Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCC2 1244 hgsc.bcm.edu;ucsc.edu 37 10 101567974 101568006 + Frame_Shift_Del DEL CTCCATGCTCCAGGTAGGTCGGCATTCTCACTG CTCCATGCTCCAGGTAGGTCGGCATTCTCACTG - novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 CTCCATGCTCCAGGTAGGTCGGCATTCTCACTG CTCCATGCTCCAGGTAGGTCGGCATTCTCACTG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 AKAP13 11214 broad.mit.edu;ucsc.edu 37 15 86118435 86118435 + Missense_Mutation SNP C T T novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 AKR1B10 57016 broad.mit.edu 37 7 134212620 134212620 + Translation_Start_Site SNP G A A novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 AMPD2 271 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110170727 110170727 + Missense_Mutation SNP C C G novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 ANKRD23 200539 broad.mit.edu 37 2 97505515 97505515 + Silent SNP T C C novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 BAP1 8314 broad.mit.edu;hgsc.bcm.edu 37 3 52441261 52441261 + Missense_Mutation SNP A A C novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 A A A C A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 CASKIN2 57513 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73500959 73500959 + Missense_Mutation SNP C C T novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 CDC25A 993 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 48215854 48215854 + Missense_Mutation SNP G G T novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 CENPM 79019 broad.mit.edu 37 22 42335169 42335169 + Missense_Mutation SNP C A A novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 CEP68 23177 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 65300044 65300044 + Missense_Mutation SNP C C A novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 DCDC5 100506627 broad.mit.edu;hgsc.bcm.edu 37 11 30921891 30921891 + Splice_Site SNP A A G novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 DCST2 127579 broad.mit.edu;ucsc.edu 37 1 155002622 155002622 + Missense_Mutation SNP G A A rs138904334 TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 DNAJC13 23317 hgsc.bcm.edu;ucsc.edu 37 3 132211264 132211275 + In_Frame_Del DEL GATGATAGAGAA GATGATAGAGAA - novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 GATGATAGAGAA GATGATAGAGAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 EIF2B1 1967 broad.mit.edu;hgsc.bcm.edu 37 12 124116921 124116921 + Missense_Mutation SNP G G A novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 EIF2B1 1967 broad.mit.edu;hgsc.bcm.edu 37 12 124116922 124116922 + Missense_Mutation SNP T T A novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 ESPNP 284729 broad.mit.edu 37 1 17017734 17017734 + Missense_Mutation SNP C T T rs12561805 bycluster;byfrequency;byhapmap TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 FLYWCH1 84256 broad.mit.edu;hgsc.bcm.edu 37 16 2983245 2983245 + Missense_Mutation SNP G G A novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 GON4L 54856 broad.mit.edu;hgsc.bcm.edu 37 1 155764938 155764938 + Silent SNP T T C novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 GON4L 54856 broad.mit.edu;hgsc.bcm.edu 37 1 155764940 155764940 + Missense_Mutation SNP C C T novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 HIVEP2 3097 broad.mit.edu 37 6 143093080 143093080 + Silent SNP C T T novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 HLA-C 3107 broad.mit.edu 37 6 31237140 31237140 + Silent SNP A T T novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 HSPG2 3339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 22222714 22222714 + Silent SNP C C T novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 KIAA0513 9764 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 85120766 85120766 + Missense_Mutation SNP G G C novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 KIAA2022 340533 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 73963362 73963362 + Missense_Mutation SNP T T C novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 KRT73 319101 hgsc.bcm.edu;ucsc.edu 37 12 53011976 53011977 + Frame_Shift_Ins INS - - T novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 KRTAP15-1 254950 broad.mit.edu;hgsc.bcm.edu 37 21 31812784 31812784 + Missense_Mutation SNP C C A novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 LOC144438 0 broad.mit.edu 37 12 49082927 49082927 + RNA DEL T - - novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 LRRC55 219527 broad.mit.edu 37 11 56958045 56958045 + RNA DEL G - - rs34507924 TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 MAPKAPK2 9261 hgsc.bcm.edu 37 1 206903392 206903393 + Frame_Shift_Ins INS - - C novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 MED12 9968 broad.mit.edu 37 X 70360569 70360569 + Silent SNP T C C novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 MED15 51586 broad.mit.edu;ucsc.edu 37 22 20929497 20929497 + Missense_Mutation SNP T C C novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 MUC4 4585 broad.mit.edu 37 3 195515059 195515059 + Missense_Mutation SNP G A A rs71321846 TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 MYH14 79784 broad.mit.edu 37 19 50733855 50733855 + Frame_Shift_Del DEL G - - novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 NANOG 79923 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7947298 7947298 + Silent SNP C C T novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 NHSL2 340527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 71358471 71358471 + Missense_Mutation SNP C C T novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 OCA2 4948 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 28267703 28267703 + Missense_Mutation SNP T T G novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 OR10H5 284433 broad.mit.edu 37 19 15905371 15905371 + Missense_Mutation SNP C A A novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 OR2C1 4993 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3406081 3406081 + Silent SNP G G A novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 PCDHA11 56138 broad.mit.edu 37 5 140250599 140250599 + Silent SNP C T T novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 PLXND1 23129 broad.mit.edu;ucsc.edu 37 3 129308262 129308262 + Missense_Mutation SNP C T T novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 POLI 11201 broad.mit.edu;ucsc.edu 37 18 51809261 51809261 + Missense_Mutation SNP G A A novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 PREX1 57580 broad.mit.edu;hgsc.bcm.edu 37 20 47244458 47244458 + Missense_Mutation SNP G G A novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 PSEN2 5664 broad.mit.edu;hgsc.bcm.edu 37 1 227073330 227073330 + Missense_Mutation SNP G G T novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 RIMS1 22999 broad.mit.edu 37 6 72892128 72892128 + Missense_Mutation SNP G T T novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 RRS1 23212 broad.mit.edu 37 8 67341565 67341565 + Missense_Mutation SNP G C C novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 SCNN1B 6338 broad.mit.edu 37 16 23360188 23360188 + Missense_Mutation SNP A G G rs150466803 TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 SEZ6 124925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27286442 27286442 + Missense_Mutation SNP G G A novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 SNAP91 9892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 84302945 84302945 + Missense_Mutation SNP G G A novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 SRPK2 6733 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 104844182 104844182 + Missense_Mutation SNP G G C novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 STAU2 27067 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 74440017 74440017 + Missense_Mutation SNP C C A novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 THRAP3 9967 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36755253 36755253 + Nonsense_Mutation SNP C C T novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 TINAGL1 64129 broad.mit.edu;ucsc.edu 37 1 32050373 32050373 + Missense_Mutation SNP G T T novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 TXNDC6 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 138023808 138023808 + Missense_Mutation SNP G G C novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 Unknown 0 broad.mit.edu 37 12 89405717 89405717 + RNA DEL A - - novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 Unknown 0 broad.mit.edu 37 6 166194842 166194842 + RNA DEL G - - novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 Unknown 0 broad.mit.edu 37 9 68412892 68412892 + RNA SNP G A A novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 VHL 7428 hgsc.bcm.edu 37 3 10183797 10183797 + Missense_Mutation SNP T T A rs5030807 bycluster TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 T T T A T T Unknown Valid Somatic Phase_I WXS PacBio . . Illumina MiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 WNT2 7472 broad.mit.edu;ucsc.edu 37 7 116918296 116918296 + Missense_Mutation SNP G C C novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 ZBBX 79740 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 167000169 167000169 + Missense_Mutation SNP G G A novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23 ZNF649 65251 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52394722 52394722 + Missense_Mutation SNP C C T novel TCGA-CZ-5469-01A-01D-1501-10 TCGA-CZ-5469-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3df654a0-48b0-45ff-bfe1-b5f78f63b30d 774be195-fc56-42e0-ad6f-260df24d5f23