu 37 15 34355731 34355731 + Nonsense_Mutation SNP G A A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 CLIC2 1193 broad.mit.edu;ucsc.edu 37 X 154563725 154563725 + Silent SNP C A A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 CLPX 10845 hgsc.bcm.edu 37 15 65471324 65471324 + Silent SNP C C T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 COL22A1 169044 broad.mit.edu;ucsc.edu 37 8 139825225 139825225 + Missense_Mutation SNP C A A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 COL6A3 1293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 238280964 238280964 + Silent SNP C C T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 CRISP2 7180 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 49667553 49667553 + Missense_Mutation SNP T T C novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 CUBN 8029 broad.mit.edu;ucsc.edu 37 10 16975260 16975260 + Missense_Mutation SNP T A A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T T A T T Unknown Valid Somatic Phase_I WXS 454 Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 DCAF8L2 347442 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 27766775 27766775 + Missense_Mutation SNP C C T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 DDX26B 203522 hgsc.bcm.edu 37 X 134715017 134715017 + Missense_Mutation SNP C C T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 DICER1 23405 hgsc.bcm.edu 37 14 95577719 95577719 + Nonsense_Mutation SNP C C A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 DPY19L1 23333 broad.mit.edu;hgsc.bcm.edu 37 7 35029520 35029520 + Silent SNP C C T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 DSCR6 53820 broad.mit.edu 37 21 38390280 38390280 + Missense_Mutation SNP T C C novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 DYDC1 143241 hgsc.bcm.edu 37 10 82112339 82112339 + Nonsense_Mutation SNP G G A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 DYSF 8291 broad.mit.edu 37 2 71825715 71825715 + Missense_Mutation SNP T C C novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 EIF4E2 9470 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 233431788 233431788 + Missense_Mutation SNP G G A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 ESPL1 9700 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53686061 53686061 + Splice_Site SNP G G T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 FAM157B 100132403 broad.mit.edu 37 9 141107536 141107537 + In_Frame_Ins INS - GCA GCA rs3061423 TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 FAM54A 0 hgsc.bcm.edu;ucsc.edu 37 6 136560875 136560875 + Nonsense_Mutation SNP G G A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 FGL2 10875 broad.mit.edu;ucsc.edu 37 7 76826154 76826154 + Silent SNP C T T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 GALC 2581 hgsc.bcm.edu 37 14 88406277 88406277 + Missense_Mutation SNP T T G novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 GCA 25801 hgsc.bcm.edu;ucsc.edu 37 2 163204196 163204196 + Missense_Mutation SNP A A G novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 GNAT2 2780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110151406 110151406 + Missense_Mutation SNP T T C novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 GPR111 222611 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 47649747 47649747 + Frame_Shift_Del DEL C C - novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 GRB7 2886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37899552 37899552 + Missense_Mutation SNP C C T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 HIST1H2BJ 8970 broad.mit.edu;hgsc.bcm.edu 37 6 27100432 27100432 + Missense_Mutation SNP C C T rs137867381 alternate_allele TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 HIST2H2AB 317772 broad.mit.edu 37 1 149859428 149859428 + Silent SNP A G G novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 HIST2H2AB 317772 hgsc.bcm.edu 37 1 149859101 149859101 + Silent SNP C C T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 HIST2H2AC 8338 broad.mit.edu;hgsc.bcm.edu 37 1 149858593 149858593 + Silent SNP C C T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 HIST2H2AC 8338 hgsc.bcm.edu 37 1 149858563 149858563 + Silent SNP C C T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 HNRNPD 3184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 83280713 83280713 + Missense_Mutation SNP C C T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 HUWE1 10075 broad.mit.edu 37 X 53586385 53586385 + Silent SNP G T T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 HYDIN 54768 broad.mit.edu;ucsc.edu 37 16 70986456 70986456 + Missense_Mutation SNP C A A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 ITPR2 3709 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 26553126 26553126 + Missense_Mutation SNP C C T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 KIAA1210 57481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 118217056 118217056 + Missense_Mutation SNP G G C novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 KIF15 56992 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 44847461 44847461 + Missense_Mutation SNP C C T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 KIF21A 55605 hgsc.bcm.edu 37 12 39726836 39726836 + Nonsense_Mutation SNP G G C novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 KRTAP13-1 140258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 31768458 31768458 + Silent SNP C C T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 LILRA3 11026 broad.mit.edu;hgsc.bcm.edu 37 19 54803946 54803946 + Missense_Mutation SNP C C T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 LIPN 643418 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 90534901 90534901 + Missense_Mutation SNP A A C novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 LOC284100 284100 broad.mit.edu 37 17 36214775 36214775 + RNA SNP G T T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 LOC401010 401010 broad.mit.edu 37 2 132201085 132201085 + Missense_Mutation SNP C A A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 LRRC16A 55604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 25285102 25285102 + Nonsense_Mutation SNP G G T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 MED13L 23389 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 116409971 116409971 + Missense_Mutation SNP C C T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 MIPOL1 145282 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 37777677 37777677 + Missense_Mutation SNP G G A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 MKL2 57496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 14328057 14328057 + Missense_Mutation SNP G G A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 MLL2 8085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49444338 49444338 + Silent SNP C C T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 MMP7 4316 hgsc.bcm.edu 37 11 102394122 102394122 + Silent SNP G G A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 MS4A14 84689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60164088 60164088 + Missense_Mutation SNP G G A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 MUC12 10071 hgsc.bcm.edu;ucsc.edu 37 7 100634674 100634674 + Missense_Mutation SNP C C A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 MYO1G 64005 broad.mit.edu;ucsc.edu 37 7 45005737 45005737 + Missense_Mutation SNP T A A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 NBEA 26960 broad.mit.edu;hgsc.bcm.edu 37 13 36046544 36046544 + Silent SNP G G T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 NDUFAF1 51103 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 41689026 41689026 + Missense_Mutation SNP G G C novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 NRD1 4898 hgsc.bcm.edu 37 1 52306082 52306082 + Missense_Mutation SNP A A T rs62639317 TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 OR4P4 81300 broad.mit.edu;ucsc.edu 37 11 55406555 55406555 + Missense_Mutation SNP A G G novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 PKD2L1 9033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 102056953 102056953 + Missense_Mutation SNP C C A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 PKHD1 5314 hgsc.bcm.edu;ucsc.edu 37 6 51747999 51747999 + Silent SNP C C A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 PLAC4 191585 hgsc.bcm.edu 37 21 42551103 42551104 + Frame_Shift_Del INS - - C novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 PLCB3 5331 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64029901 64029901 + Silent SNP G G A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 PRAMEF1 65121 broad.mit.edu 37 1 12853441 12853441 + Missense_Mutation SNP C A A rs75270454 bycluster;byfrequency TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 PXDN 7837 broad.mit.edu;ucsc.edu 37 2 1652062 1652062 + Missense_Mutation SNP C T T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 RBM20 282996 broad.mit.edu;hgsc.bcm.edu 37 10 112540834 112540834 + Missense_Mutation SNP C C T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 RBM39 9584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 34312531 34312531 + Silent SNP T T C novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 RCBTB2 1102 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 49084795 49084795 + Missense_Mutation SNP T T A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 RDX 5962 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 110150412 110150412 + Silent SNP C C A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 RECQL5 9400 broad.mit.edu;ucsc.edu 37 17 73654527 73654527 + Missense_Mutation SNP A C C novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 SLC4A10 57282 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 162696378 162696378 + Silent SNP A A G novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 SMO 6608 broad.mit.edu;hgsc.bcm.edu 37 7 128845209 128845209 + Missense_Mutation SNP G G A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 SOX9 6662 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 70120330 70120330 + Missense_Mutation SNP C C A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 SPTBN5 51332 hgsc.bcm.edu 37 15 42178134 42178135 + Frame_Shift_Del DEL CT CT - novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 CT CT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 SYVN1 84447 broad.mit.edu 37 11 64897312 64897312 + Missense_Mutation SNP T C C novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 TELO2 9894 broad.mit.edu 37 16 1550655 1550655 + Silent SNP C T T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 TMEM165 55858 hgsc.bcm.edu;ucsc.edu 37 4 56284067 56284067 + Frame_Shift_Del DEL T T - novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 TMOD1 7111 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 100326390 100326390 + Silent SNP G G A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 TRUB2 26995 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131077879 131077879 + Silent SNP G G A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 TSPYL6 388951 hgsc.bcm.edu 37 2 54482704 54482709 + In_Frame_Del DEL GGGCCC GGGCCC - rs141694932 bycluster;by1000genomes TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 GGGCCC GGGCCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179404327 179404327 + Missense_Mutation SNP T T G rs191054704 by1000genomes TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T T G T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 UGT2A1 10941 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 70460937 70460937 + Missense_Mutation SNP C C T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 Unknown 0 broad.mit.edu 37 17 16722824 16722824 + RNA SNP G A A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 Unknown 0 broad.mit.edu 37 5 179078891 179078891 + Missense_Mutation SNP T C C novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 ZBTB16 7704 broad.mit.edu;ucsc.edu 37 11 113934420 113934420 + Missense_Mutation SNP C T T novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 ZBTB33 10009 hgsc.bcm.edu 37 X 119387833 119387834 + In_Frame_Ins INS - - TGA novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507 ZNF684 127396 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 41007325 41007325 + Missense_Mutation SNP G G A novel TCGA-B8-4143-01A-01D-1806-10 TCGA-B8-4143-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb186c78-1052-48ec-97f4-c94bddf0df72 51a86b5e-507a-41c0-b689-4d1fc3f6c507