Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AFF1 4299 hgsc.bcm.edu;ucsc.edu 37 4 88053496 88053496 + Missense_Mutation SNP A A G novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c AKAP13 11214 hgsc.bcm.edu;ucsc.edu 37 15 86198698 86198698 + Silent SNP C C T novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c APPL1 26060 hgsc.bcm.edu 37 3 57291024 57291024 + Missense_Mutation SNP G G C novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c B4GALT6 9331 hgsc.bcm.edu;ucsc.edu 37 18 29218625 29218625 + Silent SNP C C T novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c BRDT 676 hgsc.bcm.edu;ucsc.edu 37 1 92442700 92442700 + Missense_Mutation SNP T T C rs192529642 by1000genomes TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c BRE 9577 hgsc.bcm.edu 37 2 28117424 28117424 + Missense_Mutation SNP A A G novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c C2orf85 0 hgsc.bcm.edu 37 2 242815059 242815059 + Missense_Mutation SNP C C T rs28368764 byfrequency;by1000genomes TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c CCDC120 90060 hgsc.bcm.edu 37 X 48919830 48919830 + Missense_Mutation SNP T T G novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c CCDC87 55231 hgsc.bcm.edu 37 11 66359725 66359725 + Silent SNP G G A novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c COG4 25839 hgsc.bcm.edu;ucsc.edu 37 16 70546246 70546246 + Nonsense_Mutation SNP T T A novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c CUL3 8452 hgsc.bcm.edu;ucsc.edu 37 2 225379414 225379414 + Missense_Mutation SNP C C T novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c DNAH11 8701 hgsc.bcm.edu 37 7 21742417 21742417 + Missense_Mutation SNP T T G novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c EPHA1 2041 hgsc.bcm.edu;ucsc.edu 37 7 143090819 143090819 + Missense_Mutation SNP C C G novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c FRRS1 391059 hgsc.bcm.edu;ucsc.edu 37 1 100214290 100214290 + Missense_Mutation SNP A A C novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c GAPVD1 26130 hgsc.bcm.edu;ucsc.edu 37 9 128069788 128069788 + Missense_Mutation SNP A A G novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c GOPC 57120 hgsc.bcm.edu;ucsc.edu 37 6 117900162 117900162 + Missense_Mutation SNP T T A novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c HEATR5A 25938 hgsc.bcm.edu;ucsc.edu 37 14 31819067 31819067 + Missense_Mutation SNP G G A novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c IL9 3578 hgsc.bcm.edu 37 5 135228122 135228122 + Silent SNP A A G novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c IPO9 55705 hgsc.bcm.edu 37 1 201827588 201827588 + Missense_Mutation SNP A A G novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c ITPR1 3708 hgsc.bcm.edu;ucsc.edu 37 3 4730230 4730230 + Nonsense_Mutation SNP C C T novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c KDM4B 23030 hgsc.bcm.edu 37 19 5077475 5077475 + Missense_Mutation SNP C C A novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c KIF16B 55614 hgsc.bcm.edu 37 20 16359582 16359582 + Missense_Mutation SNP T T C rs34336583 bycluster;byfrequency;by1000genomes TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c KIF20B 9585 hgsc.bcm.edu 37 10 91469727 91469727 + Missense_Mutation SNP G G C novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c KIF2C 11004 hgsc.bcm.edu 37 1 45205617 45205617 + Missense_Mutation SNP T T G novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c KLK13 26085 hgsc.bcm.edu 37 19 51561875 51561875 + Missense_Mutation SNP A A G novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c LAIR2 3904 hgsc.bcm.edu 37 19 55020248 55020248 + Missense_Mutation SNP G G C rs12949 by1000genomes TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c LMNB1 4001 hgsc.bcm.edu;ucsc.edu 37 5 126154654 126154654 + Missense_Mutation SNP T T C novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c LRRK2 120892 hgsc.bcm.edu;ucsc.edu 37 12 40714842 40714844 + In_Frame_Del DEL TGA TGA - novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 TGA TGA . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c MKS1 54903 hgsc.bcm.edu;ucsc.edu 37 17 56283700 56283700 + Missense_Mutation SNP C C G novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c MRGPRF 116535 hgsc.bcm.edu 37 11 68777323 68777323 + Missense_Mutation SNP T T C rs11544721 bycluster;byfrequency;by1000genomes TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c NSUN4 387338 hgsc.bcm.edu 37 1 46806550 46806550 + Missense_Mutation SNP C C T rs41293277 bycluster;byfrequency;by1000genomes TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c OR2T12 127064 hgsc.bcm.edu 37 1 248458736 248458736 + Missense_Mutation SNP A A G rs28409263 bycluster;byfrequency;by1000genomes TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c PIK3R5 23533 hgsc.bcm.edu 37 17 8791992 8791992 + Missense_Mutation SNP A A C novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c PRKCA 5578 hgsc.bcm.edu 37 17 64800059 64800059 + Silent SNP T T C novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c PRX 57716 hgsc.bcm.edu 37 19 40902439 40902439 + Missense_Mutation SNP T T C novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c RAI14 26064 hgsc.bcm.edu;ucsc.edu 37 5 34824236 34824236 + Silent SNP G G C novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c RUNX2 860 hgsc.bcm.edu 37 6 45514873 45514873 + Missense_Mutation SNP C C A rs144852234 alternate_allele TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c SMARCC1 6599 hgsc.bcm.edu;ucsc.edu 37 3 47712153 47712153 + Missense_Mutation SNP G G C novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c SOHLH2 54937 hgsc.bcm.edu;ucsc.edu 37 13 36748941 36748941 + Missense_Mutation SNP T T C novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c SSC5D 284297 hgsc.bcm.edu 37 19 56029914 56029916 + In_Frame_Del DEL CCA CCA - rs140718732 by1000genomes TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 CCA CCA . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c ST6GALNAC2 10610 hgsc.bcm.edu;ucsc.edu 37 17 74562266 74562266 + Missense_Mutation SNP C C T novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c TBCB 1155 hgsc.bcm.edu;ucsc.edu 37 19 36611673 36611673 + Missense_Mutation SNP A A T novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c TECPR1 25851 hgsc.bcm.edu 37 7 97870246 97870246 + Missense_Mutation SNP C C A novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c TMEM186 25880 hgsc.bcm.edu 37 16 8889990 8889990 + Missense_Mutation SNP G G T novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c TRAF3 7187 hgsc.bcm.edu 37 14 103357741 103357741 + Missense_Mutation SNP C C G novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c ZDHHC1 29800 hgsc.bcm.edu 37 16 67428940 67428940 + Nonsense_Mutation SNP T T A novel TCGA-CJ-4876-01A-01D-1373-10 TCGA-CJ-4876-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 852c4bf6-3ec9-4070-8e5f-78d12686ccac dc4d5943-3138-4ed1-a452-21dbd520c16c