Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AFF3 3899 hgsc.bcm.edu 37 2 100623382 100623382 + Silent SNP G G A novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d AHCYL1 10768 hgsc.bcm.edu;ucsc.edu 37 1 110553923 110553923 + Missense_Mutation SNP T T A novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d ALDH4A1 8659 hgsc.bcm.edu;ucsc.edu 37 1 19202926 19202926 + Silent SNP T T C rs2230706 bycluster;byfrequency;by1000genomes TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d AMY1B 277 hgsc.bcm.edu 37 1 104236035 104236035 + Missense_Mutation SNP T T G novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d AP3D1 8943 hgsc.bcm.edu;ucsc.edu 37 19 2121803 2121803 + Missense_Mutation SNP A A G novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d B4GALNT2 124872 hgsc.bcm.edu 37 17 47246988 47246988 + Silent SNP C C A novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d CENPF 1063 hgsc.bcm.edu 37 1 214815523 214815523 + Missense_Mutation SNP C C T novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d CNDP1 84735 hgsc.bcm.edu;ucsc.edu 37 18 72234508 72234508 + Missense_Mutation SNP A A G novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d CPLX2 10814 hgsc.bcm.edu 37 5 175306957 175306957 + Missense_Mutation SNP G G A novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d CR1 1378 hgsc.bcm.edu;ucsc.edu 37 1 207791580 207791580 + Missense_Mutation SNP C C G novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d DTNA 1837 hgsc.bcm.edu 37 18 32431802 32431802 + Missense_Mutation SNP C C T novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d ECHS1 1892 hgsc.bcm.edu;ucsc.edu 37 10 135179506 135179506 + Missense_Mutation SNP G G T novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d FAM129A 116496 hgsc.bcm.edu 37 1 184764659 184764659 + Missense_Mutation SNP C C T novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d GALNS 2588 hgsc.bcm.edu;ucsc.edu 37 16 88908325 88908325 + Missense_Mutation SNP G G T novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d GLE1 2733 hgsc.bcm.edu 37 9 131267089 131267089 + Missense_Mutation SNP C C G rs150246404 byfrequency TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d GLG1 2734 hgsc.bcm.edu;ucsc.edu 37 16 74506246 74506246 + Splice_Site SNP C C T novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d GRB2 2885 hgsc.bcm.edu 37 17 73316550 73316550 + Missense_Mutation SNP C C T novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d HAUS1 115106 hgsc.bcm.edu;ucsc.edu 37 18 43708041 43708041 + Missense_Mutation SNP G G A novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d HELQ 113510 hgsc.bcm.edu 37 4 84350864 84350864 + Missense_Mutation SNP C C T novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d HPGDS 27306 hgsc.bcm.edu;ucsc.edu 37 4 95229888 95229888 + Missense_Mutation SNP G G A novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d ICAM1 3383 hgsc.bcm.edu 37 19 10394734 10394734 + Silent SNP T T C novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d LRRC55 219527 hgsc.bcm.edu 37 11 56950122 56950122 + Missense_Mutation SNP A A C novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d MAP4K5 11183 hgsc.bcm.edu;ucsc.edu 37 14 50952347 50952348 + Frame_Shift_Del DEL AT AT - novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 AT AT . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d MAPK9 5601 hgsc.bcm.edu 37 5 179676014 179676014 + Missense_Mutation SNP C C T novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d MMAA 166785 hgsc.bcm.edu;ucsc.edu 37 4 146560425 146560425 + Missense_Mutation SNP A A C novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d NFKBIB 4793 hgsc.bcm.edu 37 19 39390845 39390845 + Missense_Mutation SNP G G T novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d NOTCH1 4851 hgsc.bcm.edu 37 9 139399349 139399349 + Silent SNP G G A novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d NPR1 4881 hgsc.bcm.edu 37 1 153660245 153660246 + Frame_Shift_Del DEL GT GT - novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 GT GT . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d OAS3 4940 hgsc.bcm.edu;ucsc.edu 37 12 113405908 113405908 + Nonsense_Mutation SNP C C G novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d OGT 8473 hgsc.bcm.edu;ucsc.edu 37 X 70776831 70776831 + Missense_Mutation SNP C C T novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52712580 52712580 + Nonsense_Mutation SNP G G A novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d PDZRN4 29951 hgsc.bcm.edu 37 12 41966392 41966392 + Missense_Mutation SNP A A T novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 A A A T A A Unknown Valid Somatic Phase_I WXS 454 SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d PKD1L2 114780 hgsc.bcm.edu;ucsc.edu 37 16 81232574 81232574 + Silent SNP T T C novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d PUM1 9698 hgsc.bcm.edu;ucsc.edu 37 1 31479895 31479895 + Missense_Mutation SNP G G T novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d R3HDM1 23518 hgsc.bcm.edu 37 2 136409444 136409444 + Missense_Mutation SNP C C T rs112729561 alternate_allele TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d RASGRF1 5923 hgsc.bcm.edu;ucsc.edu 37 15 79317727 79317727 + Missense_Mutation SNP G G C novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d RGPD5 84220 hgsc.bcm.edu 37 2 110602778 110602778 + Missense_Mutation SNP G G A novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d RIOK1 83732 hgsc.bcm.edu;ucsc.edu 37 6 7405162 7405162 + Missense_Mutation SNP G G T novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d RORB 6096 hgsc.bcm.edu;ucsc.edu 37 9 77282715 77282715 + Missense_Mutation SNP G G A novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d RPL22L1 200916 hgsc.bcm.edu;ucsc.edu 37 3 170584200 170584200 + Missense_Mutation SNP T T A novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d SEC14L4 284904 hgsc.bcm.edu;ucsc.edu 37 22 30888522 30888522 + Silent SNP G G T novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d SETD2 29072 hgsc.bcm.edu 37 3 47155365 47155365 + Splice_Site SNP C C T novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I WXS PGM SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d SFXN4 119559 hgsc.bcm.edu;ucsc.edu 37 10 120900791 120900791 + Missense_Mutation SNP G G C novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d SGK269 0 hgsc.bcm.edu;ucsc.edu 37 15 77407312 77407312 + Missense_Mutation SNP C C T novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d SLC41A3 54946 hgsc.bcm.edu;ucsc.edu 37 3 125725333 125725333 + Missense_Mutation SNP G G T novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d SLC46A1 113235 hgsc.bcm.edu;ucsc.edu 37 17 26727778 26727778 + Missense_Mutation SNP G G T novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d SMYD2 56950 hgsc.bcm.edu;ucsc.edu 37 1 214488133 214488133 + Missense_Mutation SNP A A C novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d STAP1 26228 hgsc.bcm.edu;ucsc.edu 37 4 68436805 68436805 + Missense_Mutation SNP T T A novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d TNS1 7145 hgsc.bcm.edu;ucsc.edu 37 2 218673368 218673368 + Missense_Mutation SNP A A T novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d UBAP2 55833 hgsc.bcm.edu 37 9 33986810 33986810 + Missense_Mutation SNP A A T novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188243 10188243 + Missense_Mutation SNP T T C novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d ZDHHC11 79844 hgsc.bcm.edu;ucsc.edu 37 5 819652 819653 + Frame_Shift_Ins INS - - C novel TCGA-BP-4329-01A-02D-1366-10 TCGA-BP-4329-11A-01D-1366-10 - - . . . . Unknown Untested Somatic Phase_I WXS none SOLID 755f62a8-13ea-4def-b5b6-14b536c56ec2 bf401206-d93e-41a9-9daf-42e565f5307d