Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 H6PD 9563 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 9305536 9305536 + Silent SNP C C T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . H6PD-90 NM_004285 exon2 c.C543T p.F181F CCACTTCTCAGCC . 101 39 108 0 . 10 5 5 0 0 NCMAP 400746 broad.mit.edu;bcgsc.ca 37 1 24921934 24921934 + Missense_Mutation SNP A A T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . . NM_001010980 exon2 c.A13T p.T5S ACAGCCACCCCTC . 78 36 93 3 . 1 1 0 0 0 KANK4 163782 bcgsc.ca 37 1 62740358 62740358 + Missense_Mutation SNP A A T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . KANK4-74 NM_181712 exon3 c.T418A p.L140M CTTCCAACTGTCT . 61 27 51 1 . 0 0 0 0 0 RABGGTB 5876 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 76253203 76253203 + Missense_Mutation SNP A A G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . RABGGTB-227 NM_004582 exon2 c.A25G p.I9V GATGTTATTATCA . 162 72 127 0 . 113 56 57 0 0 OVGP1 5016 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 111957940 111957940 + Missense_Mutation SNP A A C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . OVGP1-135 NM_002557 exon11 c.T1183G p.F395V GCCAAAATTGTGG . 98 38 91 0 . 63 34 29 0 0 NOTCH2 4853 bcgsc.ca 37 1 120506375 120506375 + Nonsense_Mutation SNP G G T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . NOTCH2-1441 NM_024408 exon11 c.C1737A p.C579X ATGGTGGCAAGGA . 93 5 74 0 . 14 14 0 0 0 CCT3 7203 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 156294858 156294858 + Silent SNP A A G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . CCT3-92 NM_005998 exon6 c.T327C p.A109A GTGCTCAGCTACA . 36 17 30 0 . 172 88 84 0 0 HHIPL2 79802 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 222705394 222705394 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . HHIPL2-69 NM_024746 exon6 c.G1637A p.C546Y CCCAGGCAAAGAT . 65 31 56 0 . 0 0 0 0 0 C1orf95 375057 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 226784625 226784625 + Missense_Mutation SNP G G A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . C1orf95-91 NM_001003665 exon2 c.G325A p.V109I GCCATCGTCATGG . 91 38 84 0 . 0 0 0 0 0 CYP26C1 340665 broad.mit.edu 37 10 94828244 94828244 + Silent SNP C C A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . CYP26C1-90 NM_183374 exon6 c.C1359A p.G453G GTTCGGCGGCGGT . 54 4 42 0 . 0 0 0 0 0 MUC5B 727897 hgsc.bcm.edu 37 11 1276776 1276776 + Missense_Mutation SNP G G T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . . NM_002458 exon37 c.G16054T p.G5352C GCAACCGGTGGCC . 62 4 53 0 . 0 0 0 0 0 OSBPL5 114879 ucsc.edu 37 11 3143330 3143330 + Splice_Site SNP T T C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . OSBPL5-113 NM_001144063 exon6 c.301-2A>G . TGCGCCTGGGCCC . 39 4 33 0 . 0 0 0 0 0 DTX4 23220 ucsc.edu;bcgsc.ca 37 11 58949824 58949824 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . DTX4-501 NM_015177 exon2 c.C824T p.A275V CTCCTGCCAGTCC . 32 4 30 0 . 2 2 0 0 0 SF3B2 10992 broad.mit.edu;bcgsc.ca 37 11 65826742 65826742 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . SF3B2-92 NM_006842 exon11 c.C1253T p.A418V CTGCAGCCCCCAA . 141 6 132 0 . 153 152 1 0 0 VPS26B 112936 broad.mit.edu;bcgsc.ca 37 11 134095054 134095054 + Missense_Mutation SNP A A T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . VPS26B-90 NM_052875 exon1 c.A38T p.E13V AGGTGGAAATCCT . 89 44 92 2 . 7 5 2 0 0 WNT10B 7480 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 49362081 49362081 + Missense_Mutation SNP G G T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . WNT10B-565 NM_003394 exon4 c.C359A p.S120Y GAGAAGGAAAAAG . 16 12 16 0 . 0 0 0 0 0 BAZ2A 11176 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 57006901 57006901 + Missense_Mutation SNP T T A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . BAZ2A-22 NM_013449 exon5 c.A1039T p.N347Y TAGCATTATTGAG . 122 57 88 1 . 8 2 6 0 0 TMTC2 160335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 83251132 83251132 + Missense_Mutation SNP G G T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . TMTC2-92 NM_152588 exon2 c.G427T p.G143W GATGTCGGGGCCA . 84 37 82 0 . 1 0 1 0 0 FOXA1 3169 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 38060788 38060788 + Missense_Mutation SNP A A T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . FOXA1-226 NM_004496 exon2 c.T1201A p.S401T TGATGGAGAACGG . 116 63 98 0 . 1 1 0 0 0 C14orf169 79697 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 73959009 73959009 + Missense_Mutation SNP G G A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . . . . . . TGGGGTGACTTCT . 53 24 45 0 . 13 8 5 0 0 IRF2BPL 64207 hgsc.bcm.edu 37 14 77493794 77493794 + Silent SNP T T C rs28718623 TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . IRF2BPL-90 NM_024496 exon1 c.A342G p.Q114Q CTGCTGTTGCTGC . 6 5 3 0 . 9962 69 9878 4 11 MOK 5891 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 102718326 102718326 + Missense_Mutation SNP C C A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . . NM_014226 exon5 c.G290T p.R97I GGGTATCTTCTCC . 130 60 124 0 . 0 0 0 0 0 C15orf56 644809 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 40544920 40544920 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . C15orf56-68 NM_001039905 exon1 c.G170A p.R57Q GAGGTTCGCGGCG . 137 59 121 0 . 1 1 0 0 0 EME2 197342 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 1826070 1826070 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . EME2-229 NM_001257370 exon8 c.C971T p.A324V CCTAGGCGCTGGA . 62 22 39 0 . 0 0 0 0 0 ABCA3 21 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 2369834 2369834 + Missense_Mutation SNP G G C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . ABCA3-1015 NM_001089 exon8 c.C621G p.I207M TTCCCGGATGTAC . 33 10 34 0 . 0 0 0 0 0 PRM3 58531 hgsc.bcm.edu 37 16 11367405 11367405 + Missense_Mutation SNP G G C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . . NM_021247 exon1 c.C48G p.H16Q TGGGCTGTGGCCT . 21 7 15 0 . 0 0 0 0 0 DCTPP1 79077 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 30435583 30435583 + Missense_Mutation SNP A A T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . DCTPP1-90 NM_024096 exon3 c.T484A p.C162S AGTCACAGGGAAT . 80 43 54 0 . 77 35 42 0 0 DHX38 9785 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 72142801 72142801 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . DHX38-227 NM_014003 exon24 c.C3358T p.H1120Y GTGTATCACGAGT . 62 23 80 0 . 26 14 12 0 0 NCOR1 9611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 15971431 15971431 + Silent SNP T T G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . NCOR1-229 NM_001190440 exon31 c.A4566C p.T1522T AGAAATTGTAACT . 117 32 90 0 . 0 0 0 0 0 CCR7 1236 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 38711306 38711306 + Missense_Mutation SNP G G T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . CCR7-659 NM_001838 exon3 c.C825A p.F275L CAGCTGGAAGACT . 129 41 72 0 . 0 0 0 0 0 SLC4A1 6521 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 42335911 42335911 + Silent SNP T T A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . SLC4A1-92 NM_000342 exon10 c.A957T p.L319L CAGCACTAGGCTG . 189 56 118 1 . 0 0 0 0 0 PPP1R9B 84687 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 48216644 48216644 + Missense_Mutation SNP T T C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . PPP1R9B-90 . . . . AGCTGCTGGATCT . 55 16 39 0 . 52 37 15 0 0 KIF2B 84643 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 51901648 51901648 + Silent SNP C C T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . KIF2B-98 NM_032559 exon1 c.C1254T p.V418V ACCTGTCAACGCT . 221 68 137 0 . 0 0 0 0 0 KCNH6 81033 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 61613115 61613115 + Missense_Mutation SNP A A G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . KCNH6-91 NM_030779 exon6 c.A1187G p.Y396C CTGAGTATGGGGC . 98 56 72 1 . 0 0 0 0 0 LAMA1 284217 broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 6992669 6992669 + Silent SNP G G A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . LAMA1-149 NM_005559 exon36 c.C5059T p.L1687L TGGGTAGTAGGAA . 137 69 118 1 . 6 5 1 0 0 ANKRD12 23253 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 9257703 9257703 + Missense_Mutation SNP C C G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . ANKRD12-92 NM_015208 exon9 c.C4438G p.Q1480E TGTGCTCAGGATC . 104 40 118 0 . 3 2 1 0 0 MBP 4155 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 74700845 74700845 + Silent SNP C C T rs112511603 TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . MBP-515 NM_001025101 exon6 c.G705A p.P235P CTGCGACGGGGGT . 65 28 80 0 C|0.500;T|0.500 0 0 0 0 0 ZNF43 7594 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 21990696 21990696 + Missense_Mutation SNP A A T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . ZNF43-154 NM_001256653 exon4 c.T2170A p.F724I GGTTAAAAGCTTT . 37 20 27 0 . 7 6 1 0 0 FBXO46 23403 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 46215847 46215847 + Missense_Mutation SNP T T C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . FBXO46-159 NM_001080469 exon2 c.A907G p.K303E TGATCTTGTCCTT . 101 47 75 0 . 5 0 5 0 0 FANCL 55120 broad.mit.edu 37 2 58386912 58386912 + Silent SNP T T C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . FANCL-661 NM_001114636 exon14 c.A1131G p.G377G TTTCCTTCCAGAC . 158 6 142 0 . 11 11 0 0 0 CTNNA2 1496 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 80136916 80136916 + Missense_Mutation SNP T T C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . CTNNA2-368 NM_001164883 exon7 c.T1049C p.M350T AGTACATGAATAA . 169 70 156 0 . 0 0 0 0 0 ZNF804A 91752 hgsc.bcm.edu 37 2 185802211 185802211 + Missense_Mutation SNP C C A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . ZNF804A-163 NM_194250 exon4 c.C2088A p.N696K AAAGAACACAATA . 570 32 137 0 . 0 0 0 0 0 ZNF804A 91752 hgsc.bcm.edu 37 2 185802216 185802216 + Missense_Mutation SNP T T C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . ZNF804A-163 NM_194250 exon4 c.T2093C p.I698T ACACAATACTTTT . 569 30 137 0 . 0 0 0 0 0 WDR75 84128 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 190306269 190306269 + Missense_Mutation SNP G G C rs201125667 TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . WDR75-92 NM_032168 exon1 c.G51C p.L17F CGAGTTGAACTTT . 406 80 173 1 G|0.999;C|0.001 20 13 7 0 0 CUL3 8452 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 225362540 225362540 + Missense_Mutation SNP C C G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . CUL3-229 NM_001257198 exon12 c.G1655C p.R552P AGCTGTCGACCAC . 52 48 122 0 . 33 0 33 0 0 TRIP12 9320 bcgsc.ca 37 2 230675639 230675639 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . TRIP12-572 NM_004238 exon14 c.G2034A p.M678I GGAACACATCAGA . 167 149 262 4 . 7 0 7 0 0 FRG1B 284802 bcgsc.ca 37 20 29625956 29625956 + RNA SNP G G A rs147809085 TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . FRG1B-22 . . . . GACCAAGAGAACA . 462 15 415 6 . 92 92 0 0 0 EDN3 1908 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 57876603 57876603 + Missense_Mutation SNP G G T rs457651 alternate_allele TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . EDN3-91 NM_207034 exon2 c.G191T p.G64V GCGAGGGGACTGT . 94 43 77 0 G|1.000;A|0.000 0 0 0 0 0 CISH 1154 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 50645901 50645901 + Missense_Mutation SNP C C A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . CISH-710 NM_013324 exon3 c.G195T p.E65D GGTACCCTCTGCC . 49 28 64 0 . 64 35 29 0 0 DNAH1 25981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 52380547 52380547 + Missense_Mutation SNP C C A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . DNAH1-67 NM_015512 exon11 c.C1716A p.S572R CAGCAGCCTGCGC . 42 11 36 0 . 1 1 0 0 0 A4GNT 51146 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 137849689 137849689 + Splice_Site SNP A A C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . A4GNT-90 NM_016161 exon3 c.408+2T>G . ACACTTACTTGAT . 195 96 136 0 . 0 0 0 0 0 PLS1 5357 ucsc.edu;bcgsc.ca 37 3 142403182 142403182 + Missense_Mutation SNP A A G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . PLS1-91 NM_001172312 exon8 c.A833G p.Y278C TGAACTACCATCT . 230 112 212 2 . 57 30 27 0 0 ACTL6A 86 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 179298770 179298770 + Nonsense_Mutation SNP G G T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . ACTL6A-91 NM_004301 exon10 c.G919T p.G307X CCAGAAGGATTAT . 304 158 306 2 . 17 17 0 0 0 KLB 152831 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 39435920 39435920 + Nonsense_Mutation SNP G G T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . KLB-69 NM_175737 exon2 c.G916T p.E306X TGGATCGAGCCAA . 185 76 175 1 . 0 0 0 0 0 WDFY3 23001 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 85722839 85722839 + Missense_Mutation SNP C C A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . WDFY3-93 NM_014991 exon17 c.G2786T p.R929L GCTAATCGTTCAA . 36 16 24 0 . 3 1 2 0 0 ADAMTS12 81792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 33534943 33534943 + Missense_Mutation SNP C C A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . ADAMTS12-232 NM_030955 exon23 c.G4601T p.S1534I CCGGCACTTTTCT . 91 44 65 0 . 0 0 0 0 0 PCDHB14 56122 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 140605127 140605127 + Missense_Mutation SNP G G A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . PCDHB14-91 NM_018934 exon1 c.G2050A p.D684N CAGGCCGACTCCC . 73 5 85 0 . 3 3 0 0 0 E2F3 1871 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 20490451 20490451 + Missense_Mutation SNP C C G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . E2F3-414 NM_001949 exon7 c.C1188G p.N396K GGGAAACCTTTCT . 101 52 83 0 . 2 1 1 0 0 HLA-A 3105 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 29910554 29910554 + Missense_Mutation SNP T T G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . HLA-A-92 NM_001242758 exon2 c.T94G p.F32V AGGTATTTCTTCA . 134 38 109 0 . 958 958 0 0 0 BRD2 6046 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 6 32944714 32944714 + Splice_Site SNP G G A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . BRD2-398 NM_005104 exon7 c.1200+1G>A . GTCAAGGTACCCA . 42 21 29 0 . 21 1 20 0 0 CAPN11 11131 broad.mit.edu 37 6 44148401 44148401 + Splice_Site SNP T T G rs200836901 alternate_allele TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . CAPN11-136 NM_007058 exon16 c.1746+2T>G . GAGAGGTGAGCAG . 76 21 89 15 T|0.999;A|0.000 0 0 0 0 0 MDN1 23195 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 90392973 90392973 + Missense_Mutation SNP T T G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . MDN1-100 NM_014611 exon73 c.A11980C p.K3994Q CTTCCTTGTCACT . 113 46 99 1 . 0 0 0 0 0 ASCC3 10973 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 101075824 101075824 + Missense_Mutation SNP C C A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . ASCC3-96 NM_006828 exon28 c.G4415T p.R1472L TTTGTTCGAGATA . 69 30 74 0 . 10 1 9 0 0 NRCAM 4897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 107807453 107807453 + Missense_Mutation SNP T T C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . NRCAM-156 NM_001037132 exon27 c.A3379G p.M1127V CTGGCATTAGACC . 133 50 123 0 . 0 0 0 0 0 OR6V1 346517 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 142750247 142750247 + Missense_Mutation SNP G G C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . OR6V1-23 NM_001001667 exon1 c.G810C p.K270N CAGGAAGGTCGTG . 80 41 72 0 . 0 0 0 0 0 DNAJB6 10049 broad.mit.edu;bcgsc.ca 37 7 157177601 157177601 + Silent SNP T T C novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . DNAJB6-93 NM_058246 exon7 c.T519C p.T173T CCTCACTTCATTC . 95 37 78 1 . 31 31 0 0 0 DNAJB6 10049 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 157177612 157177612 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . DNAJB6-93 NM_058246 exon7 c.C530T p.S177F TCTCTTCCACGTC . 104 43 96 1 . 61 61 0 0 0 SNAI2 6591 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 49833817 49833817 + Missense_Mutation SNP C C G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . SNAI2-188 NM_003068 exon1 c.G8C p.R3P AAGGAGCGCGGCA . 38 22 36 0 . 0 0 0 0 0 RFX3 5991 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 3301560 3301560 + Missense_Mutation SNP G G A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . RFX3-93 NM_134428 exon6 c.C535T p.L179F TGAGAAGAGAGCT . 87 44 75 0 . 0 0 0 0 0 RASEF 158158 broad.mit.edu;bcgsc.ca 37 9 85637283 85637283 + Missense_Mutation SNP T T G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . RASEF-280 NM_152573 exon3 c.A637C p.I213L CCTGAATCCTCTG . 69 27 95 2 . 7 4 3 0 0 GLUD2 2747 ucsc.edu 37 X 120183026 120183026 + Missense_Mutation SNP T T G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . GLUD2-131 NM_012084 exon1 c.T1488G p.S496R AGACAGTATATCG . 176 2 145 0 . 157 5 151 1 0 ATP11C 286410 broad.mit.edu;bcgsc.ca 37 X 138857091 138857091 + Missense_Mutation SNP C C G novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . ATP11C-198 NM_001010986 exon19 c.G1983C p.E661D AATGGTCTCTGCA . 97 54 94 1 . 2 2 0 0 0 CNGA2 1260 bcgsc.ca 37 X 150912596 150912596 + Missense_Mutation SNP C C A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . CNGA2-193 NM_005140 exon7 c.C1621A p.R541S AATATCCGCAGCC . 97 5 90 1 . 0 0 0 0 0 KANK4 163782 bcgsc.ca 37 1 62740357 62740357 + Frame_Shift_Del DEL A A - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . KANK4-74 NM_181712 exon3 c.419delT p.L140fs GCTTCCAACTGTC . 61 24 50 1 . 0 0 0 0 0 KANK4 163782 hgsc.bcm.edu 37 1 62740357 62740358 + Frame_Shift_Del DEL AA AA - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 AA AA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . KANK4-74 NM_181712 exon3 c.418_419del p.140_140del . . 62 15 51 0 . 0 0 0 0 0 CASC5 57082 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 40914359 40914359 + Frame_Shift_Del DEL A A - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . CASC5-660 NM_170589 exon11 c.1975delA p.S659fs . . 111 45 103 0 . 0 0 0 0 0 ADCY9 115 hgsc.bcm.edu;bcgsc.ca 37 16 4042307 4042307 + Frame_Shift_Del DEL C C - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . ADCY9-139 NM_001116 exon5 c.2047delG p.E683fs . . 76 26 69 0 . 0 0 0 0 0 MYH13 8735 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 10215392 10215392 + Frame_Shift_Del DEL A A - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . MYH13-6 NM_003802 exon32 c.4367delT p.V1456fs . . 93 30 63 0 . 0 0 0 0 0 DLX2 1746 broad.mit.edu 37 2 172967129 172967131 + In_Frame_Del DEL GCT GCT - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 GCT GCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . DLX2-515 NM_004405 exon1 c.136_138del p.46_46del GTGGAGGCTGCTG . 280 12 78 0 . 0 0 0 0 0 TFPI 7035 broad.mit.edu 37 2 188332481 188332481 + Frame_Shift_Del DEL T T - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . TFPI-91 NM_006287 exon7 c.807delA p.K269fs TATACCTTTTTTA . 615 9 118 0 . 0 0 0 0 0 FAM117B 150864 broad.mit.edu 37 2 203500041 203500043 + In_Frame_Del DEL AGC AGC - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 AGC AGC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . FAM117B-91 NM_173511 exon1 c.131_133del p.44_45del AGCTGAAGCAGCA . 13 4 19 0 . 0 0 0 0 0 NEFH 4744 hgsc.bcm.edu 37 22 29885581 29885604 + In_Frame_Del DEL AGGCCAAGTCCCCAGAGAAGGAAG AGGCCAAGTCCCCAGAGAAGGAAG - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 AGGCCAAGTCCCCAGAGAAGGAAG AGGCCAAGTCCCCAGAGAAGGAAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . NEFH-90 NM_021076 exon4 c.1952_1975del p.651_659del . . 114 47 242 0 . 0 0 0 0 0 ULK4 54986 hgsc.bcm.edu;bcgsc.ca 37 3 41795965 41795965 + Frame_Shift_Del DEL T T - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . ULK4-297 NM_017886 exon22 c.2209delA p.I737fs . . 123 42 106 0 . 0 0 0 0 0 IL17RB 55540 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 53886139 53886147 + In_Frame_Del DEL CCCTCTGGT CCCTCTGGT - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 CCCTCTGGT CCCTCTGGT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . IL17RB-229 NM_018725 exon4 c.340_348del p.114_116del . . 103 35 126 0 . 0 0 0 0 0 PRKCI 5584 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 170020905 170020905 + Frame_Shift_Del DEL A A - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . PRKCI-1378 NM_002740 exon18 c.1781delA p.E594fs . . 86 36 71 0 . 0 0 0 0 0 CD83 9308 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 14133946 14133946 + Frame_Shift_Del DEL C C - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . CD83-90 NM_004233 exon4 c.449delC p.A150fs . . 107 49 73 0 . 0 0 0 0 0 MTSS1 9788 hgsc.bcm.edu;bcgsc.ca 37 8 125570101 125570101 + Frame_Shift_Del DEL A A - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . MTSS1-91 NM_014751 exon11 c.1051delT p.S351fs . . 56 17 67 0 . 0 0 0 0 0 EXOSC2 23404 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 133579154 133579154 + Frame_Shift_Del DEL A A - novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . EXOSC2-91 NM_014285 exon9 c.875delA p.E292fs . . 92 46 67 0 . 0 0 0 0 0 TMEM97 27346 broad.mit.edu 37 17 26653806 26653807 + Frame_Shift_Ins INS - - A novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . TMEM97-90 NM_014573 exon3 c.518_519insA p.R173fs AGAAAAGAAAAAA . 87 8 52 0 . 0 0 0 0 0 AR 367 hgsc.bcm.edu 37 X 66765207 66765208 + Missense_Mutation DNP GC GC AG novel TCGA-A4-A5Y0-01A-11D-A31X-10 TCGA-A4-A5Y0-11A-11D-A31X-10 GC GC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 257fa140-0c01-4edc-8247-82c96ecfb384 6022828f-21e4-4e71-8abd-439d01decea4 . AR-661 NM_000044 exon1 c.C220G p.Q74E CAGCAGCAGCAGC . 104.0 8.0 97.0 0.0 . 0 0 0 0 0