Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
WDR65	149465	hgsc.bcm.edu;bcgsc.ca	37	1	43685098	43685098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	WDR65-91	NM_001195831	exon13	c.A2137G	p.M713V	TTAAAAATGGAGA	.	85	38	103	0	.	0	0	0	0	0
SPATA6	54558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	48918785	48918785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SPATA6-91	NM_019073	exon2	c.G70A	p.V24M	TAAGCACGACTCC	.	71	30	72	0	.	0	0	0	0	0
GTF2B	2959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	89352944	89352944	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	GTF2B-154	NM_001514	exon2	c.G124C	p.G42R	ACTCACCTACAAC	.	82	39	85	0	.	0	0	0	0	0
C1orf146	388649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	92707844	92707844	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	C1orf146-91	NM_001012425	exon3	c.A142C	p.I48L	GGATCAATTATAT	.	20	10	13	0	.	0	0	0	0	0
AMPD2	271	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110170816	110170816	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	AMPD2-292	NM_004037	exon10	c.C1354G	p.R452G	CAGGGCCGTGAAC	.	104	49	167	1	.	40	28	12	0	0
ZNF697	90874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	120165395	120165395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ZNF697-23	NM_001080470	exon3	c.C1571T	p.A524V	CAGCCCGCACACT	.	86	36	53	0	.	2	0	2	0	0
CREG1	8804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	167515417	167515417	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CREG1-186	NM_003851	exon3	c.A580T	p.I194L	TGGTTATATTCAA	.	105	46	128	0	.	143	81	62	0	0
MARC1	64757	hgsc.bcm.edu	37	1	220960439	220960439	+	Silent	SNP	G	G	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	.	NM_022746	exon1	c.G153T	p.L51L	GCGGCTGCTGCAG	.	25	10	3	0	.	0	0	0	0	0
FAM178A	55719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	102675796	102675796	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	.	NM_001136123	exon2	c.C181T	p.Q61X	TCAAAACAAGGTA	.	55	20	66	0	.	0	0	0	0	0
TDRD1	56165	broad.mit.edu;bcgsc.ca	37	10	115964520	115964520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TDRD1-90	NM_198795	exon10	c.G1165A	p.G389R	GCAGAAGGGAATT	.	79	36	87	2	.	0	0	0	0	0
WDR11	55717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	122665493	122665493	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	WDR11-226	NM_018117	exon27	c.T3397A	p.S1133T	CTCCTCTCTCTGG	.	122	48	115	0	.	111	45	66	0	0
TCIRG1	10312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67817430	67817430	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TCIRG1-227	NM_006019	exon17	c.A2015G	p.E672G	CCCAGGAGGAAAA	.	72	38	62	0	.	0	0	0	0	0
NAALAD2	10003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	89868775	89868775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	NAALAD2-92	NM_005467	exon2	c.A131G	p.H44R	GCTATCATCAAAG	.	58	10	30	0	.	0	0	0	0	0
DDX12P	440081	broad.mit.edu	37	12	9583320	9583320	+	RNA	SNP	T	T	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	.	.	.	.	.	ATCTGATAGGGCA	.	135	13	68	2	.	4	4	0	0	0
MFSD5	84975	broad.mit.edu	37	12	53647798	53647798	+	Silent	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	MFSD5-93	NM_001170790	exon2	c.C1500T	p.L500L	AGGGCTCCTTGTC	.	138	7	191	1	.	83	83	0	0	0
NT5DC3	51559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	104182695	104182695	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	NT5DC3-228	NM_001031701	exon10	c.C1022G	p.P341R	CGGAAAGGCCTAA	.	106	46	117	0	.	2	2	0	0	0
RGCC	28984	hgsc.bcm.edu	37	13	42031876	42031876	+	Silent	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	.	NM_014059	exon1	c.G33A	p.A11A	CCCCGCGGCCGCC	.	25	14	0	0	.	0	0	0	0	0
FAM194B	220081	hgsc.bcm.edu	37	13	46170728	46170728	+	Missense_Mutation	SNP	T	T	C	rs45625342		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	FAM194B-68	NM_182542	exon3	c.A413G	p.E138G	AGATACTCTTCCT	.	66	5	36	0	.	0	0	0	0	0
NKX2-1	7080	hgsc.bcm.edu	37	14	36988288	36988288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	NKX2-1-658	NM_001079668	exon2	c.G365T	p.G122V	ATGTTGCCCAGGT	.	26	13	5	1	.	0	0	0	0	0
ARID4A	5926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	58796735	58796735	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ARID4A-231	NM_002892	exon11	c.A754C	p.S252R	AAAGCAAGCATCT	.	151	66	171	0	.	3	1	2	0	0
TTC8	123016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	89338717	89338717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TTC8-90	NM_144596	exon13	c.C1268T	p.A423V	GGCTGGCTCTGGT	.	122	58	138	0	.	33	19	14	0	0
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	31342655	31342655	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TRPM1-94	NM_001252020	exon11	c.T1445A	p.V482E	TCCTCCACTTCCT	.	100	38	117	0	.	0	0	0	0	0
AQR	9716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	35189882	35189882	+	Silent	SNP	T	T	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	AQR-135	NM_014691	exon21	c.A2268C	p.G756G	CCCTTTTCCACTT	.	79	30	63	0	.	20	10	10	0	0
SMAD3	4088	broad.mit.edu	37	15	67473652	67473652	+	Silent	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SMAD3-904	NM_005902	exon6	c.C732T	p.V244V	GCGCGTCGGGGAG	.	92	3	102	0	.	20	20	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	6	6	0	0	T|0.007;C|0.993	4	0	4	0	0
PKD1	5310	ucsc.edu	37	16	2168072	2168072	+	Silent	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	PKD1-91	NM_000296	exon5	c.C921T	p.F307F	GTCTCCGAAGTCC	.	159	2	18	0	.	5	5	0	0	0
CDH11	1009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	64981793	64981793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CDH11-852	NM_001797	exon13	c.T2104C	p.Y702H	GCATGTACTGATA	.	223	117	106	0	.	15	15	0	0	0
RLTPR	146206	ucsc.edu;bcgsc.ca	37	16	67690142	67690142	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	RLTPR-67	NM_001013838	exon34	c.G3754C	p.D1252H	ATTATGGACAGTT	.	341	162	255	3	.	0	0	0	0	0
LCAT	3931	broad.mit.edu	37	16	67976298	67976298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	LCAT-44	NM_000229	exon5	c.G716T	p.G239V	ATGGAGCCACCCC	.	231	10	138	1	.	190	190	0	0	0
WDR16	146845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	9501596	9501596	+	Silent	SNP	C	C	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	WDR16-71	NM_145054	exon5	c.C582A	p.I194I	AAAAATCTGGCCA	.	54	14	31	0	.	0	0	0	0	0
TMEM99	147184	broad.mit.edu	37	17	38992526	38992526	+	Splice_Site	SNP	T	T	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TMEM99-91	.	.	.	.	GGTTTTTTGTGTG	.	13	5	11	0	.	0	0	0	0	0
KRTAP4-7	100132476	broad.mit.edu;ucsc.edu	37	17	39240627	39240627	+	Missense_Mutation	SNP	T	T	C	rs189343211		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	.	NM_033061	exon1	c.T169C	p.S57P	TGCCAGTCTGTGT	.	72	7	39	1	.	0	0	0	0	0
ACE	1636	broad.mit.edu	37	17	61566074	61566074	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ACE-94	NM_000789	exon16	c.C2371T	p.R791X	GGCTGGCGAGACA	.	112	4	80	0	.	6	6	0	0	0
SAP30BP	29115	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73702116	73702116	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SAP30BP-91	NM_013260	exon10	c.G689C	p.G230A	AAAAAGGCACCAC	.	60	24	80	1	.	238	166	72	0	0
MFSD11	79157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	74738356	74738356	+	Splice_Site	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	MFSD11-91	NM_001242534	exon6	c.437+1G>A	.	GTCTAGGTAATTA	.	180	10	120	0	.	0	0	0	0	0
TXNDC2	84203	hgsc.bcm.edu	37	18	9887074	9887074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TXNDC2-92	NM_001098529	exon2	c.G598A	p.E200K	TCAGAAGAAGCCA	.	114	7	117	0	.	0	0	0	0	0
CABLES1	91768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	20768825	20768825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CABLES1-522	NM_001100619	exon2	c.C869T	p.S290F	AGAGATCTTCCTT	.	24	7	29	0	.	13	4	9	0	0
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1041554	1041554	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ABCA7-98	NM_019112	exon3	c.A112T	p.I38F	TTCTTCATCCTGG	.	25	9	26	0	.	11	3	8	0	0
ADAMTSL5	339366	hgsc.bcm.edu	37	19	1506086	1506086	+	Silent	SNP	G	G	A	rs186786015		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ADAMTSL5-90	NM_213604	exon12	c.C1344T	p.A448A	GTAGCCGGCGTGG	.	42	20	1	0	G|0.999;A|0.000	36	17	18	1	0
EVI5L	115704	hgsc.bcm.edu	37	19	7927064	7927064	+	Silent	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	EVI5L-91	NM_001159944	exon15	c.C1701T	p.G567G	CGTGGGCGAGCTG	.	15	10	4	0	.	21	9	12	0	0
LPHN1	22859	broad.mit.edu	37	19	14262129	14262129	+	Silent	SNP	A	A	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	LPHN1-523	NM_001008701	exon24	c.T3981G	p.G1327G	GTCAGCACCCCCG	.	40	15	13	2	.	6	5	1	0	0
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	31768208	31768208	+	Missense_Mutation	SNP	C	C	T	rs201694059	alternate_allele	TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TSHZ3-232	NM_020856	exon2	c.G2491A	p.V831I	ATGATACGACGGC	.	199	81	199	0	C|0.999;A|0.001	0	0	0	0	0
ZNF181	339318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35231657	35231657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ZNF181-91	NM_001029997	exon4	c.T371C	p.I124T	AATATATAGAGAA	.	107	29	103	0	.	8	7	1	0	0
CATSPERG	57828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38850108	38850108	+	Splice_Site	SNP	A	A	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CATSPERG-92	NM_021185	exon14	c.1497-2A>T	.	CCCTGCAGCTCTA	.	69	33	88	0	.	0	0	0	0	0
SUPT5H	6829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39966780	39966780	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SUPT5H-94	NM_003169	exon28	c.G3084C	p.E1028D	CAGTGAGCACCTG	.	86	10	112	0	.	306	292	14	0	0
PPM1N	147699	broad.mit.edu	37	19	46002036	46002036	+	Silent	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	.	NM_001080401	exon1	c.C306T	p.L102L	CGTCCTCGACGGC	.	64	9	17	0	.	2	0	2	0	0
CCDC9	26093	hgsc.bcm.edu	37	19	47763935	47763935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CCDC9-90	NM_015603	exon5	c.G301A	p.G101S	CAGGGAGGCCGGG	.	7	6	0	0	.	23	8	15	0	0
GLTSCR1	29998	hgsc.bcm.edu	37	19	48205552	48205552	+	Silent	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	GLTSCR1-48	NM_015711	exon15	c.C4563T	p.P1521P	CGCGCCCTCGTAC	.	13	7	0	0	.	6	3	3	0	0
CEBPZ	10153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	37455042	37455042	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CEBPZ-91	NM_005760	exon2	c.A1294T	p.N432Y	TGATATTTGAGCG	.	113	37	74	0	.	52	35	17	0	0
CAMKMT	79823	hgsc.bcm.edu	37	2	44589184	44589184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CAMKMT-90	NM_024766	exon1	c.C38T	p.T13I	GCGAGACCGCGCG	.	62	31	2	0	.	10	6	4	0	0
GCC2	9648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	109087879	109087879	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	GCC2-91	NM_181453	exon6	c.T2094A	p.S698R	ACTCAGTTCAGAA	.	172	39	95	0	.	32	17	15	0	0
ORC4	5000	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	148695764	148695764	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ORC4-207	NM_002552	exon13	c.A1073T	p.Q358L	TTCCTTTGAACAA	.	156	8	141	0	.	58	52	6	0	0
PKP4	8502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	159459582	159459582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	PKP4-97	NM_001005476	exon4	c.C246A	p.S82R	CTTTAGCTCAACT	.	104	23	117	0	.	0	0	0	0	0
GPR155	151556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	175331330	175331330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	GPR155-91	NM_001033045	exon7	c.T1208C	p.L403S	TTACTCAAAAGAA	.	150	47	106	0	.	5	4	1	0	0
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	203972839	203972839	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	NBEAL1-92	NM_001114132	exon13	c.G1790A	p.W597X	GTGCTTGGTTTTG	.	121	71	117	0	.	1	0	1	0	0
C2orf62	375307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219222408	219222408	+	Silent	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	C2orf62-68	NM_198559	exon3	c.C270T	p.A90A	GCATGCCTCTAGC	.	73	37	60	0	.	45	11	34	0	0
OLIG1	116448	hgsc.bcm.edu	37	21	34442850	34442850	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	OLIG1-446	NM_138983	exon1	c.G298C	p.E100Q	GCCAAGGAGGAGC	.	22	13	0	0	.	0	0	0	0	0
KRTAP10-1	386677	hgsc.bcm.edu	37	21	45959197	45959197	+	Silent	SNP	G	G	A	rs200623181		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	KRTAP10-1-91	NM_198691	exon1	c.C837T	p.R279R	GGCCGGGCGGGAG	.	45	25	1	0	G|0.997;A|0.003	0	0	0	0	0
KRTAP10-3	386682	hgsc.bcm.edu;broad.mit.edu	37	21	45978023	45978023	+	Silent	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	KRTAP10-3-91	NM_198696	exon1	c.C576T	p.A192A	GCAGGAGGCCGGG	.	165	9	14	0	.	0	0	0	0	0
EIF3L	51386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38273745	38273745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	EIF3L-69	NM_016091	exon11	c.G1142A	p.R381H	CCATGCGTATTGA	.	198	77	260	1	.	1	1	0	0	0
ENTHD1	150350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	40283710	40283710	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ENTHD1-93	NM_152512	exon2	c.T43G	p.S15A	CATCTGAGTAATT	.	22	8	39	0	.	0	0	0	0	0
CENPM	79019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	42339699	42339699	+	Missense_Mutation	SNP	C	C	T	rs138744954		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CENPM-90	NM_024053	exon5	c.G317A	p.R106Q	CTCTCCCGCCCAG	.	94	37	138	0	C|1.000;T|0.000	0	0	0	0	0
MCAT	27349	hgsc.bcm.edu	37	22	43539309	43539309	+	Missense_Mutation	SNP	C	C	A	rs200527554		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	MCAT-91	NM_014507	exon1	c.G46T	p.A16S	AGCTGGCGCCCAA	.	6	6	0	0	.	9	2	7	0	0
LAMB2	3913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49161312	49161312	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	LAMB2-93	NM_002292	exon24	c.C3646G	p.Q1216E	ACTCCTGCGCCCG	.	84	57	72	0	.	300	102	198	0	0
CRYBG3	131544	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	97595925	97595925	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CRYBG3-68	NM_153605	exon4	c.A5887T	p.K1963X	CTAGACAAAAGAA	.	272	154	219	2	.	0	0	0	0	0
PARP15	165631	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122354765	122354765	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	PARP15-524	NM_001113523	exon12	c.C1855T	p.R619X	GTTGTGCGAGTAC	.	176	53	135	1	.	4	4	0	0	0
EHHADH	1962	ucsc.edu	37	3	184935956	184935956	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	EHHADH-93	NM_001966	exon5	c.A536T	p.E179V	GCTTCTTCAACCG	.	39	4	28	0	.	25	25	0	0	0
MUC4	4585	bcgsc.ca	37	3	195515038	195515038	+	Missense_Mutation	SNP	G	G	A	rs201206859		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	MUC4-90	NM_018406	exon2	c.C3413T	p.P1138L	GTGACAGGAAGAG	.	357	15	274	9	.	1	1	0	0	0
MUC4	4585	bcgsc.ca	37	3	195515134	195515134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	MUC4-90	NM_018406	exon2	c.C3317A	p.P1106H	GTGACAGGAAGAG	.	467	26	340	8	.	1	1	0	0	0
MAEA	10296	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1316285	1316285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	MAEA-91	NM_001017405	exon4	c.G573T	p.K191N	CCGGAAGATGAAG	.	105	44	105	1	.	0	0	0	0	0
SLIT2	9353	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	20535255	20535255	+	Silent	SNP	T	T	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SLIT2-521	NM_004787	exon18	c.T1749A	p.G583G	ATCTGGTGTAAAT	.	300	75	352	2	.	9	6	3	0	0
CCDC149	91050	broad.mit.edu	37	4	24810216	24810216	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CCDC149-68	NM_173463	exon13	c.T1385G	p.L462R	TCTTCCAGTTCTG	.	67	3	64	0	.	11	11	0	0	0
DSPP	1834	bcgsc.ca	37	4	88536614	88536614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	DSPP-90	NM_014208	exon5	c.A2800G	p.N934D	AACAGCAATAGCA	.	448	39	485	1	.	0	0	0	0	0
ANAPC10	10393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	145916549	145916549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ANAPC10-650	NM_001256709	exon7	c.C567A	p.F189L	CATCATGAAATCT	.	51	27	48	0	.	27	6	21	0	0
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	33658354	33658354	+	Silent	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ADAMTS12-232	NM_030955	exon7	c.T1125C	p.S375S	GTTACAACTGCGG	.	169	10	196	0	.	0	0	0	0	0
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	90281309	90281309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	GPR98-103	NM_032119	exon85	c.C18122T	p.S6041L	GCATGTCACAGAT	.	157	54	193	0	.	0	0	0	0	0
TMEM232	642987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	109904274	109904274	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	.	NM_001039763	exon11	c.A1329C	p.K443N	TGAAATTTTCACC	.	71	34	60	0	.	4	2	2	0	0
PHF15	23338	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	133895661	133895661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	PHF15-90	NM_015288	exon5	c.C453A	p.N151K	CATCAACTCGGAG	.	130	58	202	1	.	16	9	7	0	0
TRPC7	57113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	135561911	135561911	+	Silent	SNP	T	T	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	.	NM_020389	exon9	c.A2073T	p.R691R	TTTTGCTCGGGCG	.	96	47	108	0	.	1	1	0	0	0
HSPA9	3313	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	137903216	137903216	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	HSPA9-226	NM_004134	exon7	c.A644G	p.N215S	AGCACATTCAGTC	.	69	7	90	0	.	154	149	5	0	0
PCDHA2	56146	hgsc.bcm.edu	37	5	140176265	140176265	+	Silent	SNP	C	C	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	PCDHA2-94	NM_031495	exon1	c.C1716A	p.T572T	TGGCACCGCTGCT	.	177	13	7	0	.	3	2	1	0	0
DIAPH1	1729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140953451	140953451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	DIAPH1-91	NM_005219	exon16	c.C1966A	p.P656T	GCAAAGGAGGGGG	.	54	25	49	0	.	15	8	7	0	0
PCYOX1L	78991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	148747898	148747898	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	PCYOX1L-91	NM_024028	exon6	c.A1166T	p.Q389L	AGCCCCAGGAGGC	.	107	42	125	0	.	30	15	15	0	0
RARS	5917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	167937680	167937680	+	Nonsense_Mutation	SNP	G	G	T	rs148161788	alternate_allele	TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	RARS-93	NM_002887	exon12	c.G1441T	p.E481X	GAAAAAGAAAGAG	.	128	51	135	0	.	0	0	0	0	0
DDX41	51428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176943307	176943307	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	DDX41-226	NM_016222	exon3	c.C280G	p.L94V	CTTTAAGGTGCTG	.	84	36	102	0	.	147	75	72	0	0
DCDC2	51473	hgsc.bcm.edu	37	6	24357769	24357769	+	Silent	SNP	A	A	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	DCDC2-91	NM_001195610	exon2	c.T210A	p.T70T	GTGGCCAGTCCGC	.	74	4	70	0	.	88	88	0	0	0
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	40399589	40399589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	LRFN2-93	NM_020737	exon2	c.C1264A	p.P422T	GTTCCGGGGGGCT	.	56	23	56	0	.	0	0	0	0	0
MMS22L	253714	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	97634560	97634560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	MMS22L-92	NM_198468	exon15	c.G2046A	p.M682I	TTGATGCATACTC	.	124	44	125	1	.	0	0	0	0	0
BVES	11149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	105563684	105563684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	BVES-90	NM_001199563	exon7	c.C835T	p.H279Y	GCTGATGTTCCAG	.	97	32	95	0	.	3	0	3	0	0
ARPC1B	10095	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	98988630	98988630	+	Silent	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ARPC1B-90	NM_005720	exon6	c.A615G	p.V205V	CTGGGTACATGGC	.	98	56	93	1	.	927	333	592	1	1
FBXL13	222235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	102553614	102553614	+	Silent	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	FBXL13-226	NM_001111038	exon11	c.C927T	p.F309F	GTCTGTGAACCGT	.	169	38	170	0	.	3	0	3	0	0
LAMB1	3912	broad.mit.edu;bcgsc.ca	37	7	107599767	107599767	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	LAMB1-97	NM_002291	exon20	c.G2617C	p.A873P	CATCGGCGTGGCC	.	227	9	181	0	.	207	187	20	0	0
LAMB1	3912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	107605061	107605061	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	LAMB1-97	NM_002291	exon14	c.C1634G	p.P545R	TAACCAGGTTCCA	.	202	73	153	0	.	284	196	88	0	0
KEL	3792	broad.mit.edu;bcgsc.ca	37	7	142640932	142640932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	KEL-93	NM_000420	exon14	c.C1530A	p.S510R	GACACAGCTCAGG	.	201	8	207	1	.	5	5	0	0	0
CRH	1392	hgsc.bcm.edu	37	8	67089641	67089641	+	Silent	SNP	C	C	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CRH-90	NM_000756	exon2	c.G72A	p.A24A	CAGGAGCGCCCTG	.	16	10	0	0	.	0	0	0	0	0
FAM83H	286077	broad.mit.edu	37	8	144808646	144808646	+	Silent	SNP	T	T	C	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	FAM83H-92	NM_198488	exon5	c.A2985G	p.Q995Q	CTCGGGTTGGCCG	.	107	4	14	0	.	58	55	3	0	0
FAM47A	158724	bcgsc.ca	37	X	34148842	34148842	+	Silent	SNP	G	G	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	FAM47A-134	NM_203408	exon1	c.C1554T	p.R518R	CTCCGAGCGGAGA	.	28	5	26	0	.	0	0	0	0	0
SSX9	280660	bcgsc.ca	37	X	48161189	48161189	+	RNA	SNP	A	A	G	rs6609702		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SSX9-90	.	.	.	.	TCTGAGAACGTTC	.	268	8	261	4	A|0.600;G|0.400	0	0	0	0	0
HDAC6	10013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48676773	48676773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	HDAC6-230	NM_006044	exon22	c.A2141G	p.D714G	ATGCTGACTACCT	.	88	77	95	0	.	27	0	27	0	0
SERPINA7	6906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	105280775	105280775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SERPINA7-226	NM_000354	exon2	c.T275C	p.I92T	TCCACAATCTCAG	.	46	6	45	0	.	0	0	0	0	0
TENM1	10178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	123637524	123637524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	.	NM_001163278	exon19	c.C3331A	p.P1111T	AGTCAGGGCACGT	.	155	132	134	1	.	2	0	2	0	0
CD24	100133941	bcgsc.ca	37	Y	21154603	21154603	+	RNA	SNP	A	A	C	rs79788321		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	.	.	.	.	.	TCCCCTACGTCGG	.	37	34	35	0	.	1844	0	1843	0	1
OR5T2	219464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	56000572	56000573	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	OR5T2-70	NM_001004746	exon1	c.89_90del	p.30_30del	.	.	106	39	110	0	.	0	0	0	0	0
CDC42BPG	55561	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64603951	64603963	+	Frame_Shift_Del	DEL	CCAGCTGGGGGCC	CCAGCTGGGGGCC	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	CCAGCTGGGGGCC	CCAGCTGGGGGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CDC42BPG-528	NM_017525	exon12	c.1424_1436del	p.475_479del	.	.	62	10	99	0	.	0	0	0	0	0
TEKT5	146279	broad.mit.edu	37	16	10788448	10788448	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TEKT5-92	NM_144674	exon1	c.283delG	p.D95fs	ACTGGTCCCAGTC	.	102	7	35	0	.	0	0	0	0	0
SERPINF1	5176	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	1679947	1679953	+	Frame_Shift_Del	DEL	GAGAACT	GAGAACT	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	GAGAACT	GAGAACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SERPINF1-227	NM_002615	exon7	c.908_914del	p.303_305del	.	.	133	60	137	0	.	0	0	0	0	0
MST1	4485	broad.mit.edu	37	3	49723112	49723112	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	MST1-278	NM_020998	exon11	c.1304delA	p.N435fs	TCTGGGTTCCGGC	.	300	9	231	0	.	0	0	0	0	0
CITED2	10370	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	139694300	139694309	+	Frame_Shift_Del	DEL	CACACGAAGT	CACACGAAGT	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	CACACGAAGT	CACACGAAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CITED2-90	NM_001168389	exon2	c.788_797del	p.263_266del	.	.	57	15	89	0	.	0	0	0	0	0
ASAH1	427	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	17916973	17916973	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ASAH1-90	NM_004315	exon12	c.966delA	p.E322fs	.	.	66	25	77	0	.	0	0	0	0	0
STMN4	81551	broad.mit.edu	37	8	27097616	27097616	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	STMN4-154	NM_030795	exon6	c.463delC	p.Q155fs	CCTTTTGGATCAC	.	131	10	166	0	.	0	0	0	0	0
OPTN	10133	hgsc.bcm.edu;bcgsc.ca	37	10	13160980	13160981	+	Frame_Shift_Ins	INS	-	-	AAGGG	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	OPTN-70	NM_001008212	exon7	c.719_720insAAGGG	p.L240fs	.	.	172	39	206	0	.	0	0	0	0	0
FBXL15	79176	broad.mit.edu	37	10	104182716	104182717	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	FBXL15-226	NM_024326	exon4	c.869_870insG	p.A290fs	ATATGGCGGGCTT	.	104	9	53	0	.	0	0	0	0	0
NEB	4703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	152579988	152579989	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	NEB-145	NM_004543	exon9	c.625_626insT	p.E209_D210delinsX	.	.	120	67	72	0	.	0	0	0	0	0
SEC14L2	23541	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	30818390	30818391	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SEC14L2-90	NM_012429	exon12	c.1206_1207insA	p.P402fs	.	.	62	21	82	0	.	0	0	0	0	0
RENBP	5973	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	153200984	153200985	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	RENBP-132	NM_002910	exon10	c.1123_1124insA	p.E375fs	.	.	171	144	139	0	.	0	0	0	0	0