Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADAM19 8728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 156923994 156923994 + Missense_Mutation SNP A A T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 ANKRD11 29123 hgsc.bcm.edu;ucsc.edu 37 16 89350692 89350692 + Frame_Shift_Del DEL G G - novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 ARHGAP11B 89839 broad.mit.edu 37 15 30938483 30938483 + RNA SNP T C C rs145453249 by1000genomes TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 ARHGAP15 55843 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 143913197 143913197 + Silent SNP C C T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 ATP12A 479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 25284712 25284712 + Missense_Mutation SNP T T A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 BMPR2 659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 203407042 203407042 + Missense_Mutation SNP G G T rs146957466 alternate_allele TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 BTNL2 56244 hgsc.bcm.edu 37 6 32370970 32370970 + Frame_Shift_Del DEL G G - rs139418003 bycluster;by1000genomes TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 C11orf41 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 33565157 33565157 + Missense_Mutation SNP C C A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 C20orf106 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 55101052 55101052 + Nonsense_Mutation SNP C C T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 CCDC41 51134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 94772632 94772632 + Missense_Mutation SNP C C T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 CD109 135228 broad.mit.edu;ucsc.edu 37 6 74516670 74516670 + Missense_Mutation SNP A C C novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 CNR2 1269 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 24201824 24201824 + Missense_Mutation SNP T T A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 CORO2A 7464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 100899899 100899899 + Missense_Mutation SNP G G C novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 CPAMD8 27151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17003921 17003921 + Missense_Mutation SNP A A C novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A A C A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 CSMD3 114788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 113323219 113323219 + Missense_Mutation SNP G G A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 DIAPH1 1729 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140954549 140954549 + Silent SNP G G T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 DOT1L 84444 broad.mit.edu;ucsc.edu 37 19 2229790 2229790 + Nonstop_Mutation SNP A C C novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 DPYSL4 10570 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 134012456 134012456 + Silent SNP C C A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 DUS2L 54920 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68109279 68109279 + Silent SNP C C A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 EMID2 136227 broad.mit.edu 37 7 101006350 101006350 + Missense_Mutation SNP T G G novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 FANCE 2178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 35423912 35423912 + Missense_Mutation SNP G G A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 FAT3 120114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 92531032 92531032 + Missense_Mutation SNP C C T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 FBN1 2200 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 48782117 48782117 + Nonsense_Mutation SNP C C A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 FKBP11 51303 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49315838 49315838 + Nonsense_Mutation SNP T T A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 GRM7 2917 broad.mit.edu;ucsc.edu 37 3 6903262 6903262 + Missense_Mutation SNP A C C novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 GTF3C1 2975 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 27523128 27523128 + Silent SNP T T C novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 HERC1 8925 hgsc.bcm.edu;ucsc.edu 37 15 63955309 63955310 + Frame_Shift_Ins INS - - TT novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 HIBADH 11112 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 27570888 27570888 + Missense_Mutation SNP G G T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 HSPA6 3310 hgsc.bcm.edu 37 1 161495527 161495527 + Missense_Mutation SNP A A T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 KCNJ3 3760 broad.mit.edu 37 2 155555946 155555946 + Missense_Mutation SNP A C C novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 KIAA1147 57189 broad.mit.edu 37 7 141364002 141364002 + Missense_Mutation SNP T C C novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 LAMC2 3918 broad.mit.edu;hgsc.bcm.edu 37 1 183195848 183195848 + Missense_Mutation SNP A A C novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 LOC284232 0 broad.mit.edu 37 13 19433013 19433013 + RNA SNP G A A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 LRIG3 121227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 59268041 59268041 + Frame_Shift_Del DEL A A - novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 LRP12 29967 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 105507335 105507335 + Silent SNP A A T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 LRPPRC 10128 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 44145201 44145201 + Missense_Mutation SNP T T A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 MACF1 23499 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 39908131 39908131 + Silent SNP C C A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 MGAT4B 11282 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179225513 179225513 + Silent SNP G G A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 MTMR14 64419 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 9724925 9724925 + Missense_Mutation SNP G G A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 MTMR9 66036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 11142463 11142463 + Silent SNP C C T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 MUC4 4585 broad.mit.edu 37 3 195505830 195505830 + Silent SNP G C C novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 MYO10 4651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 16701663 16701663 + Silent SNP G G A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 NOL11 25926 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 65718733 65718733 + Missense_Mutation SNP T T G novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 NPHP1 4867 broad.mit.edu;hgsc.bcm.edu 37 2 110926096 110926096 + Missense_Mutation SNP G G T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 OR4Q3 441669 broad.mit.edu;hgsc.bcm.edu 37 14 20216035 20216035 + Missense_Mutation SNP G G T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 P2RX2 22953 hgsc.bcm.edu;ucsc.edu 37 12 133198066 133198067 + Frame_Shift_Ins INS - - A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52623121 52623122 + Frame_Shift_Del DEL AT AT - novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 AT AT AT - AT AT Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 PCDHA12 56137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140256882 140256882 + Missense_Mutation SNP T T C novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 PCNX 22990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 71462626 71462626 + Silent SNP T T C novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 PEG3 5178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57325778 57325778 + Missense_Mutation SNP G G C novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 PI4KA 5297 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 21075676 21075676 + Missense_Mutation SNP C C T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 PIP5KL1 138429 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 130687392 130687392 + Missense_Mutation SNP G G C rs149767177 byfrequency;alternate_allele TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 PKP2 5318 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 32976979 32976979 + Missense_Mutation SNP C C G novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 PLOD2 5352 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 145788846 145788846 + Missense_Mutation SNP C C T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 POLG2 11232 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 62479086 62479086 + Missense_Mutation SNP T T C rs146731596 TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 POM121 9883 broad.mit.edu;hgsc.bcm.edu 37 7 72398925 72398925 + Missense_Mutation SNP G G A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 PVRL3 25945 broad.mit.edu 37 3 110837556 110837556 + Missense_Mutation SNP A T T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 RPAP1 26015 broad.mit.edu 37 15 41815528 41815528 + Missense_Mutation SNP G T T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 RPAP1 26015 hgsc.bcm.edu;ucsc.edu 37 15 41819689 41819689 + Frame_Shift_Del DEL C C - novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 RSF1 51773 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 77412360 77412360 + Nonsense_Mutation SNP A A T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 RTN2 6253 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 45997672 45997672 + Missense_Mutation SNP T T C novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47084168 47084175 + Frame_Shift_Del DEL TTATTTGT TTATTTGT - novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 TTATTTGT TTATTTGT TTATTTGT - TTATTTGT TTATTTGT Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 SLC24A4 123041 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 92958092 92958092 + Nonsense_Mutation SNP C C T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 SLC4A1 6521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42333125 42333125 + Silent SNP G G A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 TAF2 6873 hgsc.bcm.edu;ucsc.edu 37 8 120744220 120744221 + Frame_Shift_Ins INS - - A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 TMEM132E 124842 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 32954049 32954049 + Missense_Mutation SNP G G A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 TMPRSS6 164656 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 37462221 37462221 + Missense_Mutation SNP C C G novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179634604 179634604 + Nonsense_Mutation SNP C C A rs143767300 alternate_allele TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 Unknown 0 broad.mit.edu 37 19 20975384 20975384 + RNA SNP G C C novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 Unknown 0 broad.mit.edu 37 3 126916008 126916008 + Silent SNP T C C novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 USP22 23326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 20911265 20911265 + Missense_Mutation SNP C C T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 VHL 7428 hgsc.bcm.edu 37 3 10191489 10191492 + Frame_Shift_Del DEL GATG GATG - novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 GATG GATG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 WDR36 134430 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 110434508 110434508 + Missense_Mutation SNP T T G novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 WDR64 128025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 241886621 241886621 + Missense_Mutation SNP G G T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 WIPF2 147179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 38420931 38420931 + Missense_Mutation SNP C C T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 XIRP2 129446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 168099752 168099752 + Missense_Mutation SNP C C A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 YEATS4 8089 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 69764550 69764550 + Missense_Mutation SNP C C G novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 ZNF267 10308 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31927436 31927436 + Missense_Mutation SNP T T G novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 ZNF616 90317 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52618234 52618234 + Missense_Mutation SNP C C T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 ZNF841 284371 broad.mit.edu 37 19 52570738 52570738 + Nonsense_Mutation SNP C A A novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 ZNFX1 57169 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47887879 47887879 + Missense_Mutation SNP G G C novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 ZSCAN2 54993 broad.mit.edu 37 15 85147434 85147434 + Silent SNP A T T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82 CDH23 64072 broad.mit.edu 37 10 73499530 73499530 + Splice_Site SNP G T T novel TCGA-BP-5198-01A-01D-1429-08 TCGA-BP-5198-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 . . Illumina GAIIx ac66d658-97d4-416b-8028-0077a1c8a01d 7c55a5d6-c39b-465f-9ff9-bdb754beea82