Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 DOCK7 85440 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 63119731 63119731 + Missense_Mutation SNP A A G novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . DOCK7-92 NM_001272002 exon3 c.T244C p.F82L GAGGAAATTCAAT . 85 27 83 0 . 0 0 0 0 0 PLEKHO1 51177 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 150131515 150131515 + Missense_Mutation SNP C C A novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . PLEKHO1-226 NM_016274 exon6 c.C1027A p.P343T CGGTCTCCGCCGG . 127 19 132 0 . 101 101 0 0 0 ENAH 55740 hgsc.bcm.edu 37 1 225707051 225707051 + Missense_Mutation SNP C C A rs140432837 byfrequency;alternate_allele TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . ENAH-516 NM_001008493 exon5 c.G651T p.E217D CTGCCGCTCCAGG . 142 14 143 0 C|1.000;T|0.000 5 5 0 0 0 ARHGAP21 57584 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 24873803 24873803 + Silent SNP T T C novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . ARHGAP21-235 NM_020824 exon26 c.A5415G p.G1805G GTGCCCTCCTAGT . 86 32 77 0 . 23 14 9 0 0 PIPSL 266971 ucsc.edu 37 10 95718760 95718760 + RNA SNP G G A novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . . . . . . GTCCATGGCTGAG . 301 1 284 0 . 189 0 189 0 0 MUC5B 727897 broad.mit.edu 37 11 1281625 1281625 + Splice_Site SNP T T G novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . . NM_002458 exon47 c.16966+2T>G . GGAGGGTAAGTGG . 116 11 175 10 . 0 0 0 0 0 KRTAP5-4 387267 hgsc.bcm.edu 37 11 1643082 1643082 + Missense_Mutation SNP T T C rs59610171 TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . . NM_001012709 exon1 c.A242G p.Y81C GAGCCATAGCCCC . 29 4 33 0 . 1 0 1 0 0 ARHGAP1 392 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 46702650 46702650 + Silent SNP G G A novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . ARHGAP1-227 NM_004308 exon7 c.C546T p.F182F CTGCCCGAACTTG . 58 5 106 0 . 0 0 0 0 0 AHNAK 79026 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 62296065 62296065 + Missense_Mutation SNP C C T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . AHNAK-109 NM_001620 exon5 c.G5824A p.V1942M CCGACACATCCAC . 188 14 194 0 . 6 6 0 0 0 PC 5091 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 66636384 66636384 + Missense_Mutation SNP T T C novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . PC-228 NM_000920 exon9 c.A955G p.K319E AGTGCTTGCCGTG . 190 65 336 1 . 1 1 0 0 0 MAML2 84441 hgsc.bcm.edu 37 11 95825248 95825248 + Silent SNP C C T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . MAML2-850 NM_032427 exon2 c.G1947A p.Q649Q CTGCTGCTGCTGC . 139 25 80 0 . 0 0 0 0 0 MAML2 84441 ucsc.edu 37 11 95825254 95825254 + Silent SNP C C T rs61749250 TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . MAML2-850 NM_032427 exon2 c.G1941A p.Q647Q CTGCTGCTGTTGT . 146 28 113 0 . 0 0 0 0 0 SLC6A12 6539 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 306024 306024 + Missense_Mutation SNP A A G novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . SLC6A12-91 NM_001122848 exon11 c.T1100C p.F367S TTGGGGAAGGCGA . 85 24 116 0 . 7 5 2 0 0 CACNA1C 775 bcgsc.ca 37 12 2794921 2794921 + Missense_Mutation SNP G G A rs71458011 TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . CACNA1C-34 NM_199460 exon47 c.G5842A p.E1948K GATGACGAAAATC . 175 20 139 7 G|0.500;A|0.500 0 0 0 0 0 R3HDM2 22864 broad.mit.edu 37 12 57648792 57648792 + Missense_Mutation SNP A A C novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . R3HDM2-92 NM_014925 exon22 c.T2695G p.W899G TGAGCCACTGGAT . 82 5 69 0 . 3 3 0 0 0 ALX1 8092 broad.mit.edu;bcgsc.ca 37 12 85680745 85680745 + Missense_Mutation SNP G G A novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . ALX1-24 NM_006982 exon3 c.G646A p.D216N AGGACTGACAGCT . 69 6 52 1 . 0 0 0 0 0 GALNT9 50614 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 132834320 132834320 + Silent SNP G G A novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . GALNT9-90 NM_001122636 exon5 c.C867T p.N289N GGCGGCGTTCGCA . 72 18 95 0 . 0 0 0 0 0 GJA3 2700 broad.mit.edu 37 13 20717168 20717168 + Missense_Mutation SNP G G A novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . GJA3-69 NM_021954 exon2 c.C260T p.T87M GTGGGCGTGGACA . 145 5 231 0 . 0 0 0 0 0 GPR12 2835 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 27332981 27332981 + Silent SNP C C T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . GPR12-90 NM_005288 exon2 c.G984A p.A328A CGAGCGCGCTCTC . 127 56 155 0 . 0 0 0 0 0 FRY 10129 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 13 32823745 32823745 + Missense_Mutation SNP G G T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . FRY-142 NM_023037 exon49 c.G7091T p.R2364L TCACCCGGAGCAC . 77 4 67 0 . 6 6 0 0 0 PROSER1 80209 broad.mit.edu 37 13 39600511 39600511 + Missense_Mutation SNP C C T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . . NM_025138 exon6 c.G383A p.G128D TTGCAGCCCCCCT . 13 4 17 0 . 0 0 0 0 0 PRPF39 55015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 45564665 45564665 + Missense_Mutation SNP G G A novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . PRPF39-70 NM_017922 exon2 c.G223A p.A75T ACAGAAGCAAATT . 55 23 52 0 . 4 0 4 0 0 ARG2 384 broad.mit.edu 37 14 68117524 68117524 + Missense_Mutation SNP G G T rs148319106 byfrequency;alternate_allele TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . ARG2-90 NM_001172 exon8 c.G952T p.V318L GTAGATGTGATTG . 147 4 180 0 G|0.999;A|0.001 9 9 0 0 0 TGM7 116179 broad.mit.edu 37 15 43571977 43571977 + Silent SNP C C A novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . TGM7-92 NM_052955 exon10 c.G1524T p.L508L CAGCAGCAGCTGC . 40 7 55 1 . 0 0 0 0 0 SIN3A 25942 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 75673957 75673957 + Silent SNP T T A novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . SIN3A-230 NM_001145358 exon18 c.A3285T p.A1095A TACCTCTGCTTCC . 170 77 152 0 . 0 0 0 0 0 SIN3A 25942 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 75673982 75673982 + Missense_Mutation SNP T T A novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . SIN3A-230 NM_001145358 exon18 c.A3260T p.E1087V GAATTCTCCTCTT . 173 75 169 0 . 1 1 0 0 0 CARHSP1 23589 bcgsc.ca 37 16 8949067 8949067 + Missense_Mutation SNP G G A novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . CARHSP1-90 NM_001042476 exon4 c.C398T p.P133L GTGCCTGGTGCCA . 179 6 230 0 . 273 273 0 0 0 FA2H 79152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 74750468 74750468 + Missense_Mutation SNP G G C novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . FA2H-90 NM_024306 exon6 c.C816G p.F272L AGGGGGGAAGACC . 39 16 34 0 . 0 0 0 0 0 WDR81 124997 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 1630052 1630052 + Missense_Mutation SNP C C T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . WDR81-91 NM_001163809 exon1 c.C1799T p.P600L TTGCCCCCGAGCC . 35 20 19 0 . 0 0 0 0 0 MYBBP1A 10514 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 4445767 4445767 + Missense_Mutation SNP G G T rs200492249 alternate_allele TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . MYBBP1A-92 NM_014520 exon22 c.C3079A p.R1027S GATGACGGGGCCG . 149 48 116 0 G|0.999;A|0.001 18 11 7 0 0 NDC80 10403 bcgsc.ca 37 18 2585121 2585121 + Missense_Mutation SNP G G T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . NDC80-91 NM_006101 exon7 c.G589T p.A197S CATACTGCCATGA . 55 4 43 0 . 0 0 0 0 0 SHC2 25759 ucsc.edu;bcgsc.ca 37 19 422299 422299 + Missense_Mutation SNP G G T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . SHC2-392 NM_012435 exon11 c.C1467A p.H489Q CCGGCCGTGGTAC . 32 4 72 0 . 18 18 0 0 0 MEF2BNB 729991 ucsc.edu 37 19 19293489 19293489 + Silent SNP G G A novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . . NM_001145784 exon4 c.C219T p.A73A CTTCACGGCGCTG . 39 4 58 2 . 0 0 0 0 0 ZNF880 400713 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 52877551 52877551 + Splice_Site SNP G G A novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . . NM_001145434 exon3 c.140-1G>A . TAAATAGGAATCT . 78 11 58 0 . 1 0 1 0 0 C2orf61 285051 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 47382353 47382353 + Missense_Mutation SNP A A G novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . C2orf61-68 NM_173649 exon1 c.T38C p.I13T TCCCTTATTGAGG . 100 31 118 0 . 0 0 0 0 0 ZNF2 7549 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 95847510 95847510 + Missense_Mutation SNP C C G novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . ZNF2-90 NM_021088 exon5 c.C937G p.P313A AGGAAGCCTTATG . 153 53 168 0 . 0 0 0 0 0 PGAP1 80055 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 197750195 197750195 + Missense_Mutation SNP G G T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . PGAP1-93 NM_024989 exon12 c.C1225A p.Q409K CCCCTTGCAGGCT . 71 5 105 0 . 0 0 0 0 0 EEF1B2 1933 broad.mit.edu 37 2 207025358 207025358 + Missense_Mutation SNP A A G novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . EEF1B2-227 NM_021121 exon3 c.A127G p.S43G GTGTCCAGCCCAC . 195 5 209 1 . 103 103 0 0 0 STK11IP 114790 broad.mit.edu;bcgsc.ca 37 2 220465972 220465972 + Missense_Mutation SNP C C T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . STK11IP-91 NM_052902 exon3 c.C110T p.S37F TCCTGTCTGGCTG . 108 7 124 1 . 0 0 0 0 0 FRG1B 284802 bcgsc.ca 37 20 29623219 29623219 + RNA SNP A A G rs34726194 TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . FRG1B-22 . . . . TCGACAATGGTCT . 917 54 812 13 . 25 25 0 0 0 PCK1 5105 broad.mit.edu 37 20 56140434 56140434 + Silent SNP C C T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . PCK1-227 NM_002591 exon10 c.C1443T p.A481A CTTTGCCATGCGG . 100 5 75 0 . 24 24 0 0 0 PFKFB4 5210 broad.mit.edu 37 3 48576038 48576038 + Silent SNP G G T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . PFKFB4-153 NM_004567 exon7 c.C525A p.G175G AGGGCTGCCCAGT . 105 6 136 1 . 1 1 0 0 0 RRP9 9136 broad.mit.edu 37 3 51968675 51968675 + Silent SNP G G A novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . RRP9-154 NM_004704 exon12 c.C1152T p.A384A GAGGAGGGCTGCC . 110 3 172 0 . 30 30 0 0 0 MFSD1 64747 broad.mit.edu 37 3 158539426 158539426 + Missense_Mutation SNP G G T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . MFSD1-90 NM_022736 exon10 c.G1051T p.A351S CAGGCAGCAAGTG . 102 4 68 1 . 1 1 0 0 0 TPRG1 285386 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 188925189 188925189 + Missense_Mutation SNP A A G novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . TPRG1-90 NM_198485 exon2 c.A16G p.S6G ATTGGGAGTTTTG . 149 23 132 0 . 0 0 0 0 0 MUC4 4585 broad.mit.edu;bcgsc.ca 37 3 195490958 195490958 + Missense_Mutation SNP G G A novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . MUC4-90 NM_018406 exon11 c.C14002T p.R4668W GGGGCCGCCTCTG . 210 10 330 0 . 0 0 0 0 0 UBA6 55236 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 68534339 68534339 + Silent SNP T T C novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . UBA6-90 NM_018227 exon9 c.A723G p.T241T TTGTCCTGTCTCC . 94 5 76 0 . 0 0 0 0 0 ASIC5 51802 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 156784757 156784757 + Missense_Mutation SNP G G A novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . . NM_017419 exon2 c.C190T p.L64F ACCAGAGCACCCT . 149 56 144 0 . 0 0 0 0 0 C6orf15 29113 broad.mit.edu 37 6 31079878 31079878 + Silent SNP G G T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . C6orf15-90 NM_014070 exon2 c.C258A p.G86G TGGGAAGCCATCT . 117 7 156 1 . 0 0 0 0 0 SYNGAP1 8831 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 33400480 33400480 + Missense_Mutation SNP C C T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . SYNGAP1-48 NM_006772 exon5 c.C406T p.R136W AGCCGACGGCTAA . 54 16 59 0 . 2 2 0 0 0 RRP36 88745 broad.mit.edu 37 6 42994982 42994982 + Nonsense_Mutation SNP C C T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . RRP36-90 NM_033112 exon5 c.C517T p.Q173X CTGCTTCAGCGAA . 73 4 89 0 . 0 0 0 0 0 HMGN3 9324 broad.mit.edu 37 6 79918284 79918284 + Silent SNP G G T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . HMGN3-226 NM_001201362 exon3 c.C76A p.R26R CAGACCGTCTTGT . 211 5 206 1 . 2 2 0 0 0 LPA 4018 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 161026202 161026202 + Missense_Mutation SNP A A G novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . LPA-74 NM_005577 exon19 c.T2821C p.Y941H CGTGGTAGCACTC . 55 32 66 0 . 0 0 0 0 0 TAX1BP1 8887 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 27856559 27856559 + Nonsense_Mutation SNP A A T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . TAX1BP1-153 NM_006024 exon15 c.A1987T p.R663X CCTGTCAGAGTCC . 74 44 31 0 . 17 14 3 0 0 ZNF713 349075 bcgsc.ca 37 7 55991337 55991337 + Missense_Mutation SNP G G T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . ZNF713-92 NM_182633 exon3 c.G213T p.L71F GCAGTTGGAGCTA . 99 5 98 0 . 2 2 0 0 0 GIMAP8 155038 broad.mit.edu 37 7 150174500 150174500 + Missense_Mutation SNP G G T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . GIMAP8-95 NM_175571 exon5 c.G1630T p.A544S AAAACAGCTGTGG . 100 6 75 1 . 5 5 0 0 0 CHD7 55636 broad.mit.edu 37 8 61775123 61775123 + Missense_Mutation SNP C C T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . CHD7-141 NM_017780 exon37 c.C7988T p.A2663V CTATGGCGCCTCC . 69 3 74 0 . 3 3 0 0 0 LAMC3 10319 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 133948708 133948708 + Missense_Mutation SNP G G A novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . LAMC3-93 NM_006059 exon20 c.G3494A p.S1165N CCAGGAGGTGAGT . 17 7 55 0 . 0 0 0 0 0 TSPYL2 64061 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 53114044 53114044 + Silent SNP C C A novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . TSPYL2-130 NM_022117 exon3 c.C993A p.R331R CAACCGCTCAGGT . 60 56 75 0 . 0 0 0 0 0 STAG2 10735 bcgsc.ca 37 X 123185066 123185066 + Silent SNP C C T novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . STAG2-134 NM_001042749 exon12 c.C1113T p.F371F TCGGTTCAAGGTT . 50 4 53 0 . 0 0 0 0 0 LAMTOR5 10542 hgsc.bcm.edu;bcgsc.ca 37 1 110950347 110950347 + Frame_Shift_Del DEL C C - novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . . NM_006402 exon1 c.142delG p.A48fs . . 216 42 297 0 . 0 0 0 0 0 PIGB 9488 broad.mit.edu 37 15 55631503 55631503 + Frame_Shift_Del DEL T T - novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . PIGB-226 NM_004855 exon7 c.833delT p.I278fs ATCGTATTTTTTT . 96 7 101 0 . 0 0 0 0 0 HOXD8 3234 hgsc.bcm.edu;bcgsc.ca 37 2 176996164 176996165 + Frame_Shift_Ins INS - - CCCTAGCCCT novel TCGA-B1-A47N-01A-11D-A25F-10 TCGA-B1-A47N-10A-01D-A25F-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71 2041c373-06a2-4ba8-b9f8-3c11c313e0db . HOXD8-90 NM_019558 exon2 c.697_698insCCCTAGCCCT p.A233fs . . 53 14 88 0 . 0 0 0 0 0