Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AASS 10157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 121766489 121766489 + Nonsense_Mutation SNP T T A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 ABCD2 225 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 39980001 39980001 + Missense_Mutation SNP C C G rs151149571 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 ANK2 287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 114290829 114290829 + Silent SNP A A T novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 ANKRD17 26057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 73956463 73956463 + Silent SNP T T A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 ANO2 57101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 5672713 5672713 + Missense_Mutation SNP C C T novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 APOB 338 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 21242762 21242762 + Missense_Mutation SNP C C A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 ATP1A1 476 broad.mit.edu 37 1 116941357 116941357 + Missense_Mutation SNP G A A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 ATP7A 538 hgsc.bcm.edu 37 X 77284798 77284799 + Frame_Shift_Ins INS - - A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52443574 52443574 + Nonsense_Mutation SNP G G A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 BCAS3 54828 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 58786584 58786584 + Silent SNP A A T novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 BMP7 655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 55803435 55803435 + Missense_Mutation SNP C C A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 BTNL9 153579 broad.mit.edu;hgsc.bcm.edu 37 5 180475150 180475150 + Silent SNP C C T rs112433732 bycluster TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 CACNA1C 775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 2778099 2778099 + Missense_Mutation SNP C C T novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 CACNA1G 8913 hgsc.bcm.edu 37 17 48692787 48692788 + Frame_Shift_Ins INS - - CC novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 CAPN11 11131 hgsc.bcm.edu 37 6 44140054 44140055 + Frame_Shift_Ins INS - - GGCTGCC novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 CD86 942 broad.mit.edu;ucsc.edu 37 3 121825286 121825286 + Missense_Mutation SNP G C C novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 CECR2 27443 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 17978494 17978494 + Missense_Mutation SNP G G T novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 CLCA1 1179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 86957042 86957042 + Silent SNP G G A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 CNOT1 23019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 58571103 58571106 + Frame_Shift_Del DEL TACT TACT - novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 TACT TACT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 COL14A1 7373 hgsc.bcm.edu;ucsc.edu 37 8 121259910 121259910 + Silent SNP C C T novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 COL22A1 169044 hgsc.bcm.edu 37 8 139824126 139824127 + In_Frame_Ins INS - - GGTGGA novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 COL4A5 1287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 107924995 107924995 + Missense_Mutation SNP C C T novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 DENND1C 79958 broad.mit.edu;ucsc.edu 37 19 6467951 6467951 + Missense_Mutation SNP G C C novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 DPP4 1803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 162894910 162894910 + Missense_Mutation SNP A A C novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 DYSF 8291 broad.mit.edu 37 2 71801334 71801335 + In_Frame_Ins INS - AGGCGG AGGCGG novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 EPHB6 2051 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 142563846 142563846 + Missense_Mutation SNP G G T novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 ETV6 2120 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 11905414 11905414 + Missense_Mutation SNP A A T novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 FAM47A 158724 hgsc.bcm.edu 37 X 34149658 34149693 + In_Frame_Del DEL ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG - novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 FAM59A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 29867878 29867878 + Missense_Mutation SNP G G C novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 FMN2 56776 hgsc.bcm.edu 37 1 240371112 240371112 + Silent SNP G G T rs71646889 bycluster;by1000genomes TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 GPR98 84059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 89989763 89989763 + Missense_Mutation SNP T T A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 HECTD1 25831 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 31613394 31613394 + Missense_Mutation SNP T T G novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 HK2 3099 broad.mit.edu;ucsc.edu 37 2 75107668 75107668 + Silent SNP C T T novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 HMGXB3 22993 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149431465 149431465 + Missense_Mutation SNP T T A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 HOOK2 29911 broad.mit.edu 37 19 12883813 12883813 + Missense_Mutation SNP G C C novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 HTR1F 3355 hgsc.bcm.edu;ucsc.edu 37 3 88040822 88040823 + Frame_Shift_Ins INS - - T novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 IL33 90865 broad.mit.edu;ucsc.edu 37 9 6251225 6251225 + Silent SNP C G G novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 JMJD6 23210 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74720100 74720100 + Missense_Mutation SNP G G T novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G G T G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 KCNJ18 100134444 hgsc.bcm.edu 37 17 21319527 21319527 + Silent SNP C C T rs80022364 bycluster;byfrequency TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 KCNJ18 100134444 hgsc.bcm.edu 37 17 21319743 21319743 + Silent SNP A A G rs76267885 byfrequency TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 KCNV2 169522 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 2729659 2729659 + Missense_Mutation SNP G G A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 KIAA0586 9786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 58949396 58949396 + Missense_Mutation SNP C C T novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 KL 9365 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 33634984 33634984 + Missense_Mutation SNP G G A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 KLHDC5 57542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 27933951 27933951 + Missense_Mutation SNP T T C novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 KRT4 3851 hgsc.bcm.edu 37 12 53207602 53207603 + Frame_Shift_Ins INS - - G novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 MATN2 4147 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 99028778 99028778 + Silent SNP T T C novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 MCM3AP 8888 broad.mit.edu;hgsc.bcm.edu 37 21 47692488 47692488 + Missense_Mutation SNP C C T novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 MOAP1 64112 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 93650048 93650050 + In_Frame_Del DEL TTC TTC - novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 TTC TTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 MSMP 692094 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35753713 35753713 + Missense_Mutation SNP G G A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 MUTYH 4595 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 45796978 45796978 + Missense_Mutation SNP A A G novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 NBPF10 100132406 broad.mit.edu 37 1 145302695 145302695 + Missense_Mutation SNP C T T novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 NEIL3 55247 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 178283613 178283613 + Silent SNP T T A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 NF2 4771 broad.mit.edu;hgsc.bcm.edu 37 22 30050715 30050715 + Splice_Site SNP G G C novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 NKD1 85407 broad.mit.edu;ucsc.edu 37 16 50664121 50664121 + Missense_Mutation SNP A G G novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 OR10H5 284433 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 15904911 15904911 + Missense_Mutation SNP C C G novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 OR4C12 283093 broad.mit.edu;hgsc.bcm.edu 37 11 50003858 50003858 + Silent SNP G G A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 PALM2-AKAP2 445815 hgsc.bcm.edu 37 9 112900341 112900342 + In_Frame_Ins INS - - GAAGCT novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 PEG3 5178 broad.mit.edu;ucsc.edu 37 19 57330017 57330017 + Missense_Mutation SNP G T T rs80150589 bycluster;byfrequency;by1000genomes TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 PER1 5187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 8047092 8047092 + Missense_Mutation SNP T T C novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 PHF15 23338 hgsc.bcm.edu 37 5 133895609 133895610 + Frame_Shift_Ins INS - - C novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 PLIN4 729359 hgsc.bcm.edu;ucsc.edu 37 19 4512636 4512636 + Missense_Mutation SNP A A C rs140230284 by1000genomes TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 PREX1 57580 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47309286 47309286 + Missense_Mutation SNP G G C novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 PSMA8 143471 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 23714010 23714010 + Silent SNP G G A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 PTPMT1 114971 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 47593082 47593082 + Missense_Mutation SNP C C A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 QSOX1 5768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 180165532 180165532 + Missense_Mutation SNP T T G novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 RELN 5649 hgsc.bcm.edu;ucsc.edu 37 7 103243784 103243793 + Frame_Shift_Del DEL GACACCACAC GACACCACAC - novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 GACACCACAC GACACCACAC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 RLF 6018 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 40704122 40704122 + Missense_Mutation SNP G G A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 SCRN1 9805 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 29963599 29963599 + Missense_Mutation SNP C C A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 SEC24C 9632 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75520019 75520019 + Missense_Mutation SNP G G A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 SEMA5A 9037 hgsc.bcm.edu;ucsc.edu 37 5 9122825 9122825 + Frame_Shift_Del DEL G G - novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 SETD5 55209 hgsc.bcm.edu 37 3 9517686 9517686 + Missense_Mutation SNP T T C novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 SLC7A4 6545 broad.mit.edu 37 22 21385373 21385373 + Silent SNP G C C novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 SLFN11 91607 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 33690266 33690266 + Silent SNP C C T novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 SORBS2 8470 broad.mit.edu;hgsc.bcm.edu 37 4 186508841 186508841 + Silent SNP C C T novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 SPTAN1 6709 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131371420 131371420 + Nonsense_Mutation SNP C C T novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 SYNE1 23345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 152647465 152647465 + Missense_Mutation SNP G G A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 TMEM87A 25963 broad.mit.edu;ucsc.edu 37 15 42529668 42529668 + Missense_Mutation SNP T A A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 Unknown 0 broad.mit.edu 37 15 76074470 76074470 + Missense_Mutation SNP A G G novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 Unknown 0 broad.mit.edu 37 22 18846005 18846005 + RNA SNP G A A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 USP51 158880 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 55514571 55514571 + Missense_Mutation SNP C C T novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188218 10188218 + Missense_Mutation SNP G G T novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 XKR6 286046 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 10782282 10782282 + Missense_Mutation SNP G G A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 YLPM1 56252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 75279329 75279329 + Splice_Site SNP A A G novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 ZCCHC16 340595 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 111698754 111698754 + Silent SNP C C T novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 ZNF611 81856 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53209500 53209500 + Missense_Mutation SNP G G A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086 ZNF844 284391 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 12186656 12186656 + Missense_Mutation SNP C C A novel TCGA-CJ-4638-01A-02D-1386-10 TCGA-CJ-4638-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cbc187b0-fafe-4b1f-9af0-6714942414ab e87fd364-fa8b-43c5-a572-8b136f8f2086