Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 TMEM51 55092 broad.mit.edu 37 1 15541888 15541888 + Missense_Mutation SNP A A C novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . TMEM51-90 NM_018022 exon2 c.A305C p.H102P TCCAGCACCCGAC . 47 8 43 8 . 137 133 3 0 1 CD53 963 broad.mit.edu 37 1 111440473 111440473 + Missense_Mutation SNP C C A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . CD53-90 NM_000560 exon7 c.C547A p.L183M AATTTCCTGTATA . 82 4 72 0 . 37 37 0 0 0 CD1C 911 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 158261919 158261919 + Missense_Mutation SNP G G A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . CD1C-94 NM_001765 exon3 c.G374A p.G125E ATTCTGGAAAGAG . 192 89 154 0 . 1 1 0 0 0 SHCBP1L 81626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 182898789 182898789 + Missense_Mutation SNP G G T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . SHCBP1L-91 NM_030933 exon6 c.C1175A p.T392N ATTTCAGTAGTCA . 38 16 21 0 . 0 0 0 0 0 TMEM9 252839 ucsc.edu;bcgsc.ca 37 1 201104800 201104800 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . TMEM9-90 NM_016456 exon6 c.G543A p.M181I GCTGAGCATCTTG . 377 166 214 2 . 981 500 480 0 1 NVL 4931 bcgsc.ca 37 1 224468833 224468833 + Silent SNP G G A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . NVL-92 NM_002533 exon16 c.C1954T p.L652L TGTTTAGTAATTC . 58 18 38 1 . 0 0 0 0 0 IBA57 200205 broad.mit.edu 37 1 228362441 228362441 + Missense_Mutation SNP C C A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . IBA57-90 NM_001010867 exon2 c.C390A p.S130R TGACAGCTCGGTG . 117 12 24 0 . 4 4 0 0 0 CUBN 8029 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 17169853 17169853 + Missense_Mutation SNP C C A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . CUBN-166 NM_001081 exon3 c.G323T p.S108I ATTTGACTAGATA . 39 19 58 0 . 0 0 0 0 0 SLC25A28 81894 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 101370968 101370968 + Missense_Mutation SNP T T A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . SLC25A28-90 NM_031212 exon4 c.A733T p.T245S CATAGGTCATGAA . 137 44 185 0 . 42 24 18 0 0 VAX1 11023 hgsc.bcm.edu 37 10 118893699 118893699 + Silent SNP C C T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . VAX1-92 NM_001112704 exon3 c.G825A p.L275L CACCGGCAGGCTG . 15 8 7 0 . 0 0 0 0 0 PDZD8 118987 broad.mit.edu 37 10 119044855 119044855 + Silent SNP G G A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . PDZD8-90 NM_173791 exon5 c.C1389T p.G463G CAACTGGCCAAAG . 110 3 126 0 . 45 45 0 0 0 MUC2 4583 broad.mit.edu 37 11 1092950 1092950 + Missense_Mutation SNP C C T rs199605832 TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . MUC2-90 NM_002457 exon30 c.C4769T p.T1590I CCACCACTACGGT . 183 6 143 0 . 0 0 0 0 0 MUC2 4583 bcgsc.ca 37 11 1093346 1093346 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . MUC2-90 NM_002457 exon30 c.C5165T p.T1722I CCCCGACACCCAT . 162 12 106 0 . 0 0 0 0 0 MUC5B 727897 hgsc.bcm.edu 37 11 1253980 1253980 + Missense_Mutation SNP A A G rs202127660 TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . . NM_002458 exon17 c.A2045G p.D682G TCAGCGACTGGAG . 153 12 53 0 . 0 0 0 0 0 KCNQ1 3784 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 2798240 2798240 + Silent SNP C C G novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . KCNQ1-515 NM_000218 exon14 c.C1710G p.P570P GAAGCCCTCACTG . 185 53 142 0 . 22 21 1 0 0 RASSF10 644943 broad.mit.edu 37 11 13031528 13031528 + Silent SNP G G T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . . NM_001080521 exon1 c.G405T p.L135L ATCGCTGCCTAAC . 78 9 13 1 . 0 0 0 0 0 SOX6 55553 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 16010773 16010773 + Missense_Mutation SNP C C A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . SOX6-93 NM_001145819 exon14 c.G1775T p.S592I GCTTTACTTCCTG . 143 61 97 1 . 0 0 0 0 0 KCNA4 3739 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 30032894 30032894 + Silent SNP T T C novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . KCNA4-517 NM_002233 exon2 c.A1332G p.R444R AATGATTCTGAGG . 104 30 71 0 . 0 0 0 0 0 AMBRA1 55626 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 46419222 46419222 + Silent SNP G G A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . AMBRA1-136 NM_001267782 exon20 c.C3684T p.G1228G GCTTAGGCCTCGC . 104 48 71 1 . 52 20 32 0 0 PRB1 5542 broad.mit.edu 37 12 11506352 11506352 + Missense_Mutation SNP G G T rs200997903 TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . PRB1-90 . . . . GGGGCTGGTTGCC . 150 7 87 4 G|0.999;T|0.001 0 0 0 0 0 C12orf39 80763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 21680692 21680692 + Silent SNP G G C novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . C12orf39-90 NM_030572 exon4 c.G177C p.R59R GAGCCGGAGAAAG . 215 158 203 1 . 154 0 154 0 0 MLL2 8085 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 49436945 49436945 + Missense_Mutation SNP G G A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . MLL2-612 NM_003482 exon25 c.C5558T p.A1853V GGGGATGCCTTCA . 104 8 96 0 . 4 4 0 0 0 MDM1 56890 ucsc.edu;bcgsc.ca 37 12 68715135 68715135 + Missense_Mutation SNP G G A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . MDM1-95 NM_017440 exon7 c.C997T p.P333S GATTTGGCATGTT . 43 4 47 0 . 0 0 0 0 0 UPF3A 65110 broad.mit.edu 37 13 115047559 115047559 + Silent SNP C C T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . UPF3A-91 NM_080687 exon2 c.C271T p.L91L CGCCCGCTGCCAG . 83 6 21 0 . 62 62 0 0 0 MYH7 4625 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 23886422 23886422 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . MYH7-94 NM_000257 exon32 c.G4459A p.A1487T CATAGGCGTTCTT . 83 34 97 0 . 0 0 0 0 0 NFKBIA 4792 broad.mit.edu 37 14 35871853 35871853 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . NFKBIA-721 NM_020529 exon5 c.G653A p.R218Q GCAGTCCGGCCAT . 95 4 114 0 . 551 543 8 0 0 ABHD12B 145447 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 51368558 51368558 + Silent SNP C C T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . ABHD12B-153 NM_001206673 exon10 c.C792T p.N264N CCGGAACATTCCA . 68 45 108 0 . 0 0 0 0 0 MPP5 64398 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 67787027 67787027 + Silent SNP T T C novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . MPP5-91 NM_022474 exon12 c.T1450C p.L484L ATCATCTTGATTG . 40 30 47 0 . 27 2 25 0 0 YLPM1 56252 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 75248111 75248111 + Nonsense_Mutation SNP G G A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . YLPM1-71 NM_019589 exon4 c.G1365A p.W455X AGAATGGGAGCGA . 166 124 197 0 . 1 0 1 0 0 CATSPERB 79820 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 92195753 92195753 + Missense_Mutation SNP T T C novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . CATSPERB-138 NM_024764 exon2 c.A71G p.Y24C TTATTATATACTA . 152 68 173 0 . 0 0 0 0 0 CASC5 57082 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 40913801 40913801 + Nonsense_Mutation SNP A A T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . CASC5-660 NM_170589 exon11 c.A1417T p.R473X AATATGAGAGAGG . 146 57 184 0 . 3 3 0 0 0 RNF111 54778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 59344604 59344604 + Missense_Mutation SNP G G T rs137923008 byfrequency;alternate_allele TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . RNF111-92 NM_017610 exon3 c.G981T p.E327D AGTGGAGATTGTA . 61 23 74 0 G|0.998;A|0.002 17 10 7 0 0 VPS13C 54832 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 62155703 62155703 + Nonsense_Mutation SNP C C A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . VPS13C-92 NM_020821 exon82 c.G10888T p.E3630X AAGTCTCTCCTTC . 115 41 151 0 . 23 19 4 0 0 PIAS1 8554 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 68434644 68434644 + Missense_Mutation SNP A A G novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . PIAS1-637 NM_016166 exon4 c.A571G p.K191E GGGACCAAATGTG . 150 55 131 0 . 18 10 8 0 0 IL16 3603 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 81517938 81517938 + Silent SNP A A G novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . IL16-653 NM_001172128 exon2 c.A198G p.T66T AGACACATCGGAG . 116 29 127 0 . 1 1 0 0 0 FANCI 55215 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 89856164 89856164 + Silent SNP A A T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . FANCI-92 NM_001113378 exon35 c.A3681T p.G1227G TACGGGAGAGAAA . 51 21 61 0 . 14 8 6 0 0 C16orf11 146325 hgsc.bcm.edu 37 16 614703 614703 + Missense_Mutation SNP G G C rs199532631 TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . C16orf11-23 NM_145270 exon3 c.G1112C p.W371S TGCTGTGGCCTGA . 30 5 0 0 . 0 0 0 0 0 BAIAP3 8938 bcgsc.ca 37 16 1397801 1397801 + Missense_Mutation SNP C C A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . BAIAP3-91 NM_003933 exon31 c.C3109A p.L1037M GCGGACCTGCTCC . 169 112 23 1 . 5 1 4 0 0 FAHD1 81889 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 1877593 1877593 + Silent SNP G G T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . FAHD1-90 NM_031208 exon1 c.G363T p.L121L GACTCTGGCGAAG . 273 39 114 0 . 277 220 57 0 0 PKD1 5310 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 2153522 2153522 + Missense_Mutation SNP T T C novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . PKD1-91 NM_000296 exon23 c.A8536G p.T2846A CCTTGGTGGAGAC . 91 68 28 1 . 298 283 15 0 0 PDXDC1 23042 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 15127164 15127164 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . PDXDC1-91 NM_015027 exon19 c.C1720T p.L574F AGCTGCCTTTATG . 206 143 98 2 . 282 64 218 0 0 CMTM4 146223 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 66670440 66670440 + Silent SNP T T A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . CMTM4-227 NM_178818 exon2 c.A231T p.A77A GGAGCATGCCATG . 95 5 120 0 . 9 9 0 0 0 PRDM7 11105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 90127007 90127007 + Missense_Mutation SNP A A T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . PRDM7-92 NM_001098173 exon9 c.T975A p.D325E CTCTTCATCATCC . 210 119 343 0 . 0 0 0 0 0 SHPK 23729 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 3514081 3514081 + Silent SNP G G T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . SHPK-69 NM_013276 exon7 c.C1210A p.R404R TGCCTCGGCACAG . 169 99 126 0 . 10 3 7 0 0 P2RX1 5023 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 3808622 3808622 + Missense_Mutation SNP G G C novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . P2RX1-70 NM_002558 exon2 c.C177G p.S59R GAGGCCGCTCGAG . 117 31 99 0 . 0 0 0 0 0 CAMTA2 23125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 4873373 4873373 + Missense_Mutation SNP G G A rs189574616 TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . CAMTA2-91 NM_001171167 exon18 c.C3082T p.P1028S CAAAGGGCAGTTC . 121 32 50 0 G|0.999;A|0.000 1 0 1 0 0 TP53I13 90313 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 27899239 27899239 + Missense_Mutation SNP C C G novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . TP53I13-90 NM_138349 exon6 c.C593G p.S198C AGCCCTCTTCTAG . 37 15 32 0 . 223 92 131 0 0 ATAD5 79915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 29220519 29220519 + Nonsense_Mutation SNP A A T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . ATAD5-93 NM_024857 exon21 c.A4648T p.K1550X GCTAGGAAACACT . 93 54 70 0 . 8 3 5 0 0 PIEZO2 63895 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 10691260 10691260 + Nonsense_Mutation SNP T T A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . . NM_022068 exon44 c.A6973T p.K2325X AGCTCTTGGTGAG . 272 76 194 0 . 8 8 0 0 0 RBBP8 5932 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 20606136 20606136 + Missense_Mutation SNP C C G novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . RBBP8-659 NM_002894 exon19 c.C2627G p.P876R CTTGTCCTCGTCC . 305 78 232 0 . 256 192 64 0 0 PCSK4 54760 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 1481811 1481811 + Missense_Mutation SNP G G A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . PCSK4-90 NM_017573 exon15 c.C2215T p.R739C TGGCACGGGAGAG . 104 12 75 0 . 23 18 4 0 1 NRTN 4902 hgsc.bcm.edu 37 19 5827909 5827909 + Missense_Mutation SNP G G A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . NRTN-90 NM_004558 exon2 c.G319A p.E107K CTGCGCGAGCTGG . 9 8 0 0 . 0 0 0 0 0 MED26 9441 bcgsc.ca 37 19 16688124 16688124 + Missense_Mutation SNP G G C novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . MED26-70 NM_004831 exon3 c.C517G p.L173V GGACCAGGGGGTC . 88 41 44 1 . 6 3 3 0 0 GAPDHS 26330 hgsc.bcm.edu 37 19 36033313 36033313 + Splice_Site SNP T T C novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . GAPDHS-226 NM_014364 exon5 c.540+2T>C . CTTCGGTAAGCTG . 87 13 58 0 . 1 1 0 0 0 TBCB 1155 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 36606539 36606539 + Missense_Mutation SNP A A T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . TBCB-90 NM_001281 exon1 c.A77T p.K26M CCGAGAAGCGATA . 159 72 98 0 . 67 44 23 0 0 FBL 2091 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 40330915 40330915 + Silent SNP G G A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . FBL-91 NM_001436 exon4 c.C336T p.V112V CCCAGGGACCAGG . 93 26 172 0 . 150 88 62 0 0 KLK5 25818 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 51451945 51451945 + Missense_Mutation SNP T T G novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . KLK5-226 NM_012427 exon5 c.A677C p.D226A GTGTCATCTATCT . 114 53 138 0 . 2 0 2 0 0 ZNF814 730051 hgsc.bcm.edu 37 19 58385793 58385793 + Missense_Mutation SNP C C T rs113623532 TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . . NM_001144989 exon3 c.G965A p.R322K TAAGGTCTTTTCC . 86 16 86 0 C|0.500;T|0.500 3 3 0 0 0 SMC6 79677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 17847696 17847696 + Missense_Mutation SNP T T G novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . SMC6-292 NM_001142286 exon27 c.A3152C p.Q1051P ATGCTTTGAGGTG . 43 22 33 0 . 0 0 0 0 0 IFIH1 64135 ucsc.edu 37 2 163139080 163139080 + Missense_Mutation SNP G G T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . IFIH1-91 NM_022168 exon6 c.C1102A p.L368I CAACTAGCAGTAC . 39 4 28 0 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 179547441 179547441 + Missense_Mutation SNP T T G novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . TTN-636 NM_001267550 exon135 c.A33077C p.H11026P TCTTCATGCTCTT . 107 55 82 0 . 0 0 0 0 0 FSIP2 401024 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 186671593 186671593 + Nonsense_Mutation SNP C C T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . FSIP2-90 NM_173651 exon17 c.C17827T p.Q5943X GGAAATCAGTTCC . 90 23 65 0 . 0 0 0 0 0 TNP1 7141 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 217724631 217724631 + Missense_Mutation SNP G G A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . TNP1-90 NM_003284 exon1 c.C127T p.R43W CGCCCCGTTTCCT . 156 74 126 0 . 0 0 0 0 0 AGFG1 3267 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 228399580 228399580 + Silent SNP C C G novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . AGFG1-228 NM_001135187 exon9 c.C1116G p.G372G AAGTGGCTTTGGG . 218 130 186 1 . 80 23 57 0 0 SH3BP4 23677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 235943690 235943690 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . SH3BP4-94 NM_014521 exon3 c.C44T p.P15L GCCTCCCTCGCTG . 80 30 76 0 . 18 6 12 0 0 PCSK2 5126 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 17417493 17417493 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . PCSK2-157 NM_002594 exon8 c.C850T p.L284F CGGGAGCTCACGC . 174 65 81 0 . 0 0 0 0 0 CST3 1471 hgsc.bcm.edu 37 20 23618488 23618488 + Silent SNP G G A rs1055084 TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . CST3-91 NM_000099 exon1 c.C12T p.P4P GCGCAGGGGCCCG . 8 5 0 0 T|0.037;C|0.962 308 78 230 0 0 FAM182A 284800 broad.mit.edu 37 20 26061817 26061817 + RNA SNP T T C novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . . . . . . TTCTCCTGCTTAG . 69 4 61 0 . 8 8 0 0 0 FRG1B 284802 bcgsc.ca 37 20 29623219 29623219 + RNA SNP A A G rs34726194 TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . FRG1B-22 . . . . TCGACAATGGTCT . 957 49 894 25 . 233 222 11 0 0 BPIFB1 92747 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 31892698 31892698 + Splice_Site SNP G G A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . . NM_033197 exon13 c.1254+1G>A . TTCCAAGTAAGTG . 201 73 98 0 . 0 0 0 0 0 MYT1 4661 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 62859303 62859303 + Missense_Mutation SNP A A T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . MYT1-704 NM_004535 exon18 c.A2654T p.K885M ACGACAAGGAGGA . 213 82 141 0 . 0 0 0 0 0 KRTAP26-1 388818 broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 31691828 31691828 + Missense_Mutation SNP G G C novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . KRTAP26-1-69 NM_203405 exon1 c.C526G p.L176V CGTGAAGACTTTG . 273 71 211 1 . 0 0 0 0 0 ZNF280A 129025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 22869192 22869192 + Missense_Mutation SNP T T C novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . ZNF280A-69 NM_080740 exon2 c.A763G p.I255V TTGAAATGTCTGT . 121 100 129 1 . 0 0 0 0 0 SELO 0 broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 50649114 50649114 + Silent SNP C C T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . . . . . . CGCGTACAGCAAG . 149 104 128 1 . 24 2 22 0 0 IQSEC1 9922 broad.mit.edu 37 3 12949941 12949941 + Missense_Mutation SNP A A T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . IQSEC1-91 NM_014869 exon12 c.T2705A p.L902Q CGGCTCAGTGTTC . 110 4 102 0 . 6 6 0 0 0 SETD2 29072 bcgsc.ca 37 3 47098860 47098860 + Silent SNP C C T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . SETD2-1273 NM_014159 exon15 c.G6414A p.Q2138Q CTGTTGCTGTTGT . 109 83 159 0 . 3 3 0 0 0 ATP1B3 483 bcgsc.ca 37 3 141626058 141626058 + Silent SNP T T C novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 T T - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . ATP1B3-90 NM_001679 exon3 c.T288C p.S96S ATTCAGTAGGTCT . 78 5 96 0 . 99 99 0 0 0 GPR87 53836 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 151012432 151012432 + Missense_Mutation SNP A A T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . GPR87-153 NM_023915 exon3 c.T602A p.V201D CATTTGACCCCCA . 178 36 125 0 . 0 0 0 0 0 BOD1L1 259282 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 13602646 13602646 + Missense_Mutation SNP T T G novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . . NM_148894 exon10 c.A5878C p.S1960R CTGCACTGGTCAC . 152 14 114 0 . 21 20 1 0 0 PDS5A 23244 bcgsc.ca 37 4 39851214 39851214 + Missense_Mutation SNP A A G novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . . NM_001100399 exon27 c.T3145C p.F1049L TCATAAAGGCATG . 76 23 90 0 . 25 25 0 0 0 SLC10A4 201780 hgsc.bcm.edu 37 4 48485850 48485850 + Missense_Mutation SNP C C G novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . SLC10A4-90 NM_152679 exon1 c.C272G p.P91R GGGCGCCCCACGC . 34 10 2 0 . 0 0 0 0 0 NMU 10874 hgsc.bcm.edu 37 4 56502304 56502304 + Missense_Mutation SNP G G T rs35771241 TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . NMU-650 NM_006681 exon1 c.C56A p.A19E GGGGACGCCGCGG . 14 12 0 0 G|0.970;T|0.030 3 0 3 0 0 KIAA1109 84162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 123260393 123260393 + Missense_Mutation SNP T T A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . KIAA1109-80 NM_015312 exon70 c.T12182A p.V4061E TACCAGTATCAAG . 121 66 115 0 . 41 18 23 0 0 TENM3 55714 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 183713663 183713663 + Silent SNP C C T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . . NM_001080477 exon25 c.C5838T p.V1946V GAGGGTCTTATTC . 206 69 149 0 . 2 1 1 0 0 NKD2 85409 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 1033498 1033498 + Missense_Mutation SNP G G A rs144426465 TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . NKD2-226 NM_001271082 exon5 c.G214A p.A72T CTCCCCGCTGAGA . 226 51 90 0 G|1.000;A|0.000 0 0 0 0 0 DEPDC1B 55789 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 59893587 59893587 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . DEPDC1B-91 NM_018369 exon11 c.G1583A p.R528Q TACATTCGAAAAC . 77 21 71 0 . 12 10 2 0 0 AP3B1 8546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 77521385 77521385 + Missense_Mutation SNP A A C novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . AP3B1-90 NM_003664 exon6 c.T584G p.L195R TTCAGAAGTTTTT . 88 54 46 0 . 65 25 39 1 0 IK 3550 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140037217 140037217 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . IK-67 NM_006083 exon10 c.C880T p.R294C GGAACCCGTAACA . 269 59 203 0 . 302 198 104 0 0 PCDHB6 56130 broad.mit.edu 37 5 140531290 140531290 + Silent SNP C C T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . PCDHB6-91 NM_018939 exon1 c.C1452T p.V484V CCAGGTCACCTAC . 237 7 137 1 . 1 0 1 0 0 PCDHGB3 56102 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140751665 140751665 + Silent SNP G G A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . . NM_018924 exon1 c.G1704A p.G568G TCTGGGGCCCGAA . 296 76 123 1 . 1 1 0 0 0 FAM65B 9750 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 24836059 24836059 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . FAM65B-91 NM_014722 exon16 c.G2143A p.E715K GCGCTTCACTGAG . 252 75 170 0 . 2 2 0 0 0 HIST1H1C 3006 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 26056096 26056096 + Silent SNP T T C novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . HIST1H1C-231 NM_005319 exon1 c.A561G p.K187K AGCACTTTTGGCA . 143 12 95 0 . 47 33 14 0 0 GRM4 2914 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 34059858 34059858 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . GRM4-525 NM_001256811 exon3 c.G538A p.A180T TGGAGGCGTAGCT . 182 83 128 2 . 0 0 0 0 0 SLC26A5 375611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 103050896 103050896 + Missense_Mutation SNP G G C novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . SLC26A5-91 NM_206883 exon7 c.C671G p.S224C AACATGGAGGTGA . 83 26 86 0 . 0 0 0 0 0 PLXNA4 91584 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 131887415 131887415 + Missense_Mutation SNP C C T rs201337636 TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . PLXNA4-91 NM_020911 exon12 c.G2576A p.R859H GTGATGCGGGGGT . 48 8 34 0 C|0.999;T|0.001 0 0 0 0 0 EIF4EBP1 1978 bcgsc.ca 37 8 37914734 37914734 + Missense_Mutation SNP G G A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . EIF4EBP1-846 NM_004095 exon2 c.G281A p.S94N AAGCCAGCCAGAG . 56 4 52 0 . 43 43 0 0 0 STAU2 27067 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 74464271 74464271 + Silent SNP A A G novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . STAU2-90 NM_001164380 exon13 c.T1506C p.Y502Y TGCTAAATATTCC . 143 61 152 0 . 96 40 56 0 0 OR13F1 138805 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 107267461 107267461 + Missense_Mutation SNP T T G novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . OR13F1-115 NM_001004485 exon1 c.T918G p.I306M GCTGATTAGAAAT . 44 18 69 0 . 0 0 0 0 0 SPTAN1 6709 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 131379924 131379924 + Missense_Mutation SNP A A G novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . SPTAN1-158 NM_001130438 exon42 c.A5363G p.K1788R GGGAGAAGAAGCT . 143 50 118 0 . 0 0 0 0 0 EHMT1 79813 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 140710514 140710514 + Missense_Mutation SNP G G A novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . EHMT1-154 NM_024757 exon23 c.G3374A p.R1125K GTCTCAGGTGAGA . 67 35 57 0 . 16 0 16 0 0 CSF2RA 1438 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 1407702 1407702 + Missense_Mutation SNP G G T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . CSF2RA-42 NM_172247 exon4 c.G394T p.D132Y AATGCGGATTTAA . 389 127 282 0 . 68 35 33 0 0 FRMPD4 9758 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 12708337 12708337 + Missense_Mutation SNP G G T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . FRMPD4-263 NM_014728 exon8 c.G705T p.E235D TCAAGAGAAGCTC . 118 99 63 1 . 0 0 0 0 0 NAA10 8260 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 153198018 153198018 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . NAA10-159 NM_001256119 exon4 c.G199A p.V67M GGGGCACATCATC . 87 32 51 0 . 152 89 62 1 0 PLXNA3 55558 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 153700940 153700940 + Missense_Mutation SNP C C T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . PLXNA3-132 NM_017514 exon33 c.C5528T p.T1843M TTCTCACGGCTCT . 205 178 137 0 . 0 0 0 0 0 FGGY 55277 hgsc.bcm.edu;bcgsc.ca 37 1 60019871 60019884 + Frame_Shift_Del DEL TCTGTGGAACGTCT TCTGTGGAACGTCT - novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 TCTGTGGAACGTCT TCTGTGGAACGTCT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . FGGY-69 NM_001113411 exon8 c.875_888del p.292_296del . . 157 48 236 0 . 0 0 0 0 0 ITGA6 3655 hgsc.bcm.edu 37 2 173352476 173352476 + Frame_Shift_Del DEL A A - novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . ITGA6-227 NM_000210 exon17 c.2265delA p.L755fs . . 73 14 81 0 . 0 0 0 0 0 SETD2 29072 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 47098859 47098859 + Frame_Shift_Del DEL G G - novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . SETD2-1273 NM_014159 exon15 c.6415delC p.Q2139fs . . 112 83 164 0 . 0 0 0 0 0 SETD2 29072 hgsc.bcm.edu 37 3 47098859 47098860 + Frame_Shift_Del DEL GC GC - novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 GC GC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . SETD2-1273 NM_014159 exon15 c.6414_6415del p.2138_2139del . . 114 48 163 0 . 0 0 0 0 0 ARMC8 25852 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 137964017 137964040 + In_Frame_Del DEL CGGAAGAAGGTGAGTCTGGGAGAG CGGAAGAAGGTGAGTCTGGGAGAG - novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 CGGAAGAAGGTGAGTCTGGGAGAG CGGAAGAAGGTGAGTCTGGGAGAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . ARMC8-90 NM_213654 exon13 c.1084_1107del p.362_369del . . 139 22 147 0 . 0 0 0 0 0 PDS5A 23244 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 39851206 39851213 + Frame_Shift_Del DEL CTTCATAA CTTCATAA - novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 CTTCATAA CTTCATAA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . . NM_001100399 exon27 c.3146_3153del p.1049_1051del . . 82 23 95 0 . 0 0 0 0 0 SERF1A 8293 hgsc.bcm.edu 37 5 70196698 70196698 + Frame_Shift_Del DEL T T - novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . SERF1A-68 NM_022968 exon1 c.2delT p.M1fs . . 307 48 119 0 . 0 0 0 0 0 PSIP1 11168 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 15468982 15468982 + Frame_Shift_Del DEL G G - novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . PSIP1-658 NM_001128217 exon13 c.1179delC p.H393fs . . 51 28 99 0 . 0 0 0 0 0 TRIM44 54765 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 35684955 35684956 + Frame_Shift_Ins INS - - T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . TRIM44-227 NM_017583 exon1 c.296_297insT p.S99fs . . 253 66 174 0 . 0 0 0 0 0 C17orf64 124773 broad.mit.edu 37 17 58499974 58499975 + Frame_Shift_Ins INS - - G novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . C17orf64-271 NM_181707 exon1 c.21_22insG p.Q7fs TGGGCAAGGGGGT . 196 6 166 0 . 0 0 0 0 0 SSFA2 6744 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 182765617 182765618 + Frame_Shift_Ins INS - - T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . SSFA2-153 NM_001130445 exon7 c.698_699insT p.N233fs . . 84 19 69 0 . 0 0 0 0 0 SENP5 205564 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 196612951 196612952 + Frame_Shift_Ins INS - - T novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . SENP5-659 NM_152699 exon2 c.899_900insT p.S300fs . . 94 46 72 0 . 0 0 0 0 0 ZNF814 730051 hgsc.bcm.edu 37 19 58385798 58385799 + Missense_Mutation DNP CC CC TT novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 CC CC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . . NM_001144989 exon3 c.G959A p.G320E CTTTTCCCAGTGT . 84.0 17.0 78.0 0.0 . 0 0 0 0 0 KLHL17 339451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 898747 898748 + Missense_Mutation DNP GG GG AA novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 GG GG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . KLHL17-90 NM_198317 exon8 c.G1219A p.E407K ACCGTGGAGTCCT . 177.0 124.0 166.0 1.0 . 0 0 0 0 0 NMUR2 56923 broad.mit.edu 37 5 151775087 151775088 + Missense_Mutation DNP GA GA AT novel TCGA-A4-A5Y1-01A-11D-A28G-10 TCGA-A4-A5Y1-11A-11D-A28G-10 GA GA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39eb3bc2-c190-47cb-b9c7-20278d7e1692 2eeacc32-d82b-4e45-908f-19cb21710b93 . NMUR2-526 NM_020167 exon3 c.T869A p.F290Y CTGAAGAAGAGTC . 459 9 372 0 . 0 0 0 0 0