Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADORA2A 135 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24829496 24829496 + Frame_Shift_Del DEL A A - novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b ADRBK2 157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 26114290 26114290 + Missense_Mutation SNP G G T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b AMELX 265 broad.mit.edu 37 X 11316960 11316960 + Missense_Mutation SNP T C C novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b ANK3 288 hgsc.bcm.edu;ucsc.edu 37 10 61831858 61831858 + Frame_Shift_Del DEL T T - novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b ANKRD36 375248 hgsc.bcm.edu 37 2 97883055 97883055 + Frame_Shift_Del DEL G G - novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b ANKRD50 57182 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 125631530 125631530 + Missense_Mutation SNP C C G novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b ARSE 415 broad.mit.edu 37 X 2856294 2856294 + Frame_Shift_Del DEL C - - novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b ATF4 468 hgsc.bcm.edu 37 22 39917950 39917951 + Frame_Shift_Ins INS - - C novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b ATRNL1 26033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 116880014 116880014 + Missense_Mutation SNP C C A novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b BAZ2B 29994 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 160194250 160194250 + Nonsense_Mutation SNP C C A novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b BIN2 51411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 51690950 51690950 + Splice_Site SNP T T A novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b C19orf55 148137 hgsc.bcm.edu 37 19 36258938 36258938 + Frame_Shift_Del DEL G G - rs139446374 bycluster;by1000genomes TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b C20orf26 26074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 20243669 20243669 + Missense_Mutation SNP C C T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b C8orf47 203111 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 99101674 99101674 + Frame_Shift_Del DEL A A - novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b CDK13 8621 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 40134281 40134281 + Frame_Shift_Del DEL C C - novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b CDX2 1045 broad.mit.edu 37 13 28542702 28542703 + Frame_Shift_Ins INS - G G novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b CEP97 79598 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 101476746 101476746 + Silent SNP T T C novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b COL2A1 1280 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 48369167 48369167 + Missense_Mutation SNP C C A novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b DPCR1 135656 broad.mit.edu;hgsc.bcm.edu 37 6 30917885 30917885 + Silent SNP C C G novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b ELF1 1997 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 41515228 41515228 + Missense_Mutation SNP G G A novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b EPAS1 2034 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 46605874 46605874 + Missense_Mutation SNP G G A novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b FAM166A 401565 broad.mit.edu 37 9 140140165 140140165 + Missense_Mutation SNP T C C novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b FBN3 84467 broad.mit.edu;ucsc.edu 37 19 8201371 8201371 + Missense_Mutation SNP T G G novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b FNBP1L 54874 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 93987691 93987691 + Missense_Mutation SNP C C T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b GPR179 440435 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36499492 36499492 + Missense_Mutation SNP C C T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b HGC6.3 100128124 broad.mit.edu 37 6 168377071 168377071 + Missense_Mutation SNP G A A novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b KIF13A 63971 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 17783914 17783914 + Missense_Mutation SNP C C T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b KRTAP10-2 386679 hgsc.bcm.edu 37 21 45970772 45970772 + Silent SNP A A G rs76021731 TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b LOC646214 646214 broad.mit.edu 37 15 21936308 21936308 + RNA SNP G T T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b LOXHD1 125336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 44069072 44069072 + Missense_Mutation SNP T T G novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b LRP2 4036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 169995117 169995117 + Silent SNP A A C novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A A C A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b LRRCC1 85444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 86044062 86044062 + Missense_Mutation SNP G G T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b LYPD3 27076 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 43969649 43969649 + Silent SNP G G A novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b MAD1L1 8379 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 2255571 2255571 + Silent SNP C C T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b MAPK9 5601 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179668101 179668101 + Missense_Mutation SNP C C T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b MED13L 23389 broad.mit.edu;ucsc.edu 37 12 116549250 116549250 + Silent SNP G T T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b MED14 9282 broad.mit.edu;hgsc.bcm.edu 37 X 40573155 40573155 + Missense_Mutation SNP T T C novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b MEIS1 4211 hgsc.bcm.edu 37 2 66739382 66739383 + Frame_Shift_Ins INS - - T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 8998753 8998753 + Silent SNP G G T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b MUC4 4585 broad.mit.edu 37 3 195509180 195509180 + Missense_Mutation SNP C G G novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b MUC4 4585 hgsc.bcm.edu 37 3 195507915 195507915 + Silent SNP T T C rs71635073 bycluster TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b MUC7 4589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 71346891 71346891 + Missense_Mutation SNP A A T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b MUM1 84939 hgsc.bcm.edu;ucsc.edu 37 19 1369580 1369580 + RNA SNP C C T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b MYBBP1A 10514 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 4442824 4442824 + Silent SNP T T A novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b NBPF9 400818 hgsc.bcm.edu 37 1 144615250 144615251 + Frame_Shift_Ins INS - - AA novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b NUP153 9972 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 17624932 17624932 + Missense_Mutation SNP G G A novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b OR2G2 81470 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 247752125 247752125 + Missense_Mutation SNP G G A novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b PALLD 23022 broad.mit.edu 37 4 169433483 169433483 + Missense_Mutation SNP G C C novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52702514 52702514 + Silent SNP C C T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b PCDH15 65217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 55568846 55568846 + Missense_Mutation SNP G G A novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b PCDHGB7 56099 broad.mit.edu 37 5 140797646 140797646 + Missense_Mutation SNP C T T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b PCDHGC5 56097 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140869478 140869478 + Missense_Mutation SNP G G T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b PCLO 27445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82582155 82582155 + Missense_Mutation SNP A A G novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b PDE4DIP 9659 broad.mit.edu;hgsc.bcm.edu 37 1 144931265 144931265 + Silent SNP G G A novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b PDGFRB 5159 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149505045 149505045 + Silent SNP G G A novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G G A G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b PDGFRB 5159 broad.mit.edu;ucsc.edu 37 5 149505046 149505046 + Missense_Mutation SNP T G G novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b PI4KAP1 728233 broad.mit.edu 37 22 20385733 20385733 + RNA SNP A G G rs402724 bycluster;byfrequency;by2hit2allele TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b PIK3C2G 5288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 18762521 18762521 + Silent SNP G G A novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b POLR2A 5430 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7415174 7415174 + Silent SNP G G T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b PPP1R15A 23645 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49379159 49379159 + Missense_Mutation SNP G G A novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b PRPH 5630 broad.mit.edu;ucsc.edu 37 12 49690246 49690246 + Missense_Mutation SNP A G G novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b RASAL3 64926 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 15565475 15565475 + Missense_Mutation SNP G G A novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b RIMS1 22999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 73001656 73001656 + Missense_Mutation SNP C C G novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b SDAD1 55153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 76897076 76897076 + Splice_Site SNP C C T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b SEPN1 57190 broad.mit.edu;hgsc.bcm.edu 37 1 26138019 26138019 + Missense_Mutation SNP T T C novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47079180 47079181 + Frame_Shift_Ins INS - - G novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 - - - G - - Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b SLAMF1 6504 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160607007 160607007 + Missense_Mutation SNP C C T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b SLC2A3 6515 broad.mit.edu;hgsc.bcm.edu 37 12 8083142 8083142 + Missense_Mutation SNP G G T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b SLCO1B3 28234 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 21032479 21032479 + Silent SNP G G T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b SMARCA2 6595 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 2039524 2039524 + Missense_Mutation SNP G G A novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b TCHH 7062 hgsc.bcm.edu 37 1 152084216 152084216 + Missense_Mutation SNP C C G novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b TDRD1 56165 broad.mit.edu;ucsc.edu 37 10 115962900 115962900 + Nonsense_Mutation SNP A T T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b TESC 54997 hgsc.bcm.edu;ucsc.edu 37 12 117513065 117513065 + RNA SNP G G T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b TFR2 7036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100238672 100238672 + Silent SNP G G A novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179457765 179457765 + Missense_Mutation SNP C C A novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b UBR2 23304 hgsc.bcm.edu;ucsc.edu 37 6 42626515 42626515 + Missense_Mutation SNP G G T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b UNC13B 10497 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35310690 35310690 + Nonsense_Mutation SNP G G T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b USH2A 7399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 216052254 216052254 + Missense_Mutation SNP C C T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b VARS 7407 broad.mit.edu 37 6 31752484 31752485 + Frame_Shift_Del DEL GA - - novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 GA GA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b VHL 7428 hgsc.bcm.edu 37 3 10183817 10183817 + Nonsense_Mutation SNP C C T novel TCGA-BP-4161-01A-02W-1382-10 TCGA-BP-4161-11A-01W-1244-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina MiSeq 13124411-f98d-4603-8022-2e0fd44ae880 63cd168a-94e8-4ee0-96ca-db4199aa6b73 WIZ 58525 broad.mit.edu 37 19 15559003 15559003 + Missense_Mutation SNP C T T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b ZNF221 7638 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44469419 44469419 + Silent SNP C C T novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b ZNF285 26974 hgsc.bcm.edu;ucsc.edu 37 19 44892225 44892225 + Missense_Mutation SNP T T G rs114985922 byfrequency TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b ZNF687 57592 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151259628 151259628 + Missense_Mutation SNP A A T rs149043825 TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b PTEN 5728 broad.mit.edu 37 10 89725042 89725042 + Splice_Site SNP A G G novel TCGA-BP-4161-01A-02D-1386-10 TCGA-BP-4161-11A-01D-1251-10 A A A G A A Unknown Valid Somatic Phase_I WXS PGM . . Illumina GAIIx 1f164308-3c94-4aca-9592-64eedcabf95f 7ab9f3c3-88b7-4d39-be66-f4ea0798274b