Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
DDI2	84301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	15957021	15957021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	DDI2-44	NM_032341	exon3	c.C470T	p.P157L	GCAATCCACCCCT	.	92	33	138	0	.	5	3	2	0	0
GALE	2582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24124297	24124297	+	Missense_Mutation	SNP	G	G	T	rs141583863	alternate_allele	TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	GALE-90	NM_000403	exon6	c.C416A	p.P139H	TACTGGGGGTTCC	.	57	29	93	0	G|1.000;C|0.000	168	78	90	0	0
NUDC	10726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27250638	27250638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	NUDC-91	NM_006600	exon2	c.A140G	p.E47G	GAGGAGAAGAAGG	.	74	31	71	0	.	278	133	145	0	0
DOCK7	85440	hgsc.bcm.edu;bcgsc.ca	37	1	63119666	63119666	+	Silent	SNP	T	T	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	DOCK7-92	NM_001272002	exon3	c.A309G	p.V103V	TTCAGGTACAGCT	.	56	4	69	0	.	0	0	0	0	0
CTH	1491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	70877247	70877247	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	CTH-91	NM_001190463	exon1	c.G149C	p.G50A	AGCAAGGGGCGCC	.	83	29	98	0	.	35	18	17	0	0
DNTTIP2	30836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94337674	94337674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	.	NM_014597	exon5	c.G2021T	p.R674I	TAAAATCTTTTCG	.	302	135	338	1	.	21	12	9	0	0
SETDB1	9869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150936790	150936790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	SETDB1-228	NM_001145415	exon22	c.G3826A	p.E1276K	GGCAAGGAGCTAC	.	63	16	88	0	.	22	11	11	0	0
SLC27A3	11000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153752431	153752431	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	SLC27A3-91	NM_024330	exon10	c.A2146T	p.T716S	CCCCTCACAACTG	.	40	18	56	0	.	36	15	21	0	0
DDX59	83479	hgsc.bcm.edu;broad.mit.edu	37	1	200635600	200635600	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	DDX59-155	NM_001031725	exon2	c.C269G	p.P90R	TTAACGGGCTCTT	.	45	3	50	0	.	13	13	0	0	0
BTG2	7832	broad.mit.edu	37	1	203274779	203274779	+	Silent	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	BTG2-651	NM_006763	exon1	c.C45T	p.A15A	CGCCGCCGCCGTG	.	12	3	8	0	.	151	78	73	0	0
SIGIRR	59307	broad.mit.edu;bcgsc.ca	37	11	406878	406878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	SIGIRR-90	NM_001135053	exon8	c.C844A	p.L282M	TCACCAGGTGGCG	.	11	5	21	0	.	152	70	82	0	0
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1075662	1075662	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	MUC2-90	NM_002457	exon2	c.C88G	p.R30G	AGAACCCGAAACC	.	38	11	47	0	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1268402	1268402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	.	NM_002458	exon31	c.G10292A	p.S3431N	CCAGCAGCACAGT	.	19	4	16	2	.	0	0	0	0	0
SLC5A12	159963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	26725402	26725402	+	Silent	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	SLC5A12-92	NM_178498	exon5	c.T618C	p.H206H	CCCAGCATGAGTT	.	225	91	287	0	.	4	3	1	0	0
TCP11L1	55346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	33083137	33083137	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	TCP11L1-90	NM_001145541	exon7	c.G837C	p.K279N	TCAGAAGTATAAA	.	55	22	59	0	.	20	7	13	0	0
NDUFS3	4722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47605943	47605943	+	Silent	SNP	G	G	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	NDUFS3-90	NM_004551	exon7	c.G705A	p.L235L	TGACCTGAACAGC	.	205	85	305	0	.	117	71	46	0	0
CCDC67	159989	hgsc.bcm.edu	37	11	93122277	93122277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	CCDC67-91	NM_181645	exon9	c.A1027G	p.K343E	CATGAAAAAGAAT	.	20	2	20	0	.	0	0	0	0	0
CNTN5	53942	hgsc.bcm.edu	37	11	99690467	99690467	+	Missense_Mutation	SNP	A	A	C	rs202073412	alternate_allele	TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	CNTN5-366	NM_001243270	exon3	c.A248C	p.Y83S	ATCTTTATCATTC	.	19	5	26	0	.	0	0	0	0	0
ATP5L	10632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118272388	118272388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ATP5L-90	NM_006476	exon1	c.A8G	p.Q3R	TGGCCCAATTTGT	.	49	20	60	0	.	526	264	262	0	0
TMEM45B	120224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	129724698	129724698	+	Silent	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	TMEM45B-90	NM_138788	exon3	c.A372G	p.A124A	TGTGGCAGTATTC	.	103	39	151	0	.	0	0	0	0	0
IFFO1	25900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6649694	6649694	+	Silent	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	IFFO1-68	NM_001193457	exon10	c.T1671C	p.A557A	GTCCTCAGCCTCG	.	89	83	137	0	.	8	2	6	0	0
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	46285793	46285793	+	Splice_Site	SNP	G	G	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ARID2-100	NM_152641	exon18	c.5062-1G>A	.	CAAAAAGGATAAG	.	59	54	64	0	.	0	0	0	0	0
ESPL1	9700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53685605	53685605	+	Silent	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ESPL1-228	NM_012291	exon26	c.A5652G	p.T1884T	CCTGACAGTACCA	.	140	126	189	0	.	8	0	8	0	0
LHX5	64211	hgsc.bcm.edu	37	12	113909129	113909129	+	Splice_Site	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	LHX5-90	NM_022363	exon2	c.173+2T>C	.	CCTCTTACCTGAA	.	26	2	67	0	.	0	0	0	0	0
ALG5	29880	broad.mit.edu	37	13	37539814	37539814	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ALG5-90	NM_013338	exon8	c.G671A	p.W224X	AGGAACCACACCA	.	83	4	111	0	.	63	63	0	0	0
RAB2B	84932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	21931921	21931921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	RAB2B-228	NM_032846	exon6	c.T368C	p.L123P	GACTCTAGGTCAC	.	85	37	113	0	.	0	0	0	0	0
PCK2	5106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24568928	24568928	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	PCK2-227	NM_001018073	exon6	c.A1014C	p.E338D	CAGTGAAGGTGAG	.	118	29	183	0	.	1	0	1	0	0
C14orf183	196913	hgsc.bcm.edu	37	14	50550535	50550535	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	C14orf183-90	NM_001014830	exon5	c.G809C	p.W270S	GGCACCCACCAGG	.	45	3	70	0	.	0	0	0	0	0
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	52494036	52494036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	NID2-158	NM_007361	exon12	c.G2557A	p.E853K	CATCCTCACAGGG	.	37	15	55	0	.	12	8	4	0	0
PPM1A	5494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	60750192	60750192	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	PPM1A-227	NM_177952	exon2	c.A990T	p.R330S	ATCCAGACTTGAA	.	232	94	329	1	.	74	33	40	0	1
EML5	161436	hgsc.bcm.edu	37	14	89178771	89178771	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	EML5-93	NM_183387	exon10	c.A1501G	p.T501A	CACATGTCCATGA	.	37	2	64	0	.	1	1	0	0	0
UBR1	197131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43299483	43299483	+	Splice_Site	SNP	C	C	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	UBR1-91	NM_174916	exon31	c.3210-1G>T	.	GGGGTGCTACCAA	.	19	8	41	0	.	0	0	0	0	0
PARP6	56965	broad.mit.edu;bcgsc.ca	37	15	72556908	72556908	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	PARP6-522	NM_020214	exon7	c.T383C	p.L128P	AACTGAAGACCCA	.	109	5	119	0	.	0	0	0	0	0
IDH2	3418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90634783	90634783	+	Splice_Site	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	IDH2-15118	NM_002168	exon3	c.207+2T>C	.	GGCACTACCTTCT	.	95	12	127	0	.	7	0	7	0	0
RAB40C	57799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	677608	677608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	RAB40C-227	NM_021168	exon6	c.T832C	p.C278R	AGTAACTGCAAGA	.	104	59	111	0	.	35	14	21	0	0
HS3ST2	9956	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	22926750	22926750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	HS3ST2-516	NM_006043	exon2	c.G971A	p.R324Q	TGCCTCGATGCTT	.	328	17	264	0	.	2	2	0	0	0
PRSS8	5652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31144179	31144179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	.	NM_002773	exon4	c.T362C	p.I121T	TGGGGGATGATGT	.	344	94	248	1	.	12	10	2	0	0
ABCC11	85320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	48249161	48249161	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ABCC11-95	NM_033151	exon7	c.T1046C	p.I349T	AGCTTAATGCAAG	.	139	42	136	0	.	0	0	0	0	0
INPP5K	51763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	1400005	1400005	+	Silent	SNP	G	G	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	INPP5K-68	NM_016532	exon9	c.C1056G	p.T352T	GTCCGAGGTTGAA	.	124	68	135	0	.	55	23	32	0	0
ACLY	47	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40048661	40048661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ACLY-228	NM_001096	exon16	c.G1641T	p.E547D	CAGGATCTCTTTG	.	180	68	112	0	.	201	129	72	0	0
HDAC5	10014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42158172	42158172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	HDAC5-227	NM_001015053	exon21	c.G2689T	p.D897Y	CGTTGTCATAGCG	.	119	44	98	0	.	88	63	25	0	0
AFG3L2	10939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	12358734	12358734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	AFG3L2-90	NM_006796	exon8	c.A961G	p.M321V	ATTCCATGATCTC	.	67	27	74	0	.	183	99	84	0	0
APC2	10297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	1468067	1468067	+	Silent	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	APC2-290	NM_005883	exon15	c.C4767T	p.P1589P	CGAGCCCGAGCCC	.	20	9	20	0	.	0	0	0	0	0
NACC1	112939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	13249116	13249116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	NACC1-90	NM_052876	exon6	c.A1480G	p.S494G	TTCATCAGTGAAA	.	161	62	193	1	.	54	26	28	0	0
SUGP1	57794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19420931	19420931	+	Silent	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	SUGP1-91	NM_172231	exon3	c.G285A	p.K95K	CTGCAACTTCAGA	.	84	36	103	0	.	30	18	12	0	0
IGFLR1	79713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36232080	36232080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	IGFLR1-90	NM_024660	exon2	c.T2C	p.M1T	GGCCCCATCTGGG	.	16	6	41	0	.	2	1	1	0	0
ADCK4	79934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41220537	41220537	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ADCK4-319	NM_001142555	exon2	c.A1G	p.M1V	GCCACATTGCCTG	.	52	20	65	0	.	0	0	0	0	0
PRR12	57479	hgsc.bcm.edu	37	19	50119185	50119185	+	Missense_Mutation	SNP	C	C	G	rs200319638		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	PRR12-70	NM_020719	exon9	c.C5206G	p.R1736G	CTCCTGCGGCCTG	.	7	5	4	1	C|0.999;G|0.001	26	13	13	0	0
ZNF347	84671	hgsc.bcm.edu	37	19	53643807	53643807	+	Silent	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ZNF347-90	NM_001172675	exon5	c.T2277C	p.I759I	AGTATGAATTCCC	.	265	24	226	0	.	1	1	0	0	0
ZNF347	84671	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	53643811	53643811	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ZNF347-90	NM_001172675	exon5	c.G2273C	p.G758A	TGAATTCCCCGAT	.	267	28	226	0	.	3	3	0	0	0
ZNF347	84671	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	53643814	53643814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ZNF347-90	NM_001172675	exon5	c.G2270A	p.R757Q	ATTCCCCGATGTC	.	265	30	229	1	.	8	8	0	0	0
ZNF347	84671	hgsc.bcm.edu	37	19	53644104	53644104	+	Silent	SNP	G	G	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ZNF347-90	NM_001172675	exon5	c.C1980G	p.G660G	GACCTTGCCACAC	.	174	19	195	2	.	6	6	0	0	0
ZNF347	84671	hgsc.bcm.edu	37	19	53644116	53644116	+	Silent	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ZNF347-90	NM_001172675	exon5	c.T1968C	p.C656C	CTCATTACATTTG	.	174	13	191	2	.	13	13	0	0	0
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	109383218	109383218	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	RANBP2-675	NM_006267	exon20	c.A6223C	p.M2075L	ATGCTGATGCGAA	.	566	257	697	0	.	61	43	18	0	0
RIF1	55183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152319615	152319615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	RIF1-300	NM_018151	exon30	c.C3581A	p.S1194Y	AAAATTCTTTCGT	.	108	23	101	1	.	4	4	0	0	0
ZNF804A	91752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	185802128	185802128	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ZNF804A-163	NM_194250	exon4	c.G2005C	p.D669H	TTAAGTGACAATG	.	112	44	126	0	.	0	0	0	0	0
ANKRD44	91526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198001337	198001337	+	Silent	SNP	C	C	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ANKRD44-230	NM_153697	exon4	c.G240T	p.R80R	AACAGCCCGGTGC	.	67	30	86	0	.	1	0	1	0	0
RBM44	375316	hgsc.bcm.edu	37	2	238726834	238726834	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	RBM44-26	NM_001080504	exon3	c.A1275G	p.I425M	GGCAATAGAAGAT	.	39	2	53	0	.	0	0	0	0	0
RBBP9	10741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	18471080	18471080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	RBBP9-227	NM_006606	exon4	c.C293T	p.A98V	GTGTACGCAGACA	.	111	39	135	0	.	54	27	27	0	0
ENTPD6	955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	25201971	25201971	+	Splice_Site	SNP	T	T	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ENTPD6-90	NM_001247	exon11	c.1045+2T>A	.	AGCAGGTACGGGG	.	41	21	52	0	.	0	0	0	0	0
SGK2	10110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	42208647	42208647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	SGK2-990	NM_016276	exon11	c.A1065G	p.I355M	CCCCATAAACTGG	.	107	51	131	0	.	37	22	15	0	0
CDH22	64405	broad.mit.edu	37	20	44806642	44806642	+	Missense_Mutation	SNP	C	C	T	rs144477780		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	CDH22-95	NM_021248	exon11	c.G1858A	p.A620T	GGGAGGCGGCCAT	.	40	5	43	1	C|1.000;T|0.000	0	0	0	0	0
LIMK2	3985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	31655910	31655910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	LIMK2-548	NM_005569	exon5	c.T398C	p.M133T	CACCCATGTTTGA	.	38	32	95	0	.	5	4	1	0	0
BAIAP2L2	80115	hgsc.bcm.edu	37	22	38482355	38482355	+	Missense_Mutation	SNP	C	C	G	rs113792005		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	BAIAP2L2-91	NM_025045	exon12	c.G1361C	p.R454P	GGGGTGCGGGAGC	.	2	2	0	0	.	0	0	0	0	0
TBC1D22A	25771	hgsc.bcm.edu	37	22	47507402	47507402	+	Splice_Site	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	TBC1D22A-91	NM_014346	exon12	c.1330-2A>G	.	TCTTTTAGTCTGA	.	37	2	76	0	.	0	0	0	0	0
DCP1A	55802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	53376261	53376261	+	Silent	SNP	G	G	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	DCP1A-90	NM_018403	exon3	c.C214A	p.R72R	TTAGTCGATTCAC	.	17	11	22	0	.	9	5	4	0	0
MORC1	27136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108703606	108703606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	MORC1-98	NM_014429	exon23	c.G2281A	p.V761I	CTAGAACATCATT	.	33	12	47	0	.	0	0	0	0	0
PLOD2	5352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	145803003	145803003	+	Silent	SNP	A	A	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	PLOD2-92	NM_182943	exon11	c.T1185A	p.V395V	CAAAACAACATCT	.	54	21	83	0	.	48	29	19	0	0
TBL1XR1	79718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	176767825	176767825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	TBL1XR1-187	NM_024665	exon7	c.A662G	p.D221G	GGAACATCTTGCC	.	50	27	54	0	.	29	14	15	0	0
MAP3K13	9175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	185191375	185191375	+	Silent	SNP	G	G	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	MAP3K13-548	NM_004721	exon11	c.G2256A	p.G752G	AGTGGGGAGGAGC	.	185	10	219	0	.	8	8	0	0	0
AHSG	197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	186335047	186335047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	AHSG-90	NM_001622	exon4	c.G481A	p.V161M	AGGGTGGTGCACG	.	120	63	164	0	.	0	0	0	0	0
NELFA	7469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1985129	1985129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	.	NM_005663	exon11	c.G1537A	p.V513M	TGTCCACCAGCAT	.	180	81	255	0	.	37	17	20	0	0
COMMD8	54951	hgsc.bcm.edu;bcgsc.ca	37	4	47462163	47462163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	COMMD8-90	NM_017845	exon2	c.G220A	p.E74K	TTACCTCTTCATC	.	76	36	132	0	.	0	0	0	0	0
AASDH	132949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	57204741	57204741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	AASDH-94	NM_181806	exon15	c.T3124C	p.S1042P	CAGTAGATGCTGC	.	66	29	95	0	.	8	7	1	0	0
TRMT10A	93587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	100470297	100470297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	.	NM_001134666	exon8	c.A968G	p.K323R	TCCTGCTTTTCTT	.	154	83	171	0	.	1	1	0	0	0
TET2	54790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	106156045	106156045	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	TET2-4618	NM_001127208	exon3	c.T946A	p.F316I	TGTTCCTTTCAGA	.	60	36	92	0	.	4	3	1	0	0
LARP1B	55132	hgsc.bcm.edu	37	4	128999004	128999004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	LARP1B-68	NM_032239	exon4	c.A104G	p.K35R	AAGAGAAGGTTGA	.	32	2	40	0	.	28	28	0	0	0
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	1064225	1064225	+	Silent	SNP	C	C	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	SLC12A7-138	NM_006598	exon19	c.G2580C	p.L860L	GGGCAGCAGCATG	.	40	19	32	0	.	147	72	75	0	0
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	72192301	72192301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	TNPO1-228	NM_002270	exon19	c.A2160G	p.I720M	GCCAATATTGGGA	.	60	22	99	0	.	86	47	39	0	0
TCERG1	10915	hgsc.bcm.edu	37	5	145838583	145838583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	TCERG1-92	NM_006706	exon4	c.A575G	p.Q192R	AGGCTCAGGCCCA	.	56	3	83	0	.	9	9	0	0	0
SCGN	10590	hgsc.bcm.edu;broad.mit.edu	37	6	25701512	25701512	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	SCGN-93	NM_006998	exon11	c.A780T	p.K260N	TGGAAAAATTCAG	.	106	9	141	0	.	13	11	2	0	0
TRAF3IP2	10758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	111912700	111912700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	TRAF3IP2-228	NM_147686	exon2	c.C590A	p.T197K	TATCCCGTGTCTA	.	107	12	145	0	.	16	15	1	0	0
POM121	9883	hgsc.bcm.edu;broad.mit.edu	37	7	72416770	72416770	+	Silent	SNP	G	G	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	POM121-226	NM_172020	exon13	c.G2952A	p.K984K	CAAAAAGTAGCCT	.	108	26	106	1	.	142	117	25	0	0
PCLO	27445	bcgsc.ca	37	7	82784463	82784463	+	Silent	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	PCLO-29	NM_014510	exon2	c.G1494A	p.K498K	TGGGGGCTTTGCT	.	357	108	290	9	.	12	8	4	0	0
PDIA4	9601	broad.mit.edu	37	7	148702375	148702375	+	Silent	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	PDIA4-524	NM_004911	exon9	c.G1380A	p.G460G	CACCTCCCCAGCA	.	299	9	289	0	.	322	311	11	0	0
LPL	4023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	19816813	19816813	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	LPL-92	NM_000237	exon7	c.G1061C	p.S354T	CTGAGAGTGAAAC	.	61	26	62	0	.	14	10	4	0	0
PLEKHA2	59339	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	38810172	38810172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	.	NM_021623	exon8	c.C652A	p.R218S	AAACGTCGCTTCT	.	37	8	46	0	.	42	23	19	0	0
NBN	4683	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	90960111	90960111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	NBN-1395	NM_002485	exon12	c.G1855A	p.E619K	CAATTTCATTTTC	.	8	4	20	0	.	0	0	0	0	0
EMC2	9694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	109462083	109462083	+	Silent	SNP	A	A	G	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	.	NM_014673	exon2	c.A72G	p.E24E	GAGAGAAGAAAAC	.	82	36	119	0	.	31	18	13	0	0
AQP7	364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	33385805	33385805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	AQP7-90	NM_001170	exon7	c.C585A	p.N195K	TGCTGGGTTGTTC	.	130	39	198	0	.	64	38	26	0	0
C10orf71	118461	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	50530974	50530974	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	C10orf71-90	NM_001135196	exon3	c.384delG	p.V128fs	.	.	122	44	165	0	.	0	0	0	0	0
HNRNPC	3183	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	21679712	21679713	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	HNRNPC-90	NM_031314	exon8	c.689_690del	p.230_230del	.	.	31	16	22	0	.	0	0	0	0	0
SPPL2C	162540	broad.mit.edu;bcgsc.ca	37	17	43922606	43922611	+	In_Frame_Del	DEL	GGCCAA	GGCCAA	-	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	GGCCAA	GGCCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	.	NM_175882	exon1	c.334_339del	p.112_113del	GCTCAGGGCCAAG	.	94	10	99	0	.	0	0	0	0	0
PLA2G6	8398	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	38536176	38536176	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	PLA2G6-91	NM_003560	exon5	c.610delC	p.L204fs	.	.	37	30	83	0	.	0	0	0	0	0
COMMD8	54951	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	47462160	47462160	+	Splice_Site	DEL	C	C	-	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	COMMD8-90	NM_017845	exon3	c.222+1G>-	.	.	.	72	33	129	0	.	0	0	0	0	0
COMMD8	54951	hgsc.bcm.edu	37	4	47462161	47462163	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	COMMD8-90	NM_017845	exon2	c.220_222del	p.74_74del	.	.	77	21	131	0	.	0	0	0	0	0
CEP135	9662	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	56847415	56847423	+	In_Frame_Del	DEL	TAAGAAAGG	TAAGAAAGG	-	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	TAAGAAAGG	TAAGAAAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	CEP135-94	NM_025009	exon13	c.1649_1657del	p.550_553del	.	.	56	19	103	0	.	0	0	0	0	0
ZDHHC2	51201	broad.mit.edu	37	8	17043867	17043867	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	.	NM_016353	exon3	c.185delT	p.L62fs	ATCTACTTTTTGC	.	17	9	16	0	.	0	0	0	0	0
ATL3	25923	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	63403801	63403802	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ATL3-69	NM_015459	exon9	c.856_857insT	p.A286fs	.	.	110	44	135	0	.	0	0	0	0	0
RP1	6101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	55540098	55540099	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	RP1-102	NM_006269	exon4	c.3656_3657insT	p.S1219fs	.	.	123	58	139	0	.	0	0	0	0	0