Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACAN 176 broad.mit.edu;hgsc.bcm.edu 37 15 89395179 89395179 + Silent SNP T T A novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b ACOX1 51 hgsc.bcm.edu 37 17 73946942 73946942 + Missense_Mutation SNP C C A novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b ANKRD36 375248 broad.mit.edu 37 2 97869931 97869931 + Missense_Mutation SNP A T T rs76309140 bycluster TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b ANPEP 290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 90340889 90340889 + Missense_Mutation SNP A A G novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b ASTN2 23245 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 119802150 119802150 + Silent SNP A A G novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b C15orf40 123207 hgsc.bcm.edu 37 15 83677270 83677270 + Missense_Mutation SNP C C A novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b C1orf173 127254 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 75037720 75037720 + Missense_Mutation SNP C C T novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b CCDC116 164592 hgsc.bcm.edu;ucsc.edu 37 22 21990822 21990822 + Silent SNP C C T rs115937546 bycluster;byfrequency;by1000genomes TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b CHD3 1107 broad.mit.edu;hgsc.bcm.edu 37 17 7806304 7806304 + Silent SNP C C T novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b CHST15 51363 hgsc.bcm.edu 37 10 125780753 125780754 + Frame_Shift_Del DEL GG GG - rs5788647 alternate_allele TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 GG GG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b COPG2 26958 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 130295934 130295934 + Silent SNP A A G novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b CXXC1 30827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 47808972 47808972 + Silent SNP G G A novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b DHX37 57647 broad.mit.edu 37 12 125465270 125465272 + In_Frame_Del DEL CTC - - novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 CTC CTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b DNTTIP2 30836 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 94343391 94343391 + Missense_Mutation SNP G G T novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b EFEMP2 30008 hgsc.bcm.edu;ucsc.edu 37 11 65637667 65637667 + Missense_Mutation SNP C C T novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b FAM116B 0 broad.mit.edu;hgsc.bcm.edu 37 22 50752245 50752245 + Missense_Mutation SNP T T G novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b FLCN 201163 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 17119744 17119744 + Frame_Shift_Del DEL A A - novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b FSTL4 23105 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 132585226 132585226 + Missense_Mutation SNP A A G novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b GPAA1 8733 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145138388 145138388 + Missense_Mutation SNP G G C novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b HMGCS2 3158 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 120307117 120307117 + Silent SNP C C A novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b HSPA12A 259217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 118464696 118464696 + Missense_Mutation SNP A A G novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b IMP5 0 hgsc.bcm.edu;ucsc.edu 37 17 43923077 43923077 + Frame_Shift_Del DEL C C - novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b KCND3 3752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 112524490 112524490 + Missense_Mutation SNP C C T novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b KIF20B 9585 broad.mit.edu;hgsc.bcm.edu 37 10 91476196 91476196 + Missense_Mutation SNP T T C novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b MAGI2 9863 hgsc.bcm.edu;ucsc.edu 37 7 78131009 78131010 + Frame_Shift_Ins INS - - C novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b MAP4 4134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47957988 47957988 + Silent SNP C C T novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b MARK2 2011 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 63668343 63668343 + Missense_Mutation SNP G G A novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b MC5R 4161 hgsc.bcm.edu;ucsc.edu 37 18 13826006 13826006 + Missense_Mutation SNP C C T novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b MLL3 58508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 151851228 151851228 + Nonsense_Mutation SNP G G T novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b MUC17 140453 broad.mit.edu;hgsc.bcm.edu 37 7 100680563 100680563 + Missense_Mutation SNP C C A novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b MYO9A 4649 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 72300251 72300251 + Missense_Mutation SNP G G C novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b OSBPL5 114879 broad.mit.edu 37 11 3150289 3150289 + Silent SNP C T T novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b PCF11 51585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 82877718 82877718 + Silent SNP T T C novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b PTPN4 5775 hgsc.bcm.edu;ucsc.edu 37 2 120690059 120690060 + Frame_Shift_Ins INS - - A novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b RFX5 5993 hgsc.bcm.edu 37 1 151315565 151315566 + Frame_Shift_Ins INS - - C novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b RRP12 23223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99120376 99120376 + Splice_Site SNP C C A novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b SERPINB5 5268 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 61154215 61154215 + Missense_Mutation SNP G G A novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b SLC12A2 6558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 127466804 127466804 + Missense_Mutation SNP G G T novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b SUPT5H 6829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39964875 39964875 + Missense_Mutation SNP T T C novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b Unknown 0 broad.mit.edu 37 15 102292785 102292785 + Missense_Mutation SNP C G G rs143389223 TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b VHL 7428 broad.mit.edu 37 3 10183714 10183720 + Frame_Shift_Del DEL CGTGCTG - - rs5030651 alternate_allele TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 CGTGCTG CGTGCTG . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b VHL 7428 hgsc.bcm.edu 37 3 10183725 10183725 + Nonsense_Mutation SNP C C A rs5030826 TCGA-BP-4961-01A-01D-1392-10 TCGA-BP-4961-11A-01D-1392-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina MiSeq a121fc07-a7cd-4561-8cff-de1d3af81e5b de2de206-b708-4406-9b05-5573e729213a VWA3A 146177 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 22162103 22162103 + Missense_Mutation SNP G G A novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b WNT7A 7476 broad.mit.edu 37 3 13921263 13921263 + Silent SNP G T T novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b ZBTB41 360023 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197169423 197169423 + Missense_Mutation SNP T T C novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b ZNF770 54989 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 35274804 35274804 + Missense_Mutation SNP A A T novel TCGA-BP-4961-01A-01D-1462-08 TCGA-BP-4961-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e2b3d42d-a775-4dfd-8d26-276487654093 f94e3b28-7dfa-4eae-98b3-9f133e05c91b