Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
MYOM3	127294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	24416117	24416117	+	Missense_Mutation	SNP	C	C	G	rs201031583	alternate_allele	TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	MYOM3-93	NM_152372	exon14	c.G1525C	p.A509P	CGCTGGCATGGAC	.	6	3	16	0	.	0	0	0	0	0
L1TD1	54596	hgsc.bcm.edu	37	1	62675665	62675665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	L1TD1-92	NM_001164835	exon5	c.G1219A	p.E407K	GAGGAGGAGGAAG	.	30	2	69	0	.	0	0	0	0	0
RBM15	64783	broad.mit.edu	37	1	110883162	110883162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	RBM15-661	NM_022768	exon1	c.G1135T	p.G379C	TTCTTGGGCAACC	.	43	3	51	0	.	0	0	0	0	0
NBPF9	400818	broad.mit.edu	37	1	144615252	144615252	+	Missense_Mutation	SNP	T	T	A	rs79161030	alternate_allele	TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	.	.	.	.	.	AAGAGATGTTTTC	.	172	6	263	1	A|0.500;G|0.500	0	0	0	0	0
ITGA10	8515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	145532515	145532515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ITGA10-231	NM_003637	exon9	c.G968A	p.R323K	AAATTAGAACTAT	.	170	66	143	0	.	0	0	0	0	0
SEMA6C	10500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151109386	151109386	+	Silent	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SEMA6C-92	NM_001178061	exon11	c.G921A	p.V307V	CAGGTTCACAGGC	.	165	47	184	0	.	0	0	0	0	0
HRNR	388697	hgsc.bcm.edu	37	1	152190382	152190382	+	Missense_Mutation	SNP	A	A	C	rs76749074		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	HRNR-93	NM_001009931	exon3	c.T3723G	p.H1241Q	AGGGGAATGGCCA	.	31	3	30	1	.	0	0	0	0	0
PEAR1	375033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156877993	156877993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PEAR1-71	NM_001080471	exon9	c.C976T	p.R326C	GACGCCCGTTGCT	.	22	11	31	0	.	0	0	0	0	0
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	167096129	167096129	+	Silent	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	DUSP27-71	NM_001080426	exon5	c.A1761G	p.T587T	CCTGACAGCCTAC	.	63	29	68	0	.	0	0	0	0	0
C1orf112	55732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169806133	169806133	+	Silent	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	C1orf112-90	NM_018186	exon17	c.C1605T	p.S535S	TATTTCCTTCCAG	.	65	23	63	0	.	0	0	0	0	0
PPFIA4	8497	hgsc.bcm.edu	37	1	203025587	203025587	+	Silent	SNP	C	C	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PPFIA4-230	NM_015053	exon5	c.C673A	p.R225R	ACGCTGCGGCTAG	.	47	3	51	0	.	0	0	0	0	0
PLEKHA6	22874	hgsc.bcm.edu	37	1	204219693	204219693	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PLEKHA6-654	NM_014935	exon10	c.T1574C	p.L525S	TCGTTTAACTTGT	.	37	2	44	0	.	0	0	0	0	0
SLC18A3	6572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	50819621	50819621	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SLC18A3-92	NM_003055	exon1	c.G835C	p.G279R	CCAGTGGGCACTC	.	126	31	120	0	.	0	0	0	0	0
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70450862	70450862	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TET1-663	NM_030625	exon12	c.T5702G	p.I1901S	CTGGCATTTCACA	.	167	91	118	0	.	0	0	0	0	0
H2AFY2	55506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	71868875	71868875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	H2AFY2-91	NM_018649	exon8	c.C865A	p.Q289K	GAAGAACAGCTTG	.	167	24	92	0	.	0	0	0	0	0
TRIM8	81603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	104415049	104415049	+	Silent	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TRIM8-227	NM_030912	exon3	c.G879A	p.T293T	TAAGACGGAGGAT	.	92	8	74	0	.	0	0	0	0	0
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115372127	115372127	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	NRAP-522	NM_001261463	exon30	c.G3364C	p.A1122P	CCAGGGCGGCCAT	.	157	44	99	0	.	0	0	0	0	0
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	21594920	21594920	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	NELL1-155	NM_006157	exon19	c.A2347T	p.M783L	TGGACGATGGCTG	.	211	75	211	0	.	0	0	0	0	0
IMMP1L	196294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	31482191	31482191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	IMMP1L-90	NM_144981	exon4	c.A176G	p.H59R	TAAAAATGTCGAC	.	36	11	59	0	.	0	0	0	0	0
CCDC73	493860	hgsc.bcm.edu	37	11	32676507	32676507	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CCDC73-91	NM_001008391	exon10	c.T657G	p.D219E	GGCTGCTTTTTTT	.	25	2	42	0	.	0	0	0	0	0
PRR5L	79899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	36472765	36472765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PRR5L-91	NM_024841	exon9	c.C592T	p.H198Y	AGTGTTCACGAGC	.	156	67	145	0	.	0	0	0	0	0
CKAP5	9793	broad.mit.edu	37	11	46804912	46804912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CKAP5-92	NM_001008938	exon18	c.T2161C	p.S721P	CCATTGACACAAC	.	43	3	67	0	.	0	0	0	0	0
GSTP1	2950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67352235	67352235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	GSTP1-91	NM_000852	exon4	c.G224A	p.R75H	TGGGCCGCACCCT	.	125	59	109	1	.	0	0	0	0	0
AAMDC	28971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	77580812	77580812	+	Silent	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	.	NM_024684	exon3	c.G177A	p.E59E	TGTTGAGAAGGGT	.	264	91	338	0	.	0	0	0	0	0
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82877724	82877724	+	Silent	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PCF11-23	NM_015885	exon5	c.A1785G	p.K595K	TGCCAAAAGATGG	.	125	55	142	0	.	0	0	0	0	0
PCF11	51585	hgsc.bcm.edu	37	11	82878487	82878487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PCF11-23	NM_015885	exon7	c.A2032G	p.T678A	GAAATTACACAGG	.	36	2	33	0	.	0	0	0	0	0
PCSK7	9159	hgsc.bcm.edu	37	11	117077797	117077797	+	Silent	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PCSK7-658	NM_004716	exon15	c.C1866T	p.I622I	GTCCCTGATGTCT	.	239	45	248	0	.	0	0	0	0	0
ARHGAP32	9743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	128840894	128840894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ARHGAP32-231	NM_001142685	exon22	c.G4172A	p.R1391Q	GGGACCCGGGCAC	.	61	25	58	0	.	0	0	0	0	0
AKAP3	10566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	4737430	4737430	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	AKAP3-292	NM_006422	exon4	c.A638C	p.K213T	TTGTATTTCAAAT	.	202	121	173	0	.	0	0	0	0	0
GTSF1	121355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	54856511	54856511	+	Splice_Site	SNP	T	T	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	GTSF1-90	NM_144594	exon6	c.245-2A>T	.	GTTGACTGCAAGA	.	168	46	93	0	.	0	0	0	0	0
WIF1	11197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	65460514	65460514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	WIF1-1110	NM_007191	exon6	c.C637A	p.L213I	TACAAAGGGCTTA	.	54	14	44	0	.	0	0	0	0	0
DDX51	317781	hgsc.bcm.edu	37	12	132628412	132628412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	DDX51-227	NM_175066	exon2	c.G347A	p.S116N	TCCTCGCTGCTCC	.	16	2	4	1	.	0	0	0	0	0
PARP4	143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	25029240	25029240	+	Silent	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PARP4-94	NM_006437	exon22	c.A2673G	p.T891T	CAAGAATGTCACA	.	286	104	257	0	.	0	0	0	0	0
CPB2	1361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	46658419	46658419	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CPB2-92	NM_001872	exon3	c.T210G	p.F70L	TACAAAAAAATGG	.	171	74	166	0	.	0	0	0	0	0
AP1G2	8906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24032848	24032848	+	Splice_Site	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	AP1G2-45	NM_003917	exon14	c.1233-1G>A	.	GCAAACCTAGGGG	.	68	46	103	0	.	0	0	0	0	0
TGM1	7051	hgsc.bcm.edu	37	14	24718666	24718666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TGM1-91	NM_000359	exon15	c.C2307A	p.S769R	GTCCAAGCTGGCA	.	57	3	76	0	.	0	0	0	0	0
MIS18BP1	55320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	45711249	45711249	+	Silent	SNP	A	A	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	MIS18BP1-90	NM_018353	exon4	c.T1131G	p.L377L	TTTTTTAAGTCCA	.	47	30	110	0	.	0	0	0	0	0
NEK9	91754	hgsc.bcm.edu	37	14	75593497	75593497	+	Missense_Mutation	SNP	C	C	G	rs78524303		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	NEK9-359	NM_033116	exon1	c.G128C	p.G43A	GCCGCGCCGCCGC	.	2	2	2	0	C|0.979;G|0.021	0	0	0	0	0
AHNAK2	113146	ucsc.edu	37	14	105410343	105410343	+	Silent	SNP	C	C	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	AHNAK2-47	NM_138420	exon7	c.G11445T	p.V3815V	GGCAGACACCCCA	.	263	5	392	0	.	0	0	0	0	0
SERINC4	619189	ucsc.edu;bcgsc.ca	37	15	44090645	44090645	+	Silent	SNP	A	A	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SERINC4-90	NM_001258031	exon4	c.T516A	p.I172I	ATCAGGAATGCAG	.	89	43	98	0	.	0	0	0	0	0
CSPG4	1464	hgsc.bcm.edu	37	15	75985432	75985432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CSPG4-229	NM_001897	exon2	c.G231T	p.Q77H	GTAGAGCTGCAGC	.	35	6	18	0	.	0	0	0	0	0
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	101529603	101529603	+	Silent	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	LRRK1-602	NM_024652	exon6	c.A762G	p.T254T	AAAAACAGTGAGT	.	64	30	59	0	.	0	0	0	0	0
RAB11FIP3	9727	hgsc.bcm.edu	37	16	570232	570232	+	Silent	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	RAB11FIP3-90	NM_014700	exon12	c.C1971T	p.R657R	CAGCCGCGCCCGG	.	11	6	8	0	.	0	0	0	0	0
MYH11	4629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	15880497	15880497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	MYH11-666	NM_001040114	exon5	c.C623A	p.T208K	ATACTTGTGTCTT	.	63	23	64	1	.	0	0	0	0	0
ARL6IP1	23204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	18810023	18810023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ARL6IP1-90	NM_015161	exon2	c.T170C	p.L57P	ACTTACAGAAACA	.	168	63	147	0	.	0	0	0	0	0
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	18882177	18882177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SMG1-1160	NM_015092	exon17	c.C2336T	p.A779V	CTGCATGCCTGCA	.	19	8	18	0	.	0	0	0	0	0
SEPHS2	22928	broad.mit.edu	37	16	30456699	30456699	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SEPHS2-138	.	.	.	.	ATCCCGATGCCCA	.	27	10	26	0	.	0	0	0	0	0
PRSS53	339105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31098021	31098021	+	Silent	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PRSS53-68	NM_001039503	exon4	c.G441A	p.Q147Q	GGCGGGCTGGGGC	.	94	44	78	0	.	0	0	0	0	0
OGFOD1	55239	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	56485680	56485680	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	OGFOD1-69	NM_018233	exon1	c.154+2T>C	.	TCACGGTAACCGG	.	57	21	55	0	.	0	0	0	0	0
DDX19B	11269	hgsc.bcm.edu	37	16	70346536	70346536	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	DDX19B-226	NM_001257172	exon2	c.G97C	p.E33Q	AAGGAAGAGAAAA	.	35	2	55	0	.	0	0	0	0	0
TXNL4B	54957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72120699	72120699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TXNL4B-91	NM_001142318	exon4	c.C287A	p.S96Y	TCTGGAGATCTAG	.	61	26	68	0	.	0	0	0	0	0
HSBP1	3281	hgsc.bcm.edu	37	16	83842931	83842931	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	.	NM_001537	exon3	c.T134C	p.I45T	GTCGCATTGATGA	.	20	2	11	0	.	0	0	0	0	0
SLC2A4	6517	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7189210	7189210	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SLC2A4-90	NM_001042	exon10	c.G1309C	p.G437R	GGCATGGGTTTCC	.	71	24	62	0	.	0	0	0	0	0
POLR2A	5430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7399344	7399344	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	POLR2A-91	NM_000937	exon2	c.C178G	p.P60A	ATGGACCCGAGGC	.	100	36	79	0	.	0	0	0	0	0
GAS2L2	246176	hgsc.bcm.edu;broad.mit.edu	37	17	34077159	34077159	+	Silent	SNP	G	G	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	GAS2L2-227	NM_139285	exon2	c.C564G	p.P188P	GGGGTCGGGCGGG	.	84	26	86	1	.	0	0	0	0	0
TAF15	8148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	34172014	34172014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TAF15-723	NM_139215	exon15	c.G1711T	p.G571C	GACCGAGGTGGCT	.	165	55	168	0	.	0	0	0	0	0
RPRML	388394	hgsc.bcm.edu;broad.mit.edu	37	17	45056017	45056017	+	Silent	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	RPRML-68	NM_203400	exon1	c.G357A	p.L119L	TCAGTACAGCCCC	.	20	8	16	0	.	0	0	0	0	0
LRRC46	90506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45914207	45914207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	LRRC46-91	NM_033413	exon8	c.G687A	p.M229I	GGAGATGCAGCCC	.	132	38	97	0	.	0	0	0	0	0
ACSF2	80221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48549793	48549793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ACSF2-68	NM_025149	exon12	c.G1328A	p.R443Q	AGGCCCGGATCAT	.	53	31	34	0	.	0	0	0	0	0
PITPNC1	26207	hgsc.bcm.edu;broad.mit.edu	37	17	65665781	65665781	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PITPNC1-226	NM_181671	exon7	c.618+2T>C	.	ACAAGGTAAGTGG	.	20	12	10	0	.	0	0	0	0	0
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	76491997	76491997	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	DNAH17-142	NM_173628	exon38	c.G5863C	p.G1955R	CGCGTCCGGCGTA	.	82	20	77	0	.	0	0	0	0	0
GNAL	2774	hgsc.bcm.edu	37	18	11689823	11689823	+	Silent	SNP	G	G	A	rs181443061		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	GNAL-228	NM_182978	exon1	c.G261A	p.E87E	GCGCGAGGCGGCC	.	10	6	5	1	G|0.989;A|0.011	0	0	0	0	0
TJP3	27134	ucsc.edu	37	19	3730391	3730391	+	Silent	SNP	C	C	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TJP3-92	NM_001267561	exon5	c.C327G	p.T109T	CGCCACCAAAGCC	.	11	3	10	0	.	0	0	0	0	0
PNPLA6	10908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7615223	7615223	+	Silent	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PNPLA6-47	NM_001166111	exon17	c.G1881A	p.A627A	TGCGGCGCACACG	.	149	53	113	0	.	0	0	0	0	0
STXBP2	6813	hgsc.bcm.edu	37	19	7712339	7712339	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	STXBP2-91	NM_001272034	exon18	c.G1671C	p.E557D	GTCAGAGATGAGG	.	28	2	28	0	.	0	0	0	0	0
JUNB	3726	hgsc.bcm.edu;broad.mit.edu	37	19	12902787	12902787	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	JUNB-846	NM_002229	exon1	c.T202C	p.Y68H	GGCAGCTACTTTT	.	31	13	15	0	.	0	0	0	0	0
ZNF681	148213	hgsc.bcm.edu	37	19	23927139	23927139	+	Missense_Mutation	SNP	T	T	G	rs76432318	alternate_allele	TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	.	NM_138286	exon4	c.A1213C	p.K405Q	AGGACTTGTTAAA	.	59	3	46	1	.	0	0	0	0	0
LSM14A	26065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	34712486	34712486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	LSM14A-91	NM_001114093	exon9	c.G1211T	p.R404L	CAAACCGTGGCCG	.	63	20	87	0	.	0	0	0	0	0
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38572702	38572702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SIPA1L3-91	NM_015073	exon3	c.T497C	p.L166P	TCCCCCTTCGGCA	.	125	52	105	0	.	0	0	0	0	0
SPTBN4	57731	hgsc.bcm.edu	37	19	41018832	41018832	+	Silent	SNP	A	A	G	rs814533		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SPTBN4-94	NM_020971	exon14	c.A2136G	p.R712R	GCGGCGAGCGTTG	.	6	6	3	0	A|0.806;G|0.194	0	0	0	0	0
FKRP	79147	hgsc.bcm.edu	37	19	47259238	47259238	+	Silent	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	FKRP-91	NM_024301	exon4	c.G531A	p.E177E	GCGAGAGTGGACC	.	9	5	3	1	.	0	0	0	0	0
RUVBL2	10856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49510337	49510337	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	RUVBL2-227	NM_006666	exon5	c.T328C	p.S110P	ATCTTCTCCCTGG	.	116	43	109	1	.	0	0	0	0	0
SYT3	84258	hgsc.bcm.edu	37	19	51133415	51133415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SYT3-155	NM_032298	exon3	c.C688T	p.P230S	GTCGGGGCAGGGC	.	22	2	28	0	.	0	0	0	0	0
MAPRE3	22924	bcgsc.ca	37	2	27248500	27248500	+	Silent	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	MAPRE3-91	NM_012326	exon5	c.C519T	p.G173G	CTCTGGCCGGCTG	.	97	5	114	0	.	0	0	0	0	0
EIF2AK2	5610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	37365711	37365711	+	Silent	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	EIF2AK2-794	NM_001135652	exon5	c.C534T	p.S178S	ACCAGAGGACAGG	.	71	32	75	0	.	0	0	0	0	0
ATOH8	84913	hgsc.bcm.edu	37	2	85981696	85981696	+	Silent	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ATOH8-90	NM_032827	exon1	c.G384T	p.P128P	GCCGCCGCCTCCT	.	2	2	1	0	.	0	0	0	0	0
GPAT2	150763	hgsc.bcm.edu	37	2	96687959	96687959	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	GPAT2-90	NM_207328	exon22	c.T2336A	p.L779Q	TTGTCCAGGCTGG	.	35	2	34	0	.	0	0	0	0	0
CNNM4	26504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	97428127	97428127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CNNM4-154	NM_020184	exon1	c.A1391G	p.E464G	TGGAGGAGTTCAA	.	81	36	82	0	.	0	0	0	0	0
TMEM131	23505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	98413329	98413329	+	Silent	SNP	T	T	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TMEM131-74	NM_015348	exon27	c.A2991T	p.A997A	TAACAATGCTTCC	.	65	23	59	0	.	0	0	0	0	0
RGPD3	653489	broad.mit.edu;bcgsc.ca	37	2	107032393	107032393	+	Silent	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	RGPD3-23	NM_001144013	exon21	c.C4977T	p.L1659L	GGAACTGAGCTTC	.	256	16	262	3	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu	37	2	179460425	179460425	+	Missense_Mutation	SNP	T	T	A	rs201541213		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TTN-636	NM_001267550	exon295	c.A57656T	p.Y19219F	ATGACATAATTGG	.	22	9	14	2	.	0	0	0	0	0
COL6A3	1293	ucsc.edu;bcgsc.ca	37	2	238280361	238280361	+	Silent	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	COL6A3-526	NM_057165	exon8	c.G3681A	p.A1227A	CTCCGACGCCCCC	.	165	52	138	0	.	0	0	0	0	0
ADRA1D	146	hgsc.bcm.edu	37	20	4229281	4229281	+	Silent	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ADRA1D-522	NM_000678	exon1	c.T324C	p.L108L	GGCCATAAGGATG	.	39	2	25	0	.	0	0	0	0	0
MYL9	10398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	35177592	35177592	+	Silent	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	MYL9-90	NM_006097	exon4	c.C459T	p.N153N	AGGCAACTTCAAC	.	69	20	49	0	.	0	0	0	0	0
RRP1	8568	hgsc.bcm.edu	37	21	45209575	45209575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	RRP1-90	NM_003683	exon1	c.A65G	p.Q22R	ATGAGCAGGTGAC	.	8	5	4	1	.	0	0	0	0	0
TPST2	8459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	26937461	26937461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TPST2-90	NM_001008566	exon3	c.C136T	p.R46W	CAGGCCGCATGGC	.	39	5	54	1	.	0	0	0	0	0
RFPL2	10739	hgsc.bcm.edu	37	22	32598365	32598365	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	RFPL2-91	NM_001098527	exon2	c.G74C	p.C25S	TGGCCACACAATA	.	12	2	15	0	.	0	0	0	0	0
CAPN7	23473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	15288921	15288921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CAPN7-91	NM_014296	exon19	c.A2161G	p.I721V	TTCCATATAGAAA	.	116	46	121	0	.	0	0	0	0	0
ARPP21	10777	bcgsc.ca	37	3	35756938	35756938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ARPP21-93	NM_016300	exon12	c.G905T	p.C302F	CAGTTTGCTCCCA	.	68	4	95	0	.	0	0	0	0	0
ACAA1	30	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38168151	38168151	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ACAA1-91	NM_001607	exon8	c.A667C	p.I223L	GCACAATCTCAGC	.	125	54	117	0	.	0	0	0	0	0
TGM4	7047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	44926858	44926858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TGM4-91	NM_003241	exon2	c.G61T	p.A21S	GACAACGCCGTTT	.	44	13	48	0	.	0	0	0	0	0
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47127778	47127778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SETD2-1273	NM_014159	exon11	c.G5304T	p.K1768N	AAAGGACTTCAGG	.	57	22	72	0	.	0	0	0	0	0
CADPS	8618	hgsc.bcm.edu	37	3	62499343	62499343	+	Silent	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CADPS-281	NM_183394	exon17	c.T2620C	p.L874L	AGGCCAAGCAGAA	.	12	2	25	0	.	0	0	0	0	0
ZNF595	152687	bcgsc.ca	37	4	86145	86145	+	RNA	SNP	A	A	G	rs200927625		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	.	.	.	.	.	ATTCATACTGGAG	.	44	6	48	0	.	0	0	0	0	0
TMEM175	84286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	947053	947053	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TMEM175-90	NM_032326	exon8	c.C538G	p.L180V	AGGGCTCTGTACC	.	65	33	52	0	.	0	0	0	0	0
DRD5	1816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	9784197	9784197	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	DRD5-91	NM_000798	exon1	c.A544T	p.R182W	TGGCACAGGGACC	.	84	33	92	0	.	0	0	0	0	0
TMPRSS11F	389208	hgsc.bcm.edu	37	4	68939702	68939702	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TMPRSS11F-91	NM_207407	exon4	c.C308G	p.S103C	CCTACAGAAGAAT	.	23	2	36	0	.	0	0	0	0	0
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	114232517	114232517	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ANK2-583	NM_001148	exon24	c.T2655A	p.N885K	TATGAATTACCTG	.	73	39	95	0	.	0	0	0	0	0
TRPC3	7222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	122825594	122825594	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TRPC3-92	NM_001130698	exon8	c.T2136G	p.D712E	TTTGTGATCATAT	.	52	20	74	0	.	0	0	0	0	0
SPOCK3	50859	hgsc.bcm.edu	37	4	167656109	167656109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SPOCK3-136	NM_016950	exon12	c.A1274G	p.D425G	TCATCATCATCCC	.	33	2	64	0	.	0	0	0	0	0
MARCH6	10299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	10411600	10411600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	MARCH6-501	NM_005885	exon19	c.G1847A	p.G616E	AGGGAGGGCCTGT	.	166	50	79	1	.	0	0	0	0	0
GFM2	84340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	74026107	74026107	+	Silent	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	GFM2-90	NM_032380	exon17	c.C1704A	p.I568I	GTTTAGGATGGTC	.	114	32	69	0	.	0	0	0	0	0
POC5	134359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	74981182	74981182	+	Silent	SNP	G	G	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	POC5-45	NM_001099271	exon10	c.C1257G	p.S419S	TGGTGGGGATGGC	.	199	47	120	0	.	0	0	0	0	0
CHD1	1105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	98195710	98195710	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CHD1-274	NM_001270	exon32	c.A4490G	p.Y1497C	TGCTTATATAATT	.	67	42	62	0	.	0	0	0	0	0
GIN1	54826	hgsc.bcm.edu	37	5	102442521	102442521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	GIN1-92	NM_017676	exon3	c.C232T	p.H78Y	TTTCATGGCATTC	.	44	11	51	0	.	0	0	0	0	0
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140724210	140724210	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PCDHGA3-68	NM_032011	exon1	c.A610T	p.K204X	CGTGAGAAAAAAG	.	136	39	111	0	.	0	0	0	0	0
PCDH1	5097	hgsc.bcm.edu	37	5	141233788	141233788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PCDH1-95	NM_032420	exon5	c.G3533A	p.R1178Q	GTGTTCCGGTCTT	.	39	3	18	0	.	0	0	0	0	0
MAML1	9794	hgsc.bcm.edu	37	5	179160185	179160185	+	Silent	SNP	C	C	T	rs76621265		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	MAML1-848	NM_014757	exon1	c.C72T	p.R24R	CCTTCGCCGGCGC	.	8	7	3	0	C|0.982;T|0.018	0	0	0	0	0
SLC22A7	10864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43266249	43266249	+	Silent	SNP	G	G	A	rs140596352	alternate_allele	TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SLC22A7-90	NM_006672	exon1	c.G153A	p.L51L	TGCCCTGCCGGGT	.	89	35	116	0	G|1.000;T|0.000	0	0	0	0	0
LRRC1	55227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	53660212	53660212	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	LRRC1-91	NM_018214	exon1	c.A158T	p.E53V	TGCCCGAGGTAAG	.	31	9	26	0	.	0	0	0	0	0
CD109	135228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	74407130	74407130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CD109-155	NM_133493	exon2	c.T82C	p.F28L	CCTCGGTTTCTGG	.	118	49	113	0	.	0	0	0	0	0
PHIP	55023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	79724879	79724879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PHIP-579	NM_017934	exon15	c.C1444T	p.L482F	AAAAGAGAACTCT	.	82	10	93	0	.	0	0	0	0	0
DNAH11	8701	broad.mit.edu;bcgsc.ca	37	7	21908512	21908512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	DNAH11-146	.	.	.	.	ACTCTGGAAAATT	.	121	11	118	0	.	0	0	0	0	0
GPNMB	10457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	23306207	23306207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	GPNMB-580	NM_001005340	exon7	c.C1126A	p.H376N	TATGGCCACTTTC	.	52	19	52	0	.	0	0	0	0	0
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	42063171	42063171	+	Missense_Mutation	SNP	C	C	T	rs35488756	byfrequency;alternate_allele	TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	GLI3-1149	NM_000168	exon10	c.G1393A	p.G465R	TGTCCCCTTCCTC	.	102	41	103	0	C|0.997;G|0.003	0	0	0	0	0
PILRA	29992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99971777	99971777	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PILRA-91	NM_013439	exon2	c.T175G	p.W59G	TACCCCTGGGAGT	.	101	9	76	1	.	0	0	0	0	0
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	121651018	121651018	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PTPRZ1-699	NM_001206838	exon12	c.G1918C	p.E640Q	GGTTCAGAAGAAT	.	105	45	113	0	.	0	0	0	0	0
PPP1R42	286187	hgsc.bcm.edu	37	8	67900719	67900719	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	.	NM_001013626	exon6	c.C586G	p.L196V	TCCACAGCTTCAT	.	32	2	46	0	.	0	0	0	0	0
DENND3	22898	hgsc.bcm.edu	37	8	142146788	142146788	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	DENND3-91	NM_014957	exon2	c.C43G	p.Q15E	CCAGAGCAGTGGA	.	30	2	26	0	.	0	0	0	0	0
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144942527	144942527	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	EPPK1-25	NM_031308	exon1	c.G4895C	p.G1632A	AACATTCCTGCTT	.	128	42	104	0	.	0	0	0	0	0
CNTRL	11064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	123900898	123900898	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CNTRL-661	NM_007018	exon14	c.T2278G	p.F760V	GCCCAGTTCTCAG	.	101	42	93	0	.	0	0	0	0	0
DNM1	1759	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130985083	130985083	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	DNM1-228	.	.	.	.	GTTTGATGAGAAG	.	115	43	86	0	.	0	0	0	0	0
ADAMTS13	11093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	136305499	136305499	+	Silent	SNP	G	G	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ADAMTS13-229	NM_139027	exon16	c.G1821T	p.G607G	GGCTGGGAAGATG	.	103	32	107	0	.	0	0	0	0	0
NOTCH1	4851	hgsc.bcm.edu	37	9	139391440	139391440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	NOTCH1-5459	NM_017617	exon34	c.G6751A	p.A2251T	GCTTGGCCGCCAC	.	35	2	34	0	.	0	0	0	0	0
UBA1	7317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	47069022	47069022	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	UBA1-227	NM_153280	exon17	c.T1939G	p.W647G	CTGCAGTGGGCTC	.	32	26	21	0	.	0	0	0	0	0
FAAH2	158584	hgsc.bcm.edu	37	X	57313330	57313330	+	Silent	SNP	A	A	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	FAAH2-133	NM_174912	exon1	c.A72G	p.V24V	CTTAGTAGGCCGA	.	17	2	18	0	.	0	0	0	0	0
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153037078	153037078	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PLXNB3-130	NM_001163257	exon15	c.G2554C	p.E852Q	GCTGTGGAGCTGC	.	12	12	14	0	.	0	0	0	0	0
PLXNB3	5365	hgsc.bcm.edu	37	X	153037467	153037467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PLXNB3-130	NM_001163257	exon16	c.C2735T	p.A912V	CGTCGGCCCGGTG	.	46	3	48	0	.	0	0	0	0	0
ATP1B1	481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	169100749	169100768	+	Frame_Shift_Del	DEL	CGTTTTCAGGGACGTTTTGA	CGTTTTCAGGGACGTTTTGA	-	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	CGTTTTCAGGGACGTTTTGA	CGTTTTCAGGGACGTTTTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ATP1B1-540	NM_001677	exon6	c.868_887del	p.290_296del	.	.	79	26	113	0	.	0	0	0	0	0
FAM208B	54906	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	5790239	5790239	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	.	NM_017782	exon15	c.4855delT	p.F1619fs	.	.	133	29	91	0	.	0	0	0	0	0
UEVLD	55293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18568448	18568448	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	UEVLD-226	NM_001040697	exon8	c.865delC	p.L289fs	.	.	98	35	125	0	.	0	0	0	0	0
NF2	4771	broad.mit.edu	37	22	30069467	30069470	+	Frame_Shift_Del	DEL	AGAG	AGAG	-	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	AGAG	AGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	NF2-4696	NM_000268	exon12	c.1332_1335del	p.444_445del	GGAGTCAGAGAGG	.	8	5	15	0	.	0	0	0	0	0
CENPH	64946	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	68505552	68505552	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CENPH-153	NM_022909	exon9	c.670delA	p.K224fs	.	.	57	31	57	0	.	0	0	0	0	0
SLC26A8	116369	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	35923086	35923086	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SLC26A8-92	NM_052961	exon17	c.2075delA	p.N692fs	.	.	108	45	122	0	.	0	0	0	0	0
UFL1	23376	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	96996102	96996102	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	.	NM_015323	exon13	c.1465delC	p.H489fs	.	.	35	17	45	0	.	0	0	0	0	0
CLIP2	7461	broad.mit.edu	37	7	73790237	73790239	+	In_Frame_Del	DEL	GTC	GTC	-	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	GTC	GTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CLIP2-93	NM_003388	exon10	c.1506_1508del	p.502_503del	CGAGAAGTCGCGC	.	14	5	18	0	.	0	0	0	0	0
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	123211859	123211862	+	Frame_Shift_Del	DEL	AGAT	AGAT	-	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	AGAT	AGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	STAG2-134	NM_001042749	exon27	c.2726_2729del	p.909_910del	.	.	58	45	69	0	.	0	0	0	0	0
LGR4	55366	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	27412675	27412676	+	In_Frame_Ins	INS	-	-	AAG	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	LGR4-91	NM_018490	exon4	c.367_368insCTT	p.E123delinsLE	.	.	82	21	85	0	.	0	0	0	0	0
AP1G1	164	broad.mit.edu	37	16	71768532	71768533	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	AP1G1-92	NM_001030007	exon23	c.2356_2357insT	p.K786_V787delinsX	GAACTTTAATGAC	.	477	7	465	0	.	0	0	0	0	0
OTOF	9381	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	26693573	26693574	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	OTOF-135	NM_194248	exon32	c.3911_3912insG	p.E1304fs	.	.	84	14	76	0	.	0	0	0	0	0
GALNT5	11227	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	158115698	158115699	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	GALNT5-290	NM_014568	exon1	c.1104_1105insT	p.S368fs	.	.	147	49	186	0	.	0	0	0	0	0
TGIF2	60436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	35219568	35219569	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TGIF2-92	NM_021809	exon3	c.448_449insA	p.E150fs	.	.	104	42	101	0	.	0	0	0	0	0
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	175898831	175898832	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ADAM29-729	NM_001130703	exon4	c.2155_2156insA	p.E719fs	.	.	73	46	101	0	.	0	0	0	0	0
MSH3	4437	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	80160742	80160743	+	Frame_Shift_Ins	INS	-	-	GAAA	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	MSH3-661	NM_002439	exon22	c.3111_3112insGAAA	p.D1037fs	.	.	171	38	143	0	.	0	0	0	0	0
TNRC18	84629	broad.mit.edu	37	7	5396802	5396803	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TNRC18-46	NM_001080495	exon16	c.4939_4940insC	p.K1647fs	AAAACTTGAAGGG	.	13	6	15	0	.	0	0	0	0	0
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	71039066	71039067	+	Frame_Shift_Ins	INS	-	-	AAAC	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	NCOA2-639	NM_006540	exon19	c.3898_3899insGTTT	p.P1300fs	.	.	50	11	43	0	.	0	0	0	0	0
MRPL1	65008	hgsc.bcm.edu	37	4	78804410	78804411	+	Missense_Mutation	DNP	CA	CA	AC	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	MRPL1		exon3	c.A159C	p.T53N	GAAAACAAAAAAA	.	24.0	2.0	29.0	0.0	.	0	0	0	0	0
.	0	bcgsc.ca	37	17	39258290	39258291	+	Missense_Mutation	DNP	AC	AC	TT	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	.	.	.	.	p.C58S	GCAGCACACGGAA	.	75	24	82	0	.	0	0	0	0	0