Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
RERE	473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	8674682	8674682	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	RERE-515	NM_012102	exon5	c.T460A	p.S154T	GCAGAGAGCATGC	.	183	57	217	0	.	5	5	0	0	0
TNFRSF1B	7133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	12266986	12266986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TNFRSF1B-1085	NM_001066	exon10	c.C1295T	p.S432L	TTCGGTCACAGCT	.	116	34	137	0	.	34	31	3	0	0
AGMAT	79814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	15909721	15909721	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	AGMAT-91	NM_024758	exon2	c.A442T	p.I148F	CTACAATTTTCTC	.	59	24	74	0	.	67	39	28	0	0
SLC5A9	200010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	48713171	48713171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	SLC5A9-93	NM_001135181	exon15	c.C2077T	p.L693F	GCTGTCCTTTTGC	.	131	36	143	0	.	31	17	14	0	0
ZYG11B	79699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	53287171	53287171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ZYG11B-94	NM_024646	exon14	c.A2105G	p.K702R	ACATCAAAGATCA	.	84	18	83	0	.	26	14	12	0	0
USP24	23358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	55612677	55612677	+	Silent	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	USP24-521	NM_015306	exon19	c.T2175C	p.Y725Y	GCCCAGATACAGA	.	54	20	55	0	.	15	9	6	0	0
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62365295	62365295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	INADL-94	NM_176877	exon23	c.C3172T	p.P1058S	GAAACTCCAAATT	.	256	78	263	0	.	92	48	44	0	0
HIST2H2BE	8349	broad.mit.edu	37	1	149858178	149858178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	HIST2H2BE-69	NM_003528	exon1	c.G13A	p.A5T	ATTTTGCCGGTTC	.	80	4	74	0	.	53	53	0	0	0
TCHH	7062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152082279	152082279	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TCHH-72	NM_007113	exon3	c.G3414A	p.R1138R	ATATTGCCTCTCC	.	139	39	175	0	.	0	0	0	0	0
KCNN3	3782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154841688	154841688	+	Silent	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	KCNN3-91	NM_001204087	exon1	c.C753T	p.S251S	GGTGCTGCTGGCG	.	113	41	161	0	.	4	4	0	0	0
EFNA1	1942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155104075	155104075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	EFNA1-90	NM_182685	exon2	c.A353G	p.K118R	TGGGCAAGGAGTT	.	47	10	65	0	.	70	41	29	0	0
PTCHD3	374308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	27687708	27687708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PTCHD3-94	NM_001034842	exon4	c.T1819C	p.F607L	ATATAAAGACTAC	.	95	63	92	0	.	0	0	0	0	0
NCOA4	8031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	51585156	51585156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	NCOA4-1042	NM_001145261	exon9	c.G1303T	p.D435Y	GTGTGTGATGAGA	.	104	69	99	0	.	545	117	428	0	0
SLC29A3	55315	broad.mit.edu	37	10	73111339	73111339	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	SLC29A3-90	NM_018344	exon4	c.T404A	p.V135D	TCCGTGTCCTGGC	.	86	4	120	0	.	15	15	0	0	0
WAPAL	23063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	88259986	88259986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	WAPAL-91	NM_015045	exon3	c.G1014T	p.K338N	CCCTTTCTTTGCC	.	166	117	190	0	.	84	13	71	0	0
PAPSS2	9060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	89503313	89503313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PAPSS2-493	NM_001015880	exon11	c.C1406T	p.A469V	ACGCGGCTGTGCT	.	91	47	108	0	.	74	4	66	0	4
DOCK1	1793	ucsc.edu;bcgsc.ca	37	10	129209146	129209146	+	Silent	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	DOCK1-698	NM_001380	exon43	c.G4323A	p.R1441R	TTCTCGGCCAATC	.	39	4	45	0	.	131	131	0	0	0
OR52K1	390036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4510932	4510932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	OR52K1-68	NM_001005171	exon1	c.C802T	p.R268C	GTAGCCCGCCATG	.	230	66	300	0	.	0	0	0	0	0
USP47	55031	hgsc.bcm.edu;broad.mit.edu	37	11	11942036	11942036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	USP47-660	NM_017944	exon9	c.G1009T	p.D337Y	GTTGAAGATGAGG	.	75	21	39	0	.	0	0	0	0	0
DDB1	1642	broad.mit.edu	37	11	61081866	61081866	+	Silent	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	DDB1-661	NM_001923	exon13	c.C1503T	p.A501A	GCAGGAGGCCACA	.	229	4	229	1	.	267	260	7	0	0
SLC25A45	283130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65144060	65144060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	SLC25A45-68	NM_182556	exon7	c.A685G	p.M229V	TCTGCATCCGGGA	.	121	33	150	0	.	0	0	0	0	0
RELA	5970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65423175	65423175	+	Silent	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	RELA-872	NM_021975	exon10	c.T1017C	p.A339A	GACAGAAGCTGAG	.	67	16	74	0	.	94	56	38	0	0
ANO1	55107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	69951883	69951883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ANO1-47	NM_018043	exon5	c.C736T	p.R246W	AAAACCCGGAGCA	.	47	15	94	0	.	0	0	0	0	0
MAML2	84441	hgsc.bcm.edu	37	11	95825431	95825431	+	Silent	SNP	T	T	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	MAML2-850	NM_032427	exon2	c.A1764G	p.Q588Q	TTGCTGTTGGGTG	.	8	2	12	2	.	44	44	0	0	0
ZC3H12C	85463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	110007683	110007683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ZC3H12C-68	NM_033390	exon2	c.T317C	p.I106T	GTAGCATTTCAGT	.	27	15	33	0	.	1	1	0	0	0
DRD2	1813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113295344	113295344	+	Silent	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	DRD2-92	NM_016574	exon2	c.T30C	p.D10D	ATCATCATCATAC	.	107	27	132	0	.	0	0	0	0	0
PCED1B	91523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	47628909	47628909	+	Silent	SNP	G	G	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	.	NM_138371	exon2	c.G63T	p.L21L	CATCCTGGGGGAC	.	74	24	89	0	.	12	12	0	0	0
TMEM120B	144404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	122190050	122190050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TMEM120B-68	NM_001080825	exon5	c.G382A	p.E128K	AAGGACGAATATG	.	120	40	129	0	.	15	9	6	0	0
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102500785	102500785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	DYNC1H1-98	NM_001376	exon56	c.A10750G	p.N3584D	CGATTCAATAGGT	.	137	39	186	0	.	0	0	0	0	0
CALML4	91860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	68489823	68489823	+	Missense_Mutation	SNP	G	G	A	rs201056051		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	CALML4-90	NM_033429	exon4	c.C448T	p.R150W	TTGACCGCAGGTC	.	136	45	167	0	G|0.999;A|0.000	277	148	129	0	0
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	88679229	88679229	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	NTRK3-3538	NM_001243101	exon9	c.C808G	p.L270V	TCACCAGCGTCAA	.	136	42	164	0	.	2	2	0	0	0
ACAN	176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	89398462	89398462	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ACAN-25	NM_001135	exon12	c.C2646T	p.F882F	TGACTTCAGTGGG	.	74	22	101	0	.	0	0	0	0	0
RHCG	51458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90026327	90026327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	RHCG-226	NM_016321	exon3	c.A493G	p.N165D	ACTCATTCACAGC	.	78	29	67	0	.	0	0	0	0	0
BAIAP3	8938	hgsc.bcm.edu	37	16	1398016	1398016	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	BAIAP3-91	NM_003933	exon32	c.C3252G	p.Y1084X	CTTCTACTTGTGA	.	66	6	115	0	.	0	0	0	0	0
PSMB10	5699	hgsc.bcm.edu	37	16	67970649	67970649	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PSMB10-90	NM_002801	exon1	c.C4G	p.L2V	GCTTCAGCATCTT	.	11	6	2	0	.	144	45	99	0	0
KCNJ18	100134444	broad.mit.edu;bcgsc.ca	37	17	21319584	21319584	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	.	NM_001194958	exon3	c.C930T	p.T310T	GACCACCCAGGCC	.	227	10	259	0	.	3	3	0	0	0
SSH2	85464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27975326	27975326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	SSH2-92	NM_033389	exon13	c.G1182T	p.M394I	CACCCCCATTTTG	.	85	46	60	0	.	45	23	22	0	0
WIPF2	147179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38416825	38416825	+	Silent	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	WIPF2-93	NM_133264	exon3	c.G102A	p.Q34Q	TGAGCAGCGGGGT	.	161	38	158	0	.	59	40	19	0	0
KRTAP1-3	81850	hgsc.bcm.edu	37	17	39191010	39191010	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	.	NM_030966	exon1	c.T64A	p.S22T	AGCTGGAGCCGCA	.	97	9	80	2	.	0	0	0	0	0
CDC27	996	hgsc.bcm.edu	37	17	45249300	45249300	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	CDC27-291	NM_001114091	exon3	c.T234G	p.C78W	AACACAACATTTT	.	69	4	59	0	.	48	48	0	0	0
TLK2	11011	hgsc.bcm.edu	37	17	60650591	60650591	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TLK2-464	NM_006852	exon12	c.A984G	p.I328M	AAGGATAAATTCA	.	36	2	40	0	.	41	41	0	0	0
GAREM	64762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	29867256	29867256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	.	NM_022751	exon4	c.T1304C	p.F435S	TCTGGGAAAAGGT	.	210	69	211	0	.	58	28	30	0	0
MBD1	4152	hgsc.bcm.edu;broad.mit.edu	37	18	47800703	47800703	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	MBD1-228	NM_001204137	exon12	c.G1074A	p.R358R	GTTCTGCCGGCGG	.	57	3	68	0	.	33	33	0	0	0
ZNF516	9658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	74154041	74154041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ZNF516-69	NM_014643	exon3	c.G970A	p.E324K	CCTCCTCCTGGAC	.	87	24	98	0	.	6	3	3	0	0
CD209	30835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7810714	7810714	+	Silent	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	CD209-91	NM_021155	exon4	c.C438T	p.I146I	CTGGTAGATCTCC	.	237	73	367	0	.	4	4	0	0	0
BRD4	23476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15350519	15350519	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	BRD4-767	NM_058243	exon16	c.G3396A	p.E1132E	GGGGGGCTCCGGC	.	69	27	88	0	.	40	22	18	0	0
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40419757	40419757	+	Silent	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	FCGBP-98	NM_003890	exon6	c.T3237C	p.H1079H	CTTGCTATGGCAC	.	162	44	181	0	.	24	24	0	0	0
HRC	3270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49658077	49658077	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	HRC-91	NM_002152	exon1	c.G418C	p.E140Q	TGTCTTCACTCCC	.	113	34	152	0	.	1	1	0	0	0
VN1R2	317701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53762787	53762787	+	Nonsense_Mutation	SNP	C	C	T	rs150108993		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	VN1R2-90	NM_173856	exon1	c.C1159T	p.R387X	AATAGACGATTCT	.	139	35	165	0	C|1.000;T|0.000	0	0	0	0	0
LRPPRC	10128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44139638	44139638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	LRPPRC-93	NM_133259	exon30	c.T3208C	p.Y1070H	TGCTGTAGGTTTC	.	86	33	58	0	.	158	72	86	0	0
MTHFD2	10797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74441208	74441208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	MTHFD2-90	NM_006636	exon8	c.G892A	p.V298I	GTAGGAGTCAGAC	.	244	71	274	0	.	0	0	0	0	0
IL1RL2	8808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	102849533	102849533	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	IL1RL2-92	NM_003854	exon10	c.C1246T	p.Q416X	GAGAGACAATGTG	.	128	38	127	0	.	2	1	1	0	0
IL1RN	3557	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	113885204	113885204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	IL1RN-92	NM_173842	exon1	c.G3A	p.M1I	CAGAATGGAAATC	.	54	12	58	0	.	4	4	0	0	0
KIF5C	3800	hgsc.bcm.edu	37	2	149850958	149850958	+	Silent	SNP	G	G	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	KIF5C-69	NM_004522	exon17	c.G1929C	p.L643L	GTCTCTGACAGAC	.	11	3	13	0	.	0	0	0	0	0
PSMD14	10213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	162227815	162227815	+	Silent	SNP	T	T	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PSMD14-433	NM_005805	exon7	c.T444C	p.I148I	TCCCATTCAGAGT	.	20	4	25	0	.	155	82	73	0	0
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	204039877	204039877	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	NBEAL1-92	NM_001114132	exon41	c.A6244T	p.N2082Y	TATGAAAATTTTG	.	83	27	93	0	.	0	0	0	0	0
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233660917	233660917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	GIGYF2-28	NM_001103147	exon16	c.A1688G	p.Q563R	ATCCTCAGGGAGA	.	136	33	117	0	.	38	19	19	0	0
SLC24A3	57419	hgsc.bcm.edu;ucsc.edu	37	20	19679325	19679325	+	Splice_Site	SNP	G	G	C	rs201062990	alternate_allele	TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	SLC24A3-91	NM_020689	exon15	c.1719+1G>C	.	TCCTACGTAAGTG	.	19	9	14	0	G|0.999;A|0.000	3	0	3	0	0
MOCS3	27304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49576203	49576203	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	MOCS3-93	NM_014484	exon1	c.T824G	p.L275W	GCAGCTTGTTGCT	.	120	63	104	0	.	37	10	27	0	0
NFATC2	4773	broad.mit.edu	37	20	50092014	50092014	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	NFATC2-92	NM_012340	exon4	c.A1516C	p.K506Q	TGTTTTTGGGCTC	.	240	3	213	0	.	3	3	0	0	0
ARVCF	421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	19965495	19965495	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ARVCF-91	NM_001670	exon8	c.G1684C	p.D562H	CAGTGTCCTTCCG	.	58	16	77	0	.	2	0	2	0	0
CCR3	1232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	46307340	46307340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	CCR3-660	NM_178328	exon3	c.A754G	p.S252G	TGCCCCAGTAAAA	.	62	28	101	0	.	0	0	0	0	0
PLXNB1	5364	ucsc.edu	37	3	48447207	48447207	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PLXNB1-293	NM_002673	exon38	c.6229-2A>G	.	TAGTTCTAGGGAA	.	47	1	55	0	.	1	1	0	0	0
GNAI2	2771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50294280	50294280	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	GNAI2-417	NM_002070	exon6	c.A719C	p.E240A	ACGAGGAGATGGT	.	87	35	105	0	.	0	0	0	0	0
KIAA2018	205717	hgsc.bcm.edu	37	3	113376113	113376113	+	Silent	SNP	C	C	T	rs62265537		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	KIAA2018-93	NM_001009899	exon7	c.G4416A	p.Q1472Q	CTGTTGCTGCTGC	.	46	7	42	2	.	9	8	1	0	0
ZXDC	79364	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	126194470	126194470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ZXDC-91	NM_025112	exon1	c.A239G	p.E80G	GGCACTTCCAGCA	.	18	11	40	0	.	0	0	0	0	0
C4orf36	132989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	87809274	87809274	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	C4orf36-90	NM_144645	exon3	c.T220A	p.S74T	ACTTACATTCTGC	.	89	25	101	0	.	0	0	0	0	0
PLK4	10733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	128812805	128812805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PLK4-333	NM_014264	exon9	c.C2007A	p.N669K	TGACAACATCAGT	.	176	59	162	0	.	1	1	0	0	0
FHDC1	85462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	153896859	153896859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	FHDC1-136	NM_033393	exon11	c.G2416A	p.G806S	GGGGATGGCTCCA	.	139	52	151	0	.	6	3	3	0	0
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1074691	1074691	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	SLC12A7-138	NM_006598	exon16	c.A2063C	p.K688T	CAGTTCTTGGTGT	.	100	31	103	0	.	0	0	0	0	0
PCDHA11	56138	hgsc.bcm.edu;bcgsc.ca	37	5	140250097	140250097	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PCDHA11-67	NM_018902	exon1	c.G1409C	p.G470A	CACCAGGCTGCCA	.	239	23	272	1	.	0	0	0	0	0
F12	2161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176831350	176831350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	F12-90	NM_000505	exon9	c.T865C	p.Y289H	CGCAGTACTCCCA	.	36	15	33	0	.	5	1	4	0	0
SKIV2L	6499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31927082	31927082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	SKIV2L-290	NM_006929	exon2	c.C31A	p.P11T	CTACCCCCTCCAG	.	457	133	587	1	.	0	0	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	51930865	51930865	+	Silent	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PKHD1-603	NM_170724	exon12	c.T789C	p.S263S	AAACACAGATAAT	.	53	15	66	0	.	1	1	0	0	0
PARK2	5071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	162864432	162864432	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PARK2-91	NM_004562	exon2	c.G81A	p.K27K	CACCTCCTTGAGC	.	160	47	197	1	.	13	10	3	0	0
FSCN1	6624	hgsc.bcm.edu;broad.mit.edu	37	7	5633277	5633277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	FSCN1-91	NM_003088	exon1	c.G710A	p.S237N	GGCCCAGCGGCAC	.	24	3	25	0	.	65	38	27	0	0
RELN	5649	broad.mit.edu	37	7	103159949	103159949	+	Silent	SNP	T	T	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	RELN-574	NM_173054	exon49	c.A7683G	p.L2561L	GACTAATAATCGA	.	98	5	86	0	.	37	34	3	0	0
DOCK4	9732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	111555869	111555869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	DOCK4-26	NM_014705	exon13	c.C1157T	p.T386I	TTCCTTGTTATGG	.	48	13	35	0	.	8	8	0	0	0
ABP1	26	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150553627	150553627	+	Silent	SNP	G	G	C	rs186258416	alternate_allele	TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ABP1-139	NM_001091	exon2	c.G69C	p.P23P	CTCCCCGGGGACT	.	82	37	69	1	G|0.999;A|0.001	31	2	29	0	0
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	28991695	28991695	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	KIF13B-22	NM_015254	exon22	c.G2646C	p.Q882H	CAGATGCTGTGGC	.	122	45	119	0	.	33	21	12	0	0
RB1CC1	9821	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	53570007	53570007	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	RB1CC1-170	NM_001083617	exon15	c.G2382A	p.L794L	GACATTCAGAGAA	.	166	58	164	0	.	23	11	12	0	0
C8orf46	254778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	67405943	67405943	+	Silent	SNP	T	T	A	rs139160272	byfrequency;alternate_allele	TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	C8orf46-92	NM_152765	exon1	c.T60A	p.I20I	CGTGATTCCTTCC	.	76	22	71	0	T|0.999;C|0.001	0	0	0	0	0
KCNV2	169522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	2718279	2718279	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	KCNV2-515	NM_133497	exon1	c.C540T	p.R180R	GCGCCGCTTCCTG	.	17	6	34	0	.	0	0	0	0	0
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35699405	35699405	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TLN1-609	NM_006289	exon51	c.G6822T	p.K2274N	CACACGCTTTGAA	.	99	32	97	0	.	286	171	114	0	1
OLFML2A	169611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	127572163	127572163	+	Silent	SNP	C	C	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	OLFML2A-68	NM_182487	exon8	c.C1431T	p.Y477Y	CTTCTACTACAAC	.	96	32	114	0	.	2	1	1	0	0
CCBL1	883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131607633	131607633	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	CCBL1-91	NM_001122672	exon2	c.T52A	p.W18R	CTCACCAGGGGTT	.	48	8	88	0	.	0	0	0	0	0
TRAPPC2	6399	hgsc.bcm.edu	37	X	13732606	13732606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TRAPPC2-130	NM_001128835	exon6	c.T445C	p.Y149H	GTTCATAAAATGG	.	13	2	11	0	.	34	34	0	0	0
SUPT20HL1	100130302	broad.mit.edu	37	X	24381695	24381695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	.	NM_001136234	exon1	c.G818A	p.R273K	AAGAAAGAAAAGT	.	97	4	171	0	.	0	0	0	0	0
GLUD2	2747	ucsc.edu	37	X	120182436	120182436	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	GLUD2-131	NM_012084	exon1	c.A898G	p.R300G	GGGTTTAGAGATA	.	210	1	302	0	.	917	4	913	0	0
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	89717645	89717646	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PTEN-17735	NM_000314	exon7	c.670_671del	p.224_224del	.	.	150	84	162	0	.	0	0	0	0	0
ABCC2	1244	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	101606844	101606844	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ABCC2-91	NM_000392	exon30	c.4273delG	p.G1425fs	.	.	150	101	197	0	.	0	0	0	0	0
MMP21	118856	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	127455343	127455343	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	MMP21-228	NM_147191	exon7	c.1598delA	p.K533fs	.	.	119	63	138	0	.	0	0	0	0	0
DENND5A	23258	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	9173965	9173965	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	DENND5A-91	NM_015213	exon13	c.2461delC	p.L821fs	.	.	188	58	169	0	.	0	0	0	0	0
BAIAP3	8938	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	1398015	1398021	+	Frame_Shift_Del	DEL	ACTTGTG	ACTTGTG	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	ACTTGTG	ACTTGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	BAIAP3-91	NM_003933	exon32	c.3251_3254del	p.1084_1085del	.	.	115	43	120	0	.	0	0	0	0	0
ZNF200	7752	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	3274128	3274128	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ZNF200-90	NM_003454	exon5	c.952delC	p.R318fs	.	.	233	109	186	0	.	0	0	0	0	0
ANKZF1	55139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	220099806	220099806	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ANKZF1-92	NM_001042410	exon10	c.1463delC	p.A488fs	.	.	70	20	83	0	.	0	0	0	0	0
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	46655720	46655720	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PKDREJ-156	NM_006071	exon1	c.3500delC	p.P1167fs	.	.	205	50	208	0	.	0	0	0	0	0
CLTB	1212	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	175843340	175843342	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	CLTB-90	NM_001834	exon1	c.23_25del	p.8_9del	.	.	36	15	71	0	.	0	0	0	0	0
CYP21A2	1589	broad.mit.edu;bcgsc.ca	37	6	32007842	32007846	+	Frame_Shift_Del	DEL	CAGCC	CAGCC	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	CAGCC	CAGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	CYP21A2-68	.	.	.	.	GTGGCGCAGCCGA	.	265	33	361	0	.	0	0	0	0	0
AGPAT1	10554	broad.mit.edu	37	6	32139261	32139268	+	Frame_Shift_Del	DEL	GCCACAAA	GCCACAAA	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	GCCACAAA	GCCACAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	AGPAT1-90	NM_006411	exon2	c.6_13del	p.2_5del	CCCCTGGCCACAA	.	22	9	20	0	.	0	0	0	0	0
MPP6	51678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	24727063	24727075	+	Frame_Shift_Del	DEL	GACTTGAAGAAAA	GACTTGAAGAAAA	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	GACTTGAAGAAAA	GACTTGAAGAAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	MPP6-90	NM_016447	exon13	c.1453_1465del	p.485_489del	.	.	142	50	130	0	.	0	0	0	0	0
ZMIZ2	83637	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	44807159	44807159	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ZMIZ2-137	NM_031449	exon19	c.2700delG	p.L900fs	.	.	122	24	118	0	.	0	0	0	0	0
TRAPPC9	83696	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	141449171	141449172	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TRAPPC9-228	NM_031466	exon3	c.1003_1004del	p.335_335del	.	.	160	72	174	0	.	0	0	0	0	0
RLIM	51132	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	73815805	73815805	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	RLIM-228	NM_183353	exon3	c.8delA	p.N3fs	.	.	69	31	87	0	.	0	0	0	0	0
TRAF4	9618	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	27074242	27074243	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TRAF4-660	NM_004295	exon2	c.155_156insC	p.F52fs	.	.	158	82	184	0	.	0	0	0	0	0
COL5A2	1290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	189898818	189898819	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	COL5A2-92	NM_000393	exon54	c.4478_4479insAA	p.I1493fs	.	.	68	15	66	0	.	0	0	0	0	0
MAT2B	27430	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	162940576	162940577	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	MAT2B-91	NM_013283	exon3	c.274_275insA	p.H92fs	.	.	104	37	155	0	.	0	0	0	0	0
PRSS22	64063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2905588	2905589	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PRSS22		exon4	c.G545A	p.S182N	TGGATGCTCCCCC	.	121.0	62.0	113.0	0.0	.	0	0	0	0	0