Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCA4 24 broad.mit.edu 37 1 94514511 94514511 + Missense_Mutation SNP A C C novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d ACSM5 54988 broad.mit.edu;hgsc.bcm.edu 37 16 20451155 20451155 + Missense_Mutation SNP T T C novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d ANUBL1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 46121548 46121548 + Missense_Mutation SNP C C T rs149725835 TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d ARHGAP21 57584 broad.mit.edu 37 10 25010766 25010766 + Missense_Mutation SNP C G G novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d ATP6V0A1 535 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40639358 40639358 + Silent SNP C C T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d BPHL 670 hgsc.bcm.edu;ucsc.edu 37 6 3152714 3152714 + RNA SNP T T G novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d C2orf3 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 75893178 75893178 + Missense_Mutation SNP A A G novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d C8orf37 157657 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 96272706 96272706 + Missense_Mutation SNP G G T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d CACNA1C 775 broad.mit.edu 37 12 2794921 2794921 + Missense_Mutation SNP G A A rs71458011 TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d CCNB3 85417 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 50053811 50053811 + Missense_Mutation SNP G G T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d CDH16 1014 broad.mit.edu;ucsc.edu 37 16 66950224 66950224 + Missense_Mutation SNP C T T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d CDON 50937 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 125891274 125891274 + Missense_Mutation SNP T T A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d CELSR2 1952 broad.mit.edu;hgsc.bcm.edu 37 1 109794802 109794802 + Missense_Mutation SNP A A T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d CELSR3 1951 broad.mit.edu;ucsc.edu 37 3 48682160 48682160 + Missense_Mutation SNP G T T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d COL21A1 81578 broad.mit.edu;hgsc.bcm.edu 37 6 55933843 55933843 + Splice_Site SNP C C A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d CSNK1A1L 122011 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 37679100 37679100 + Silent SNP T T C novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d DLG2 1740 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 83544667 83544667 + Missense_Mutation SNP T T A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d DYNC1H1 1778 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 102452696 102452696 + Missense_Mutation SNP G G A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d EDIL3 10085 broad.mit.edu;ucsc.edu 37 5 83402565 83402565 + Nonsense_Mutation SNP C A A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d FAM21A 387680 broad.mit.edu;hgsc.bcm.edu 37 10 51829431 51829431 + Missense_Mutation SNP A A G novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d FBXO43 286151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 101146397 101146398 + Frame_Shift_Ins INS - - T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d FMO5 2330 hgsc.bcm.edu;ucsc.edu 37 1 146656103 146656103 + Frame_Shift_Del DEL A A - novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d GCFC1 0 broad.mit.edu;ucsc.edu 37 21 34142136 34142136 + Missense_Mutation SNP G A A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d GGNBP2 79893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 34935726 34935726 + Silent SNP G G T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d GREB1L 80000 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 19093876 19093876 + Silent SNP C C A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d HDAC7 51564 broad.mit.edu;ucsc.edu 37 12 48185052 48185052 + Missense_Mutation SNP C G G novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d IKZF4 64375 hgsc.bcm.edu;ucsc.edu 37 12 56428493 56428493 + Frame_Shift_Del DEL A A - novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d KLK13 26085 hgsc.bcm.edu;ucsc.edu 37 19 51559915 51559915 + Missense_Mutation SNP C C T rs150383488 TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d LIG4 3981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 108861063 108861063 + Missense_Mutation SNP C C T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d LOXHD1 125336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 44122812 44122812 + Missense_Mutation SNP G G A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d LPPR1 54886 hgsc.bcm.edu;ucsc.edu 37 9 104048510 104048510 + Missense_Mutation SNP G G T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d LXN 56925 broad.mit.edu 37 3 158390257 158390257 + Missense_Mutation SNP G A A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d MACF1 23499 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 39893209 39893209 + Missense_Mutation SNP A A T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d MED12L 116931 broad.mit.edu 37 3 151100523 151100523 + Missense_Mutation SNP G T T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d MEGF10 84466 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 126774247 126774247 + Missense_Mutation SNP T T C novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d MRPS18C 51023 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 84379580 84379580 + Missense_Mutation SNP C C A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d MUC4 4585 broad.mit.edu 37 3 195506597 195506597 + Missense_Mutation SNP G A A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d MUC4 4585 broad.mit.edu 37 3 195511396 195511396 + Missense_Mutation SNP G T T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d NBR1 4077 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41343513 41343513 + Missense_Mutation SNP C C T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d NCOR1 9611 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 15965052 15965052 + Missense_Mutation SNP C C A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d NPR1 4881 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153659728 153659728 + Missense_Mutation SNP C C T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d NTRK3 4916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 88423631 88423631 + Missense_Mutation SNP C C T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d OTOF 9381 broad.mit.edu 37 2 26717855 26717855 + Silent SNP C T T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d PBRM1 55193 broad.mit.edu;ucsc.edu 37 3 52712615 52712615 + Splice_Site SNP T C C novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d PGPEP1L 145814 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 99512702 99512702 + Missense_Mutation SNP C C T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d PHF6 84295 broad.mit.edu;ucsc.edu 37 X 133551239 133551239 + Missense_Mutation SNP G C C novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d PHLDB1 23187 broad.mit.edu;hgsc.bcm.edu 37 11 118484605 118484605 + Missense_Mutation SNP G G T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d PIWIL1 9271 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 130847573 130847573 + Missense_Mutation SNP G G A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d PLEC 5339 broad.mit.edu;ucsc.edu 37 8 144991673 144991673 + Nonsense_Mutation SNP C A A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d PMFBP1 83449 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 72158692 72158692 + Nonsense_Mutation SNP C C A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d POMZP3 22932 broad.mit.edu 37 7 76247559 76247559 + Missense_Mutation SNP G T T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d RAB18 22931 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 27822869 27822869 + Missense_Mutation SNP G G C novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d REG1P 5969 broad.mit.edu 37 2 79363961 79363961 + RNA SNP G A A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d RGS9 8787 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 63154436 63154436 + Missense_Mutation SNP G G T rs115440141 byfrequency;by1000genomes;alternate_allele TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d RPS4Y1 6192 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 Y 2709666 2709666 + Missense_Mutation SNP A A G novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d RQCD1 9125 hgsc.bcm.edu 37 2 219447712 219447712 + Missense_Mutation SNP C C T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d RQCD1 9125 hgsc.bcm.edu;ucsc.edu 37 2 219447710 219447710 + Frame_Shift_Del DEL A A - novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d RTL1 388015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 101350371 101350371 + Nonsense_Mutation SNP C C T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d RUFY4 285180 hgsc.bcm.edu 37 2 218935328 218935328 + RNA SNP C C A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d RYR1 6261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39028524 39028524 + Missense_Mutation SNP G G C novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d SDR16C5 195814 broad.mit.edu;ucsc.edu 37 8 57228627 57228627 + Missense_Mutation SNP C G G novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47144880 47144880 + Missense_Mutation SNP G G A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d SGPL1 8879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 72631655 72631655 + Missense_Mutation SNP T T C novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d SLFN14 342618 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 33884519 33884519 + Missense_Mutation SNP G G A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d STXBP2 6813 broad.mit.edu;ucsc.edu 37 19 7712373 7712373 + Missense_Mutation SNP G A A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d SUV39H2 79723 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 14941677 14941677 + Missense_Mutation SNP A A G novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d SYNE1 23345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 152565703 152565703 + Missense_Mutation SNP T T C novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d TAS2R8 50836 broad.mit.edu 37 12 10959049 10959049 + Missense_Mutation SNP T C C novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d TG 7038 broad.mit.edu;ucsc.edu 37 8 134107431 134107431 + Silent SNP C A A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d TMOD2 29767 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 52098676 52098676 + Nonsense_Mutation SNP C C T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d TP53INP1 94241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 95952145 95952145 + Missense_Mutation SNP G G T novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d TRIM50 135892 broad.mit.edu 37 7 72732707 72732707 + Missense_Mutation SNP T A A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d TTK 7272 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 80744856 80744856 + Missense_Mutation SNP A A C novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d TTN 7273 hgsc.bcm.edu 37 2 179506014 179506016 + In_Frame_Del DEL TTC TTC - novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 TTC TTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d Unknown 0 broad.mit.edu 37 11 123330778 123330779 + RNA DEL GT - - rs10579380 bycluster;by1000genomes TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 GT GT . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d USP29 57663 broad.mit.edu;ucsc.edu 37 19 57642541 57642541 + Missense_Mutation SNP G A A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d VWCE 220001 broad.mit.edu;hgsc.bcm.edu 37 11 61048292 61048292 + Missense_Mutation SNP C C G novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d WFDC1 58189 broad.mit.edu 37 16 84328656 84328656 + Missense_Mutation SNP C A A novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d ZFP14 57677 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36832152 36832152 + Silent SNP T T C novel TCGA-CZ-5461-01A-01D-1501-10 TCGA-CZ-5461-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 79feee74-7b14-48d9-9be7-8d7671c79c83 278cfc27-dcdc-4b5e-a12b-56730002f95d