Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACACA 31 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 35600351 35600351 + Missense_Mutation SNP T T C novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b ACAP1 9744 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7246741 7246741 + Missense_Mutation SNP G G A novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b ACTRT2 140625 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 2938986 2938986 + Missense_Mutation SNP G G A novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b ASTN2 23245 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 119976970 119976970 + Missense_Mutation SNP A A G novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b BIN2 51411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 51696509 51696509 + Silent SNP G G A novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b BTG2 7832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 203276485 203276485 + Nonsense_Mutation SNP T T A novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b C4orf23 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 8469669 8469669 + Missense_Mutation SNP A A G novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b CAND1 55832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 67698394 67698394 + Missense_Mutation SNP A A G novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b CATSPER4 378807 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 26517881 26517881 + Missense_Mutation SNP C C T novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b CCDC87 55231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 66359599 66359599 + Missense_Mutation SNP C C A novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b CIT 11113 hgsc.bcm.edu;ucsc.edu 37 12 120173115 120173115 + Missense_Mutation SNP G G T rs79892909 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b COL6A6 131873 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 130283940 130283940 + Missense_Mutation SNP G G T novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b CSPP1 79848 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 68107615 68107615 + Splice_Site SNP A A G novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b CYP19A1 1588 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51520122 51520122 + Missense_Mutation SNP C C G novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b DNAJC30 84277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 73097664 73097664 + Silent SNP G G A novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b EPM2AIP1 9852 hgsc.bcm.edu 37 3 37032775 37032775 + Silent SNP A A T novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b FBXO2 26232 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11709907 11709907 + Missense_Mutation SNP A A C novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b FOXRED2 80020 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 36900193 36900193 + Missense_Mutation SNP C C T novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b FRAS1 80144 broad.mit.edu;hgsc.bcm.edu 37 4 79296891 79296891 + Splice_Site SNP A A T novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b GABRG1 2565 hgsc.bcm.edu 37 4 46043264 46043264 + Missense_Mutation SNP G G T novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b HDAC10 83933 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50685358 50685358 + Missense_Mutation SNP G G A novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b HRNR 388697 broad.mit.edu;hgsc.bcm.edu 37 1 152185823 152185823 + Missense_Mutation SNP C C A rs41266120 byfrequency;by1000genomes;alternate_allele TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b IGF1R 3480 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 99482525 99482525 + Silent SNP C C T novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b KDM5C 8242 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 53253992 53253992 + Frame_Shift_Del DEL G G - novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G G - G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b KRI1 65095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10668296 10668296 + Missense_Mutation SNP C C G novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b LAMB1 3912 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 107564469 107564469 + Missense_Mutation SNP C C G novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b LOC222699 0 broad.mit.edu 37 6 28185356 28185356 + RNA DEL G - - rs10694454 alternate_allele TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b LOC441666 441666 broad.mit.edu 37 10 42832122 42832122 + RNA SNP C T T novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b MARS 4141 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57908819 57908819 + Missense_Mutation SNP A A G novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9069219 9069219 + Missense_Mutation SNP G G A novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b NIT1 4817 hgsc.bcm.edu;ucsc.edu 37 1 161089670 161089683 + Frame_Shift_Del DEL GCCTATGTGTGAAA GCCTATGTGTGAAA - novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 GCCTATGTGTGAAA GCCTATGTGTGAAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b NPNT 255743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 106848559 106848561 + In_Frame_Del DEL GTT GTT - novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 GTT GTT GTT - GTT GTT Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b NUDT11 55190 broad.mit.edu 37 X 51239296 51239309 + Translation_Start_Site DEL TCCTCGAGGCAGCC - - novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 TCCTCGAGGCAGCC TCCTCGAGGCAGCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b OPTC 26254 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 203465247 203465247 + Silent SNP C C T rs139083417 byfrequency TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b OR13C5 138799 broad.mit.edu;hgsc.bcm.edu 37 9 107361334 107361334 + Missense_Mutation SNP C C G novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b PLEKHG3 26030 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 65208079 65208079 + Missense_Mutation SNP G G A novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b RCOR3 55758 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 211486237 211486237 + Silent SNP T T A novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b RP1L1 94137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 10470413 10470413 + Missense_Mutation SNP C C T novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b SPZ1 84654 broad.mit.edu 37 5 79616434 79616434 + Missense_Mutation SNP G A A novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b SPZ1 84654 broad.mit.edu;hgsc.bcm.edu 37 5 79616440 79616440 + Missense_Mutation SNP G G C novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b SRL 6345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4245640 4245640 + Missense_Mutation SNP C C T novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b STL 7955 broad.mit.edu;hgsc.bcm.edu 37 6 125231888 125231888 + RNA SNP T T G novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b Unknown 0 broad.mit.edu 37 1 227618218 227618218 + RNA SNP G T T novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b USP16 10600 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 30415852 30415852 + Missense_Mutation SNP G G T novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b ZNF276 92822 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 89793740 89793740 + Missense_Mutation SNP G G C novel TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b FGFR2 2263 broad.mit.edu 37 10 123353298 123353298 + Missense_Mutation SNP C T T rs143978938 by1000genomes TCGA-BP-5202-01A-02D-1429-08 TCGA-BP-5202-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 . . Illumina GAIIx accc7214-d441-4a72-a2eb-9f2811c38a3e 222d710e-2151-4a97-aede-2e7c58707b5b