Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCA8 10351 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 66881449 66881449 + Missense_Mutation SNP A A G novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 ADPRHL1 113622 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 114107552 114107552 + Missense_Mutation SNP C C G novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 AIM1 202 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 106968602 106968602 + Silent SNP G G A novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 ANKRD13C 81573 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 70766485 70766485 + Missense_Mutation SNP C C A novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 BMS1 9790 hgsc.bcm.edu 37 10 43315792 43315792 + Frame_Shift_Del DEL T T - novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 CABLES1 91768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 20716478 20716478 + Missense_Mutation SNP C C T novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 CLCA2 9635 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 86913358 86913358 + Silent SNP T T C novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 CXorf26 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 75397644 75397644 + Silent SNP A A G novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 DHX40P1 0 broad.mit.edu 37 17 58066651 58066651 + Silent SNP C T T novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 DNAH11 8701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 21639591 21639591 + Missense_Mutation SNP C C T novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 EPS8L2 64787 broad.mit.edu 37 11 726936 726936 + Missense_Mutation SNP G C C novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 GALNT1 2589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 33272259 33272259 + Missense_Mutation SNP C C A novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 GNG3 2785 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62475843 62475843 + Nonsense_Mutation SNP G G T novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 HOXD4 3233 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 177016412 177016412 + Missense_Mutation SNP C C G novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 KANK3 256949 broad.mit.edu 37 19 8398950 8398961 + In_Frame_Del DEL TCGCTGTCGCCA - - rs111751275 bycluster;by1000genomes TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 TCGCTGTCGCCA TCGCTGTCGCCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 KCNN3 3782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154705482 154705482 + Silent SNP G G A novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 KCTD7 154881 hgsc.bcm.edu;ucsc.edu 37 7 66103415 66103415 + Frame_Shift_Del DEL A A - novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 KCTD7 154881 hgsc.bcm.edu;ucsc.edu 37 7 66103415 66103415 + Missense_Mutation SNP A A G novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 KIAA1244 57221 hgsc.bcm.edu;ucsc.edu 37 6 138601236 138601236 + Frame_Shift_Del DEL T T - novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 MAPKBP1 23005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42108803 42108803 + Missense_Mutation SNP C C A novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 NAV1 89796 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201751584 201751584 + Silent SNP C C T novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 NCAN 1463 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19329874 19329874 + Missense_Mutation SNP G G T novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 NCKAP5 344148 broad.mit.edu;ucsc.edu 37 2 133540492 133540492 + Missense_Mutation SNP G A A novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 NOL8 55035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 95077535 95077535 + Missense_Mutation SNP C C T novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 NXPH4 11247 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57619419 57619419 + Silent SNP G G A novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 OGFR 11054 hgsc.bcm.edu 37 20 61444720 61444720 + Missense_Mutation SNP A A C rs79127826 TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 OGFR 11054 hgsc.bcm.edu 37 20 61444725 61444725 + Silent SNP G G A rs74520364 TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 PAR4 347745 broad.mit.edu;hgsc.bcm.edu 37 15 25456944 25456944 + RNA SNP G G A novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 PLA2G4F 255189 broad.mit.edu;hgsc.bcm.edu 37 15 42446347 42446347 + Silent SNP G G A novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 PPBPL2 0 broad.mit.edu 37 4 74919821 74919821 + RNA SNP G T T novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 PTCHD2 57540 broad.mit.edu;ucsc.edu 37 1 11579432 11579432 + Missense_Mutation SNP G A A novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 RBM8A 9939 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 145508564 145508564 + Missense_Mutation SNP A A C novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 RFWD2 64326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 176055007 176055007 + Missense_Mutation SNP T T C novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 SKIV2L 6499 broad.mit.edu;hgsc.bcm.edu 37 6 31928014 31928014 + Missense_Mutation SNP C C T rs146717555 TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 SMOC1 64093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 70459140 70459140 + Missense_Mutation SNP G G A novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 SPIB 6689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50926877 50926877 + Missense_Mutation SNP G G A novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 SRGAP1 57522 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 64377783 64377783 + Nonsense_Mutation SNP C C T novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 TBC1D24 57465 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2546654 2546654 + Missense_Mutation SNP A A G novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 TBXA2R 6915 broad.mit.edu 37 19 3600380 3600380 + Missense_Mutation SNP C T T novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 TECPR2 9895 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 102901086 102901086 + Silent SNP C C T novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 TIMM44 10469 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 7999040 7999040 + Silent SNP C C T novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 TOB1 10140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48941286 48941286 + Silent SNP T T C novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 TSSK6 83983 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19625999 19625999 + Missense_Mutation SNP C C T novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 UBR7 55148 hgsc.bcm.edu;ucsc.edu 37 14 93686659 93686659 + Frame_Shift_Del DEL A A - novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188246 10188246 + Missense_Mutation SNP T T A novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 WASH2P 375260 broad.mit.edu 37 2 114355998 114355998 + Missense_Mutation SNP C G G rs17857355 byfrequency TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 WNT7B 7477 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 46319160 46319160 + Missense_Mutation SNP C C T novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 ZNF304 57343 hgsc.bcm.edu;ucsc.edu 37 19 57865095 57865095 + Frame_Shift_Del DEL T T - novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8 ZNF480 147657 broad.mit.edu;hgsc.bcm.edu 37 19 52825621 52825621 + Missense_Mutation SNP G G A novel TCGA-BP-5177-01A-01D-1429-08 TCGA-BP-5177-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ad4cc7e3-c4d1-4cc0-9c93-33b47dadaaae 5b505dca-8443-4884-90a8-4514479783f8