Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABO 28 broad.mit.edu 37 9 136131057 136131057 + Frame_Shift_Del DEL G - - rs150311214 by1000genomes TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb ADAM6 8755 broad.mit.edu 37 14 106372754 106372754 + Splice_Site SNP C T T rs80059406 TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb AKAP3 10566 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 4747326 4747326 + Nonsense_Mutation SNP C C A novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb ASXL3 80816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 31320355 31320355 + Missense_Mutation SNP C C A novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb C11orf63 79864 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 122817268 122817268 + Missense_Mutation SNP A A T novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb CAPN11 11131 hgsc.bcm.edu 37 6 44140054 44140055 + Frame_Shift_Ins INS - - GGCTGCC novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb CCDC155 147872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49912528 49912528 + Missense_Mutation SNP G G C novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb CENPE 1062 broad.mit.edu;ucsc.edu 37 4 104097155 104097155 + Nonsense_Mutation SNP C A A novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb COCH 1690 hgsc.bcm.edu 37 14 31358882 31358883 + Frame_Shift_Ins INS - - T novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb CYP8B1 1582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 42916230 42916230 + Missense_Mutation SNP A A G novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb DNAH2 146754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7667223 7667223 + Missense_Mutation SNP C C T novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb DYRK3 8444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 206822222 206822222 + Missense_Mutation SNP G G T novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb E2F7 144455 broad.mit.edu;ucsc.edu 37 12 77424037 77424037 + Silent SNP G T T novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb ELAC1 55520 broad.mit.edu;ucsc.edu 37 18 48510776 48510776 + Silent SNP C A A novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb ESPN 83715 broad.mit.edu;hgsc.bcm.edu 37 1 6504722 6504722 + Missense_Mutation SNP A A G novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb FBXL4 26235 hgsc.bcm.edu;ucsc.edu 37 6 99365322 99365322 + Frame_Shift_Del DEL A A - novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb FBXL4 26235 hgsc.bcm.edu;ucsc.edu 37 6 99365325 99365326 + Frame_Shift_Del DEL AC AC - novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 AC AC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb GOLGA6L10 647042 broad.mit.edu 37 15 82635163 82635163 + RNA SNP C G G rs3970729 TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb GRM4 2914 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33996013 33996013 + Missense_Mutation SNP C C T novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb HGC6.3 100128124 hgsc.bcm.edu 37 6 168376925 168376926 + Frame_Shift_Ins INS - - T rs35001101 bycluster;by1000genomes TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb HGC6.3 100128124 hgsc.bcm.edu 37 6 168376967 168376968 + Frame_Shift_Ins INS - - G novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb HGC6.3 100128124 hgsc.bcm.edu 37 6 168376968 168376969 + Frame_Shift_Ins INS - - G novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb IL9R 3581 broad.mit.edu 37 X 155233148 155233148 + Missense_Mutation SNP C A A novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb IMPG2 50939 broad.mit.edu 37 3 101038459 101038459 + Silent SNP C A A novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb IMPG2 50939 broad.mit.edu;ucsc.edu 37 3 101038458 101038458 + Missense_Mutation SNP C A A novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb KANK3 256949 hgsc.bcm.edu 37 19 8389893 8389895 + In_Frame_Del DEL TCC TCC - rs150055032 bycluster;by1000genomes TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 TCC TCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb KCNC1 3746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 17793557 17793557 + Missense_Mutation SNP G G A novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb KIAA1107 23285 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 92643949 92643949 + Missense_Mutation SNP G G C novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb KIAA1429 25962 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 95530150 95530150 + Missense_Mutation SNP G G A novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb LAMC3 10319 broad.mit.edu 37 9 133901946 133901947 + Frame_Shift_Del DEL CT - - novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 CT CT . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb LATS2 26524 hgsc.bcm.edu;ucsc.edu 37 13 21557772 21557773 + Frame_Shift_Ins INS - - T novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb LGI2 55203 hgsc.bcm.edu 37 4 25032135 25032135 + Missense_Mutation SNP C C T rs74901868 bycluster;byfrequency;by1000genomes TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb LOC284232 0 broad.mit.edu 37 13 19419613 19419613 + RNA SNP G C C novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb LOC284232 0 broad.mit.edu 37 13 19419620 19419620 + RNA SNP A T T novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb LOC440563 440563 broad.mit.edu 37 1 13183480 13183480 + Silent SNP A G G novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb MAP3K4 4216 hgsc.bcm.edu 37 6 161519378 161519378 + Missense_Mutation SNP C C T novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb MMS19 64210 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99229886 99229886 + Silent SNP C C T novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb MYCBP2 23077 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 77785318 77785318 + Missense_Mutation SNP A A G novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb ODF1 4956 hgsc.bcm.edu 37 8 103573015 103573015 + Missense_Mutation SNP A A G rs62523271 byfrequency TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb PABPC3 5042 hgsc.bcm.edu 37 13 25671786 25671786 + Missense_Mutation SNP G G A rs113301206 bycluster;byfrequency TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52610695 52610695 + Nonsense_Mutation SNP G G A novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G G A G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb PCDH15 65217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 55755498 55755498 + Missense_Mutation SNP T T C novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb PCDH15 65217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 55755499 55755499 + Missense_Mutation SNP A A T novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb PEX26 55670 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 18566476 18566476 + Missense_Mutation SNP G G C novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb PIP4K2B 8396 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 36935738 36935738 + Silent SNP C C A novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb SCUBE1 80274 broad.mit.edu;hgsc.bcm.edu 37 22 43614319 43614319 + Silent SNP C C T novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb SDR16C5 195814 broad.mit.edu;ucsc.edu 37 8 57214061 57214061 + Missense_Mutation SNP A G G novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb SERPINA4 5267 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 95029883 95029883 + Silent SNP C C T novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47158115 47158115 + Missense_Mutation SNP T T A novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T T A T T Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb SLC12A2 6558 broad.mit.edu;ucsc.edu 37 5 127488499 127488499 + Splice_Site SNP T G G novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb TCHH 7062 broad.mit.edu;ucsc.edu 37 1 152084846 152084846 + Silent SNP G T T novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb TEK 7010 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 27109633 27109633 + Silent SNP C C T novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb TESC 54997 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 117477015 117477015 + Missense_Mutation SNP T T A novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb THSD7B 80731 broad.mit.edu;ucsc.edu 37 2 138421031 138421031 + Missense_Mutation SNP C A A novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb TMEM86A 144110 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 18722527 18722527 + Silent SNP C C T novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb TNKS1BP1 85456 broad.mit.edu 37 11 57088165 57088165 + Frame_Shift_Del DEL G - - novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb TXNIP 10628 broad.mit.edu;hgsc.bcm.edu 37 1 145438828 145438828 + Missense_Mutation SNP C C A novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C C A C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb TYW1 55253 broad.mit.edu;hgsc.bcm.edu 37 7 66532334 66532334 + Silent SNP C C T novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb Unknown 0 broad.mit.edu 37 1 13418 13418 + RNA SNP G A A rs75175547 TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb Unknown 0 broad.mit.edu 37 20 61715967 61715968 + RNA INS - C C novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb Unknown 0 broad.mit.edu 37 9 66454921 66454921 + RNA SNP C T T novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb USP20 10868 hgsc.bcm.edu 37 9 132636883 132636883 + Missense_Mutation SNP G G T novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb USP20 10868 hgsc.bcm.edu;ucsc.edu 37 9 132636882 132636883 + Frame_Shift_Ins INS - - T novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188205 10188205 + Silent SNP T T C novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188208 10188208 + Missense_Mutation SNP G G C novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G G C G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb VWF 7450 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6091108 6091108 + Silent SNP C C T novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb WBP2 23558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73851365 73851365 + Missense_Mutation SNP T T A novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb ZAN 7455 hgsc.bcm.edu 37 7 100371476 100371477 + Frame_Shift_Ins INS - - G novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb ZMYM6 9204 broad.mit.edu 37 1 35453715 35453715 + Missense_Mutation SNP A C C novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb ZNF2 7549 hgsc.bcm.edu 37 2 95847047 95847047 + Silent SNP G G A rs112887855 TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb ZSWIM2 151112 hgsc.bcm.edu 37 2 187692936 187692937 + In_Frame_Ins INS - - GGG novel TCGA-CJ-5684-01A-11D-1534-10 TCGA-CJ-5684-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 24ee4b71-c2e0-44c3-aaeb-3c488cd26ce7 81ad0b3a-02ce-44e3-b84d-fd03c7792bcb