Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCB1 5243 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 87183102 87183102 + Missense_Mutation SNP T T C novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 ALPK2 115701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 56205081 56205081 + Missense_Mutation SNP C C T novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 C11orf2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64875906 64875906 + Silent SNP C C A novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 CACHD1 57685 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 65117974 65117974 + Silent SNP T T C novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 CDK5RAP1 51654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 31946924 31946924 + Silent SNP G G A novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 CHRNA1 1134 hgsc.bcm.edu;ucsc.edu 37 2 175614765 175614767 + In_Frame_Del DEL AAC AAC - novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 AAC AAC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 CSPP1 79848 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 68007701 68007701 + Missense_Mutation SNP A A T novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 EBAG9 9166 broad.mit.edu;ucsc.edu 37 8 110567065 110567065 + Silent SNP G A A novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 ELOVL1 64834 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 43829743 43829743 + Silent SNP C C T novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 FDXACB1 91893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 111749783 111749783 + Missense_Mutation SNP T T C novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 FGF13 2258 broad.mit.edu;ucsc.edu 37 X 137715047 137715047 + Silent SNP G A A novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 GOLGA6L5 374650 broad.mit.edu 37 15 85056021 85056021 + RNA SNP T C C rs1062001 TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 GRIA4 2893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 105842733 105842733 + Missense_Mutation SNP G G A novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 HBB 3043 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5247899 5247899 + Missense_Mutation SNP C C A rs121909804 alternate_allele TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 HERC5 51191 broad.mit.edu;hgsc.bcm.edu 37 4 89425491 89425491 + Silent SNP C C T novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 HMGB3L1 0 broad.mit.edu 37 20 33421797 33421797 + RNA DEL T - - novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 KCNH7 90134 broad.mit.edu;hgsc.bcm.edu 37 2 163253263 163253263 + Missense_Mutation SNP T T G novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 KCNN4 3783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44273604 44273604 + Missense_Mutation SNP C C T novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 NCAPD3 23310 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 134062791 134062791 + Missense_Mutation SNP C C T novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 NRG2 9542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 139232130 139232130 + Silent SNP G G A novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 OLFM2 93145 hgsc.bcm.edu;ucsc.edu 37 19 9968474 9968475 + Frame_Shift_Ins INS - - AT novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52613123 52613123 + Frame_Shift_Del DEL A A - novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 A A A - A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 PCF11 51585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 82877723 82877723 + Missense_Mutation SNP A A G novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 PIPSL 266971 broad.mit.edu 37 10 95719506 95719506 + Missense_Mutation SNP T G G novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 PMVK 10654 broad.mit.edu 37 1 154904889 154904889 + Missense_Mutation SNP A T T novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 PRKD1 5587 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 30066775 30066775 + Missense_Mutation SNP C C A novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 SPEG 10290 hgsc.bcm.edu 37 2 220331989 220331990 + Frame_Shift_Ins INS - - G novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 THAP9 79725 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 83839957 83839957 + Missense_Mutation SNP T T A novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 TRPV4 59341 broad.mit.edu;hgsc.bcm.edu 37 12 110226511 110226511 + Silent SNP G G A novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 TRPV4 59341 hgsc.bcm.edu 37 12 110226512 110226512 + Missense_Mutation SNP G G C novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 TSNARE1 203062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 143412303 143412303 + Silent SNP G G A novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 UBE2O 63893 hgsc.bcm.edu 37 17 74387548 74387549 + Frame_Shift_Ins INS - - C novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 UNC93A 54346 broad.mit.edu;ucsc.edu 37 6 167721380 167721380 + Missense_Mutation SNP T C C novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 Unknown 0 broad.mit.edu 37 1 243251423 243251423 + RNA DEL A - - novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 UTRN 7402 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 145103091 145103091 + Missense_Mutation SNP T T A novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188284 10188287 + Frame_Shift_Del DEL GACG GACG - novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 GACG GACG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 ZC3H13 23091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 46584527 46584527 + Silent SNP A A G novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04 ZNF592 9640 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 85326331 85326331 + Missense_Mutation SNP G G T novel TCGA-BP-5184-01A-01D-1429-08 TCGA-BP-5184-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ddebed14-f47f-46e6-ac39-c74ed3363211 5d1f5125-65c2-4c47-843d-da1c531fdb04