Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
HES4	57801	hgsc.bcm.edu	37	1	934488	934488	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	HES4-226	NM_001142467	exon3	c.G695C	p.R232T	CCCGCCCTGGGGG	.	2	2	5	1	.	0	0	0	0	0
PEX14	5195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	10678475	10678475	+	Splice_Site	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	PEX14-90	NM_004565	exon5	c.384+1G>A	.	TACAAGGTGAGTC	.	36	16	50	0	.	0	0	0	0	0
CROCC	9696	hgsc.bcm.edu	37	1	17263238	17263238	+	Missense_Mutation	SNP	G	G	C	rs202121748		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	CROCC-137	NM_014675	exon9	c.G1063C	p.A355P	GCCGAGGCAGCCC	.	31	2	31	1	.	3	3	0	0	0
AGO4	192670	hgsc.bcm.edu;broad.mit.edu	37	1	36316582	36316582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	.	NM_017629	exon17	c.C2405A	p.P802Q	CTATTCCAGCCCC	.	48	3	45	0	.	0	0	0	0	0
ZCCHC11	23318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	52961169	52961169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ZCCHC11-93	NM_001009881	exon6	c.A1196G	p.Y399C	GAGCCATACAACC	.	65	28	75	0	.	7	2	5	0	0
LEPR	3953	hgsc.bcm.edu	37	1	66087101	66087101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	LEPR-91	NM_001003680	exon18	c.T2557C	p.S853P	TCCTCTTCCATCT	.	38	2	51	0	.	4	4	0	0	0
ABCA4	24	hgsc.bcm.edu	37	1	94485270	94485270	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ABCA4-162	NM_000350	exon36	c.C5064G	p.F1688L	CATGGAGAAAATC	.	27	2	24	0	.	0	0	0	0	0
GPR161	23432	hgsc.bcm.edu	37	1	168066462	168066462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	GPR161-90	NM_001267609	exon4	c.C443T	p.A148V	AGGACAGCATAGT	.	59	3	72	0	.	0	0	0	0	0
GALNT2	2590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	230372159	230372159	+	Silent	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	GALNT2-92	NM_004481	exon5	c.C534T	p.S178S	CTACAGCAATGAT	.	67	21	73	1	.	0	0	0	0	0
TMEM72	643236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	45429133	45429133	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	TMEM72-90	NM_001123376	exon4	c.G258C	p.W86C	CCACTGGCTGGGC	.	53	25	54	0	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1275533	1275533	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	.	NM_002458	exon34	c.G15429C	p.M5143I	GTCCATGGATATC	.	53	21	47	0	.	0	0	0	0	0
LGALS12	85329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	63273900	63273900	+	Silent	SNP	G	G	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	LGALS12-92	NM_001142535	exon1	c.G36C	p.T12T	TGGAACGAGGATC	.	86	5	103	0	.	0	0	0	0	0
CATSPER1	117144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65788966	65788966	+	Splice_Site	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	CATSPER1-92	NM_053054	exon5	c.1691+1G>A	.	CACTGACCTGAGC	.	29	16	56	0	.	0	0	0	0	0
C11orf52	91894	hgsc.bcm.edu	37	11	111796415	111796415	+	Missense_Mutation	SNP	C	C	G	rs202170534		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	C11orf52-91	NM_080659	exon3	c.C109G	p.Q37E	CCACAACAGCTGC	.	40	2	38	0	C|0.999;G|0.000	25	25	0	0	0
BCL9L	283149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118771983	118771983	+	Silent	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	BCL9L-229	NM_182557	exon6	c.G2469A	p.Q823Q	GCTGTTCTGGGCC	.	92	38	78	0	.	12	4	8	0	0
CBL	867	bcgsc.ca	37	11	119156157	119156157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	CBL-4020	NM_005188	exon11	c.C1822T	p.P608S	AGTGATCCCTGGA	.	68	4	91	0	.	3	3	0	0	0
ARHGEF12	23365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	120352127	120352127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ARHGEF12-661	NM_015313	exon39	c.G4396T	p.A1466S	GATGGGGCAATTT	.	83	28	94	0	.	28	16	11	0	1
LARP4	113251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	50847454	50847454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	LARP4-91	NM_001170808	exon9	c.T1016C	p.L339P	CACCACTGGTAAG	.	123	59	126	0	.	0	0	0	0	0
GRASP	160622	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	52401016	52401016	+	Silent	SNP	C	C	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	GRASP-91	NM_181711	exon1	c.C213A	p.L71L	CGCGCTCGCCGTG	.	25	14	22	0	.	0	0	0	0	0
YY1	7528	bcgsc.ca	37	14	100705945	100705945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	YY1-226	NM_003403	exon1	c.C364T	p.R122C	GGGCTGCGCGCCG	.	104	6	122	0	.	8	8	0	0	0
TYRO3	7301	hgsc.bcm.edu	37	15	41864763	41864763	+	Splice_Site	SNP	G	G	A	rs200965082		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	TYRO3-1388	NM_006293	exon15	c.1875+1G>A	.	CCCTTTGTGAGTA	.	55	4	73	2	G|0.999;T|0.001	0	0	0	0	0
MAPK6	5597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	52338881	52338881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	MAPK6-1403	NM_002748	exon2	c.A224G	p.D75G	ACCATGATAACAT	.	119	45	132	0	.	9	7	2	0	0
SLTM	79811	hgsc.bcm.edu	37	15	59186365	59186365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SLTM-91	NM_024755	exon11	c.A1405G	p.M469V	TCTTCATTTCTTT	.	15	2	15	0	.	19	19	0	0	0
RAB11FIP3	9727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	568988	568988	+	Silent	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	RAB11FIP3-90	NM_014700	exon10	c.G1686A	p.T562T	CTGCACGCCCTGT	.	129	34	130	0	.	68	48	20	0	0
MRPS34	65993	hgsc.bcm.edu	37	16	1822947	1822947	+	Silent	SNP	C	C	G	rs1076695		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	MRPS34-92	NM_023936	exon1	c.G174C	p.V58V	GCGGCGCACGTCG	.	4	2	1	1	C|0.923;G|0.077	7	2	5	0	0
PPP4C	5531	hgsc.bcm.edu	37	16	30087732	30087732	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	PPP4C-226	NM_002720	exon2	c.G34C	p.E12Q	CAGATCGAGCAGC	.	27	2	38	0	.	77	75	2	0	0
ALOX15	246	hgsc.bcm.edu	37	17	4542864	4542864	+	Silent	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ALOX15-229	NM_001140	exon2	c.C198T	p.R66R	CCGTTTGCGCAGT	.	69	5	47	2	.	0	0	0	0	0
ULK2	9706	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	19770705	19770705	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ULK2-334	NM_001142610	exon1	c.A26T	p.Y9F	TTGCTGTACTCGA	.	51	29	22	0	.	0	0	0	0	0
FAM222B	55731	ucsc.edu	37	17	27086705	27086705	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	.	NM_018182	exon4	c.A272C	p.Y91S	GTCGGGTAGGGGC	.	44	5	21	3	.	14	14	0	0	0
EVI2A	2123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	29645740	29645740	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	EVI2A-136	NM_001003927	exon3	c.T361A	p.S121T	CGACAGAAGGTAT	.	196	116	122	0	.	1	1	0	0	0
HNF1B	6928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	36099582	36099582	+	Silent	SNP	T	T	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	HNF1B-71	NM_001165923	exon2	c.A393G	p.Q131Q	GTTGTGTTGCTGC	.	68	42	46	0	.	88	26	62	0	0
KRT26	353288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38926071	38926071	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	KRT26-90	NM_181539	exon5	c.G904T	p.E302X	TCAGCTCATTTCT	.	214	68	147	0	.	0	0	0	0	0
NARF	26502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80443514	80443514	+	Silent	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	NARF-226	NM_012336	exon10	c.C1113T	p.V371V	GGAGGTCCTCGCC	.	123	86	85	0	.	60	26	34	0	0
MEP1B	4225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	29788204	29788204	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	MEP1B-92	NM_005925	exon9	c.A889T	p.S297C	CCAGAGAGTGATC	.	83	36	69	0	.	0	0	0	0	0
PQLC1	80148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	77679262	77679262	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	PQLC1-154	NM_025078	exon5	c.T530A	p.L177Q	ACAGCCAGGAAGC	.	50	18	58	0	.	17	12	5	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1046944	1046944	+	Missense_Mutation	SNP	C	C	G	rs144979723	byfrequency;alternate_allele	TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ABCA7-98	NM_019112	exon14	c.C1766G	p.A589G	GCCGCGCGGTGCT	.	10	3	8	1	C|0.999;T|0.001	3	2	1	0	0
TMPRSS9	360200	hgsc.bcm.edu	37	19	2416797	2416797	+	Silent	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	TMPRSS9-91	NM_182973	exon11	c.G1905A	p.Q635Q	TACGCAGGAAGGA	.	39	2	44	1	.	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9077786	9077786	+	Silent	SNP	G	G	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	MUC16-566	NM_024690	exon3	c.C9660A	p.I3220I	GGACCTGATCTCT	.	157	71	162	0	.	0	0	0	0	0
ANGPTL6	83854	broad.mit.edu	37	19	10206815	10206815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ANGPTL6-90	NM_031917	exon2	c.G425A	p.R142H	AGCACGCGCTCCC	.	8	3	14	0	.	0	0	0	0	0
MAST3	23031	hgsc.bcm.edu	37	19	18257754	18257754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	MAST3-502	NM_015016	exon25	c.G3139A	p.A1047T	GGCCCCGCCCGGA	.	4	3	6	2	.	1	1	0	0	0
MAU2	23383	hgsc.bcm.edu	37	19	19431719	19431719	+	Silent	SNP	G	G	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	MAU2-91	NM_015329	exon1	c.G51C	p.A17A	GGCTGCGCAGGCC	.	6	5	5	1	.	8	2	6	0	0
LMTK3	114783	hgsc.bcm.edu;broad.mit.edu	37	19	49000760	49000760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	LMTK3-1357	NM_001080434	exon12	c.C3653T	p.T1218M	AGTGCCGTGTCTC	.	36	3	46	0	.	4	4	0	0	0
LENG9	94059	hgsc.bcm.edu	37	19	54974538	54974538	+	Missense_Mutation	SNP	C	C	T	rs202206879		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	LENG9-68	NM_198988	exon1	c.G238A	p.G80R	TGGCCCCGGCCTC	.	5	4	4	0	.	0	0	0	0	0
SRBD1	55133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	45616665	45616665	+	Silent	SNP	G	G	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SRBD1-90	NM_018079	exon21	c.C2772G	p.G924G	AACTTTGCCTGTA	.	65	17	71	0	.	7	6	1	0	0
ZNF514	84874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	95815137	95815137	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ZNF514-90	NM_032788	exon5	c.T1093G	p.F365V	TGTGAAATCTGTA	.	74	33	78	0	.	21	11	10	0	0
SF3B1	23451	hgsc.bcm.edu	37	2	198266726	198266726	+	Missense_Mutation	SNP	G	G	T	rs78164940		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SF3B1-140	NM_012433	exon15	c.C2206A	p.R736S	GTTGGCGGATACC	.	64	4	59	0	.	85	85	0	0	0
UGT1A3	54659	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	234638329	234638329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	UGT1A3-24	NM_019093	exon1	c.A557G	p.Q186R	GCACACAGTGTCC	.	254	122	234	0	.	0	0	0	0	0
SCLY	51540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	238990470	238990470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SCLY-92	NM_016510	exon5	c.T629C	p.I210T	CTGGCATTGTCAT	.	50	19	62	0	.	1	0	1	0	0
FRG1B	284802	bcgsc.ca	37	20	29628225	29628225	+	RNA	SNP	A	A	G	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	FRG1B-22	NR_003579	exon5	c.529-2A>G	.	TCACTTAGGGGAA	.	280	17	226	5	.	1	1	0	0	0
SNTA1	6640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	32026771	32026771	+	Silent	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SNTA1-91	NM_003098	exon2	c.C372T	p.D124D	TGTCTGGTCAGCT	.	235	74	178	1	.	1	0	1	0	0
RALGAPB	57148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	37153507	37153507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	RALGAPB-92	NM_020336	exon11	c.C1706A	p.P569H	CTCCTCCTTTGTT	.	247	151	171	0	.	8	4	4	0	0
SULF2	55959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	46291842	46291842	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SULF2-293	NM_001161841	exon17	c.A2342T	p.Y781F	TCAAAGTACTCTA	.	98	51	89	0	.	195	68	127	0	0
DDX27	55661	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	47835928	47835928	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	DDX27-537	NM_017895	exon1	c.A36C	p.E12D	CTGCGAAAAGTTA	.	49	14	39	0	.	1	1	0	0	0
CRYAA	1409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	44589374	44589374	+	Silent	SNP	C	C	G	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	CRYAA-289	NM_000394	exon1	c.C165G	p.T55T	CCGCACCGTGCTG	.	183	92	174	0	.	0	0	0	0	0
DIP2A	23181	hgsc.bcm.edu	37	21	47958481	47958481	+	Silent	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	DIP2A-24	NM_206891	exon16	c.G1887A	p.L629L	CTCACTGCGCATG	.	10	6	5	1	.	10	2	8	0	0
MED15	51586	hgsc.bcm.edu	37	22	20920816	20920816	+	Silent	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	MED15-211	NM_015889	exon7	c.G753A	p.Q251Q	GCAACAGCAGCAG	.	46	5	56	2	.	23	23	0	0	0
UQCR10	29796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30163434	30163434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	UQCR10-23	NM_001003684	exon1	c.G47A	p.R16H	TGTTCCGCAGGAC	.	60	29	58	0	.	175	96	79	0	0
SEC14L3	266629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30866522	30866522	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SEC14L3-95	NM_174975	exon2	c.T102A	p.D34E	ATAATCATCAGGG	.	63	31	61	0	.	0	0	0	0	0
SUN2	25777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	39138452	39138452	+	Silent	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SUN2-154	NM_001199579	exon9	c.C985T	p.L329L	GCTCCAGACGTTC	.	43	19	53	0	.	23	16	7	0	0
ANKRD28	23243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	15751227	15751227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ANKRD28-135	NM_015199	exon13	c.A1264G	p.N422D	GAAGGTTTAGGCA	.	15	9	11	0	.	4	0	4	0	0
SACM1L	22908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	45780273	45780273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SACM1L-91	NM_014016	exon18	c.G1477A	p.D493N	TTCTAGGATTCCA	.	55	31	47	0	.	0	0	0	0	0
PDZRN3	23024	hgsc.bcm.edu	37	3	73673578	73673578	+	Silent	SNP	G	G	C	rs6763344		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	PDZRN3-232	NM_015009	exon1	c.C399G	p.A133A	GTCGCAGGCGTCG	.	2	2	1	1	G|0.119;C|0.881	0	0	0	0	0
ACPL2	92370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	140979087	140979087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ACPL2-91	NM_152282	exon4	c.C70A	p.L24M	CTCAGCCTGCAGT	.	46	22	47	0	.	0	0	0	0	0
ZNF721	170960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	437056	437056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ZNF721-47	NM_133474	exon3	c.G1200C	p.M400I	TGTTGAACTATTA	.	56	24	59	0	.	12	1	3	8	0
SLC26A1	10861	hgsc.bcm.edu;broad.mit.edu	37	4	983983	983983	+	Silent	SNP	T	T	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SLC26A1-91	NM_022042	exon3	c.A744G	p.T248T	CAGCCATGTGAGG	.	7	5	9	0	.	5	3	2	0	0
SH3BP2	6452	hgsc.bcm.edu;bcgsc.ca	37	4	2824664	2824664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SH3BP2-514	NM_001145856	exon3	c.C310T	p.P104S	ACAGGGCCCCTGC	.	33	14	22	0	.	0	0	0	0	0
MFSD10	10227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	2934166	2934166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	MFSD10-68	NM_001120	exon5	c.T605C	p.M202T	GGTGCCATTTCCA	.	64	26	69	0	.	120	52	68	0	0
SEC24D	9871	bcgsc.ca	37	4	119666217	119666217	+	Splice_Site	SNP	T	T	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SEC24D-90	NM_014822	exon15	c.1708-2A>T	.	GCTGCCTAAAAAA	.	68	9	64	3	.	0	0	0	0	0
TKTL2	84076	hgsc.bcm.edu	37	4	164394649	164394649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	TKTL2-95	NM_032136	exon1	c.G238T	p.A80S	TAGGAGCAGCATG	.	40	2	51	0	.	0	0	0	0	0
ZFR	51663	hgsc.bcm.edu	37	5	32407029	32407029	+	Silent	SNP	A	A	T	rs139769264		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ZFR-90	NM_016107	exon6	c.T882A	p.A294A	AGCAGCAGCTGCT	.	53	3	60	0	A|1.000;T|0.000	12	11	0	0	1
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	101834204	101834204	+	Silent	SNP	C	C	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SLCO6A1-96	NM_173488	exon1	c.G345T	p.L115L	TATGAGCAGGATG	.	73	35	73	0	.	0	0	0	0	0
IL9	3578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	135228124	135228124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	IL9-90	NM_000590	exon5	c.A391G	p.I131V	GGAAAATTTCCAG	.	49	23	74	0	.	0	0	0	0	0
SLC35A4	113829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	139947279	139947279	+	Silent	SNP	T	T	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SLC35A4-90	NM_080670	exon3	c.T525A	p.A175A	AGCAGCTGCTGCC	.	73	35	89	0	.	36	19	17	0	0
TREM2	54209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	41129014	41129014	+	Silent	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	TREM2-91	NM_018965	exon2	c.G378A	p.V126V	CACCTCCACCAGG	.	42	13	45	0	.	0	0	0	0	0
TJAP1	93643	hgsc.bcm.edu	37	6	43466779	43466779	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	TJAP1-90	NM_080604	exon4	c.G40C	p.A14P	CGTAAGGCACCAC	.	51	4	51	0	.	8	8	0	0	0
LCA5	167691	hgsc.bcm.edu	37	6	80197555	80197555	+	Silent	SNP	C	C	T	rs141642284		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	LCA5-90	NM_001122769	exon8	c.G1260A	p.K420K	TTTTTGCTTTTTA	.	38	2	44	0	C|1.000;T|0.000	2	2	0	0	0
TMEM120A	83862	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	75617074	75617074	+	Missense_Mutation	SNP	C	C	T	rs201249328		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	.	.	.	.	.	AGCGCCCGCAGGC	.	36	9	33	0	.	46	30	16	0	0
WDR91	29062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	134873248	134873248	+	Silent	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	WDR91-137	NM_014149	exon13	c.G1818A	p.E606E	GTAGACCTCCCCG	.	304	64	217	0	.	119	76	43	0	0
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	48744423	48744423	+	Silent	SNP	G	G	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	PRKDC-1515	.	.	.	.	CAAACTGAGCTTC	.	196	76	221	0	.	7	4	3	0	0
VCPIP1	80124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	67577113	67577113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	VCPIP1-662	NM_025054	exon1	c.T2081C	p.L694P	CCAGTAAGAATAA	.	151	58	158	0	.	3	2	1	0	0
TAF2	6873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	120816142	120816142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	TAF2-274	NM_003184	exon5	c.C536T	p.S179F	CCACAAGAGAAAA	.	160	75	226	0	.	0	0	0	0	0
TNFSF15	9966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	117552848	117552848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	TNFSF15-227	NM_005118	exon4	c.C640T	p.L214F	CTCCGAGGTAGAT	.	91	39	84	0	.	0	0	0	0	0
TNC	3371	hgsc.bcm.edu	37	9	117853282	117853282	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	TNC-517	NM_002160	exon2	c.C16G	p.Q6E	ACAGCTGAGTCAT	.	24	2	41	0	.	7	7	0	0	0
PIP5KL1	138429	hgsc.bcm.edu;broad.mit.edu	37	9	130684238	130684238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	PIP5KL1-240	NM_001135219	exon10	c.G1073A	p.R358Q	TCCAGCCGCTTGC	.	5	4	12	0	.	0	0	0	0	0
C9orf69	90120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139008421	139008421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	.	NM_152833	exon2	c.G326A	p.R109H	ACCAGGCGGAAGT	.	24	12	28	0	.	11	6	5	0	0
TMEM27	57393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	15682860	15682860	+	Silent	SNP	A	A	G	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	TMEM27-131	NM_020665	exon1	c.T39C	p.H13H	TTCAGCATGAATG	.	34	26	34	0	.	134	1	133	0	0
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	122756985	122756985	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	THOC2-133	NM_001081550	exon29	c.A3653T	p.K1218I	TCCGATTTAGATG	.	67	60	73	0	.	19	0	19	0	0
FLNA	2316	hgsc.bcm.edu	37	X	153592962	153592962	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	FLNA-599	NM_001456	exon13	c.G1954C	p.E652Q	TGTCTTCGCTGTT	.	49	3	46	0	.	45	45	0	0	0
PDZD8	118987	hgsc.bcm.edu	37	10	119049810	119049814	+	Frame_Shift_Del	DEL	AGACG	AGACG	-	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	AGACG	AGACG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	PDZD8-90	NM_173791	exon4	c.1144_1148del	p.382_383del	.	.	46	12	57	0	.	0	0	0	0	0
PCDH17	27253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	58208351	58208351	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	PCDH17-97	NM_001040429	exon1	c.1671delG	p.S557fs	.	.	93	21	78	0	.	0	0	0	0	0
MTHFD1	4522	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	64914978	64914979	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	MTHFD1-92	NM_005956	exon23	c.2222_2223del	p.741_741del	.	.	47	16	55	0	.	0	0	0	0	0
ZNF263	10127	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	3339974	3339974	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ZNF263-94	NM_005741	exon6	c.1468delT	p.Y490fs	.	.	68	19	53	0	.	0	0	0	0	0
KIDINS220	57498	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	8872073	8872073	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	KIDINS220-93	NM_020738	exon30	c.4093delT	p.S1365fs	.	.	129	43	141	0	.	0	0	0	0	0
ERC2	26059	broad.mit.edu	37	3	55733470	55733472	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	TGG	TGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ERC2-24	NM_015576	exon15	c.2775_2777del	p.925_926del	TGGTGATGGTGGT	.	359	7	271	0	.	0	0	0	0	0
SH3BP2	6452	broad.mit.edu	37	4	2824661	2824661	+	Splice_Site	DEL	G	G	-	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SH3BP2-514	NM_001122681	exon3	c.137-1G>-	.	CCCACAGGGCCCC	.	27	11	21	0	.	0	0	0	0	0