Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ATP13A2	23400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	17318334	17318334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ATP13A2-93	NM_022089	exon20	c.C2146A	p.L716M	GGCTCAGGTCTCC	.	64	18	91	0	.	45	24	21	0	0
RAP1GAP	5909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	21936724	21936724	+	Silent	SNP	G	G	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	RAP1GAP-245	NM_001145658	exon14	c.C1080G	p.V360V	CTGGAAGACCACA	.	191	52	156	0	.	81	40	41	0	0
RPS8	6202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	45242407	45242407	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	RPS8-91	NM_001012	exon3	c.C172G	p.L58V	CGTGCCCTGAGGT	.	30	13	38	0	.	2119	1158	957	0	4
SSBP3	23648	bcgsc.ca	37	1	54707864	54707864	+	Silent	SNP	G	G	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	SSBP3-90	NM_145716	exon11	c.C738A	p.P246P	GGGCCAGGGTCTG	.	49	4	62	0	.	17	17	0	0	0
C1orf180	439927	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	85097342	85097342	+	RNA	SNP	G	G	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	.	.	.	.	.	GGTCGGGTCCTGG	.	60	25	68	0	.	0	0	0	0	0
AMPD1	270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	115221050	115221050	+	Silent	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	AMPD1-293	NM_000036	exon8	c.T1095C	p.Y365Y	GGTGCTATAGACC	.	86	30	76	0	.	0	0	0	0	0
RPTN	126638	broad.mit.edu	37	1	152128065	152128065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	RPTN-68	NM_001122965	exon3	c.G1510A	p.G504R	CTTGTCCGTCTGG	.	90	5	98	0	.	0	0	0	0	0
DDR2	4921	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	162724591	162724591	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	DDR2-1464	NM_001014796	exon6	c.T363G	p.N121K	GATCAATTACAGT	.	78	28	95	1	.	1	1	0	0	0
HMCN1	83872	broad.mit.edu	37	1	185953350	185953350	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	HMCN1-113	NM_031935	exon19	c.T2840G	p.I947S	TCCATATTGAAAG	.	67	3	87	0	.	0	0	0	0	0
GJD4	219770	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	35896876	35896876	+	Silent	SNP	C	C	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	GJD4-155	NM_153368	exon2	c.C435A	p.I145I	CATCATCCACCTC	.	23	8	19	0	.	0	0	0	0	0
ADAMTS14	140766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	72513573	72513573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ADAMTS14-232	NM_139155	exon19	c.G2756T	p.W919L	AGGAGTGGGGTGC	.	39	8	43	0	.	0	0	0	0	0
C10orf11	83938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	77818509	77818509	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	C10orf11-90	NM_032024	exon4	c.A400G	p.R134G	TTGGTCAGAGGAG	.	89	13	105	0	.	49	24	25	0	0
C10orf12	26148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	98744160	98744160	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	C10orf12-92	NM_015652	exon1	c.A3013C	p.N1005H	TATTCCAATATTC	.	60	21	49	0	.	3	1	2	0	0
ERLIN1	10613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101935785	101935785	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	.	NM_006459	exon5	c.C347G	p.T116S	ATTAAGGTCTTGT	.	97	35	95	0	.	26	13	13	0	0
FANK1	92565	bcgsc.ca	37	10	127585212	127585212	+	Missense_Mutation	SNP	A	A	T	rs145156460		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	FANK1-91	NM_145235	exon1	c.A1T	p.M1L	CCGACCATGGAGC	.	150	9	144	1	.	0	0	0	0	0
DOCK1	1793	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	128830577	128830577	+	Silent	SNP	T	T	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	DOCK1-698	NM_001380	exon18	c.T1842A	p.T614T	ACTGACTCAGAAC	.	96	36	98	1	.	0	0	0	0	0
TTC40	54777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	134733640	134733640	+	Silent	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	.	NM_001200049	exon14	c.G1653A	p.K551K	CCACGCCTTCGCA	.	54	18	43	0	.	1	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1092973	1092973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	MUC2-90	NM_002457	exon30	c.C4792T	p.P1598S	CCAACACCCACCG	.	74	4	55	2	.	0	0	0	0	0
KRTAP5-5	439915	bcgsc.ca	37	11	1651127	1651127	+	Silent	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	KRTAP5-5-23	NM_001001480	exon1	c.C57T	p.S19S	TGGCTCCGGCTGT	.	217	14	172	3	.	0	0	0	0	0
HIPK3	10114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	33374883	33374883	+	Silent	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	HIPK3-336	NM_005734	exon17	c.T3417C	p.S1139S	AGCCTCTCCGTGT	.	112	31	125	0	.	66	34	32	0	0
ATG13	9776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	46666907	46666907	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ATG13-68	NM_001142673	exon4	c.C88T	p.Q30X	ATTGTCCAGGCTC	.	91	5	78	0	.	47	45	2	0	0
PCNXL3	399909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65397996	65397996	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	PCNXL3-46	NM_032223	exon27	c.A4391C	p.Y1464S	AGGGCTATAGCAT	.	122	41	135	0	.	17	10	7	0	0
MRE11A	4361	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	94225958	94225958	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	MRE11A-722	NM_005591	exon2	c.G10T	p.A4S	CATCTGCAGTACT	.	72	7	57	0	.	1	1	0	0	0
ASB8	140461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48543736	48543736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ASB8-226	NM_024095	exon4	c.G280A	p.A94T	TCTCTGCTGCATA	.	83	26	59	0	.	52	30	22	0	0
FAM186A	121006	broad.mit.edu	37	12	50747256	50747256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	FAM186A-68	NM_001145475	exon4	c.A3359G	p.E1120G	AGGATCTCCAGGG	.	64	5	52	4	.	0	0	0	0	0
PARP4	143	ucsc.edu	37	13	25020900	25020900	+	Splice_Site	SNP	C	C	T	rs1802322		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	PARP4-94	NM_006437	exon28	c.3286-1G>A	.	AGTTGCCTGAAAT	.	133	1	170	0	.	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	24	3	35	0	.	15	15	0	0	0
SERPINA12	145264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	94964196	94964196	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	SERPINA12-310	NM_173850	exon3	c.T539G	p.F180C	CTGATAAAGTCAT	.	82	39	130	0	.	0	0	0	0	0
RASGRP1	10125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	38798102	38798102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	RASGRP1-697	NM_001128602	exon10	c.A1262G	p.Y421C	TCAGTGTAGTAAA	.	68	25	68	0	.	7	3	4	0	0
DISP2	85455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40660678	40660678	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	DISP2-92	NM_033510	exon8	c.C2365G	p.P789A	CTGGACCCTCGTA	.	66	19	59	0	.	0	0	0	0	0
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42005518	42005518	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	MGA-522	NM_001080541	exon9	c.G3254C	p.R1085T	TGAAAAGAAAAGT	.	80	24	106	0	.	2	1	1	0	0
ALPK3	57538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	85400827	85400827	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ALPK3-337	NM_020778	exon6	c.A3464T	p.D1155V	GCTGTGACCCTGG	.	62	19	64	0	.	49	26	23	0	0
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	1268594	1268594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	CACNA1H-67	NM_021098	exon33	c.C5830A	p.H1944N	GCGCCCCACCCCC	.	91	28	87	0	.	2	2	0	0	0
BFAR	51283	broad.mit.edu	37	16	14738464	14738464	+	Silent	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	BFAR-92	NM_016561	exon2	c.C261T	p.L87L	TCTCCTCAGGTAA	.	32	10	33	0	.	0	0	0	0	0
CLEC19A	728276	hgsc.bcm.edu;bcgsc.ca	37	16	19320374	19320374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	.	NM_001256720	exon5	c.T530C	p.V177A	CCTTTGTCTGCAA	.	51	6	55	0	.	0	0	0	0	0
ZKSCAN2	342357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	25266603	25266603	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ZKSCAN2-138	NM_001012981	exon2	c.G510C	p.E170D	AGGTTCCTCCCGA	.	46	12	43	0	.	0	0	0	0	0
CCDC79	283847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	66804098	66804098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	.	NM_001136505	exon14	c.G1387A	p.D463N	CCTCATCTTCTGC	.	107	40	100	0	.	0	0	0	0	0
PKD1L3	342372	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	71969289	71969289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	PKD1L3-68	.	.	.	.	GTGCCATGTTTTT	.	86	34	82	0	.	0	0	0	0	0
CHMP1A	5119	ucsc.edu	37	16	89713674	89713674	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	.	NM_001083314	exon4	c.G298T	p.E100X	GACCTTCTGCAGG	.	51	2	42	0	.	138	120	18	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	TP53-70225	NM_000546	exon6	c.A578C	p.H193P	ATAAGATGCTGAG	.	123	29	120	1	.	18	8	9	0	1
KRTAP4-7	100132476	broad.mit.edu	37	17	39240627	39240627	+	Missense_Mutation	SNP	T	T	C	rs189343211		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	.	NM_033061	exon1	c.T169C	p.S57P	TGCCAGTCTGTGT	.	67	9	40	1	.	0	0	0	0	0
BRCA1	672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	41203099	41203099	+	Silent	SNP	G	G	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	BRCA1-3415	NM_007300	exon21	c.C5376T	p.P1792P	GGTGAAGGGCCCA	.	63	24	53	0	.	4	2	2	0	0
HEATR6	63897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	58121036	58121036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	HEATR6-227	NM_022070	exon20	c.C3434A	p.P1145Q	CCAGTTGGTGCCT	.	207	49	130	0	.	18	15	3	0	0
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	65162707	65162707	+	Silent	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	HELZ-92	NM_014877	exon15	c.A1782G	p.Q594Q	ATTTAATTGAAAC	.	117	9	85	0	.	12	9	3	0	0
FSCN2	25794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79496379	79496379	+	Silent	SNP	G	G	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	.	NM_001077182	exon1	c.G822A	p.R274R	TGTGCGGCAAGGT	.	123	73	83	0	.	0	0	0	0	0
PCYT2	5833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79865647	79865647	+	Splice_Site	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	PCYT2-68	NM_001256435	exon6	c.258+2T>C	.	CGACTCACCTGGC	.	52	14	46	0	.	0	0	0	0	0
TXNDC2	84203	broad.mit.edu	37	18	9887670	9887670	+	Silent	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	TXNDC2-92	NM_001098529	exon2	c.A1194G	p.P398P	CATCCCACCCAAG	.	128	9	122	4	.	0	0	0	0	0
TXNDC2	84203	broad.mit.edu	37	18	9887681	9887681	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	TXNDC2-92	NM_001098529	exon2	c.T1205G	p.I402S	AGGAGATTGACAT	.	121	4	118	2	.	0	0	0	0	0
KCNG2	26251	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	77659162	77659162	+	Silent	SNP	G	G	A	rs140841838		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	KCNG2-90	NM_012283	exon2	c.G747A	p.A249A	GCGCGCGCCACTC	.	26	6	32	0	G|1.000;A|0.000	0	0	0	0	0
ICAM1	3383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10395839	10395839	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ICAM1-91	NM_000201	exon7	c.T1475A	p.I492K	CAGTCATAATGGG	.	83	29	67	0	.	108	59	49	0	0
PLEKHG2	64857	hgsc.bcm.edu;broad.mit.edu	37	19	39913652	39913652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	PLEKHG2-274	NM_022835	exon18	c.G1958A	p.G653D	CCGAAGGTTCTCG	.	87	5	80	0	.	3	3	0	0	0
CLASRP	11129	broad.mit.edu	37	19	45571284	45571284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	CLASRP-154	NM_007056	exon15	c.C1679T	p.A560V	AACCTGCCGCTGG	.	193	4	193	0	.	0	0	0	0	0
TRPM4	54795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49674876	49674876	+	Silent	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	TRPM4-91	NM_001195227	exon8	c.C900T	p.L300L	TCTCCTCGTGGCT	.	72	23	66	0	.	40	19	21	0	0
ZNF175	7728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52091298	52091298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ZNF175-90	NM_007147	exon5	c.T1714C	p.S572P	TCTAAGTCTCAAT	.	68	20	63	0	.	4	3	1	0	0
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1805513	1805513	+	Silent	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	MYT1L-95	NM_015025	exon23	c.A3225G	p.E1075E	ATTGGATTCATTT	.	76	22	69	0	.	0	0	0	0	0
SMC6	79677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	17896324	17896324	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	SMC6-292	NM_001142286	exon16	c.A1534T	p.I512F	GATGAATGCAAGC	.	66	28	70	0	.	0	0	0	0	0
RHOB	388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	20647312	20647312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	RHOB-848	NM_004040	exon1	c.A86G	p.E29G	AGGACGAGTTCCC	.	85	26	66	0	.	135	92	43	0	0
SLC5A6	8884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27427730	27427730	+	Silent	SNP	G	G	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	SLC5A6-92	NM_021095	exon8	c.C804G	p.L268L	TAAGGAGAGCATC	.	30	10	24	0	.	25	19	6	0	0
INO80B	83444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	74684908	74684908	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	INO80B-226	NM_031288	exon5	c.T988A	p.C330S	GCACTCTGTAGTC	.	25	8	21	0	.	10	6	4	0	0
RPIA	22934	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	89037541	89037541	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	RPIA-91	NM_144563	exon8	c.T786G	p.F262L	GAAGTTTGACCGG	.	114	9	92	0	.	21	19	2	0	0
FER1L5	90342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	97368368	97368368	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	FER1L5-23	NM_001113382	exon47	c.A5395C	p.K1799Q	ATGCAGAAGACAG	.	64	24	56	0	.	0	0	0	0	0
LONRF2	164832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	100903452	100903452	+	Missense_Mutation	SNP	G	G	A	rs182810197		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	LONRF2-154	NM_198461	exon11	c.C1994T	p.A665V	AGAGACGCGAACC	.	112	8	113	0	G|0.999;A|0.000	0	0	0	0	0
AMER3	205147	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	131520234	131520234	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	.	NM_152698	exon2	c.C589T	p.R197X	GGGCGGCGAAGCA	.	34	4	33	0	.	0	0	0	0	0
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	168108259	168108259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	XIRP2-104	NM_152381	exon9	c.C10357T	p.H3453Y	TTCAAGCATGCCC	.	148	59	158	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179577514	179577514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	TTN-636	NM_001267550	exon94	c.G27238A	p.D9080N	CTACATCGAACAA	.	74	20	56	0	.	0	0	0	0	0
FASTKD2	22868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	207655323	207655323	+	Silent	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	FASTKD2-118	NM_001136193	exon11	c.T1926C	p.S642S	CAGATCTGCTTAT	.	43	14	64	0	.	76	38	38	0	0
LRRFIP1	9208	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	238666100	238666100	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	LRRFIP1-153	NM_001137550	exon17	c.A1133T	p.E378V	CTCAGGAAATCCG	.	221	66	270	0	.	0	0	0	0	0
BRWD1	54014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	40665927	40665927	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	BRWD1-94	NM_018963	exon8	c.C641A	p.S214X	TGTGTTGACCAAA	.	90	32	104	0	.	0	0	0	0	0
COL18A1	80781	hgsc.bcm.edu	37	21	46924434	46924434	+	Splice_Site	SNP	A	A	C	rs28696990		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	COL18A1-90	NM_130445	exon35	c.2825-2A>C	.	CCCCCCAGGCCCC	.	29	12	7	0	.	0	0	0	0	0
SSTR3	6753	broad.mit.edu	37	22	37602594	37602594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	SSTR3-522	NM_001051	exon2	c.T1249C	p.Y417H	ACAGGTAGCTGAT	.	16	3	20	0	.	0	0	0	0	0
ZKSCAN7	55888	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	44612087	44612087	+	Silent	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	.	NM_018651	exon6	c.T1485C	p.Y495Y	ACCTTATGAATGC	.	91	9	88	0	.	3	3	0	0	0
VPRBP	9730	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	51452313	51452313	+	Splice_Site	SNP	T	T	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	VPRBP-92	NM_001171904	exon18	c.3442-2A>C	.	TAAATCTTTAGAG	.	70	6	82	0	.	0	0	0	0	0
FLNB	2317	broad.mit.edu	37	3	58121740	58121740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	FLNB-593	NM_001164317	exon29	c.A4799G	p.H1600R	TTGTCCATGACAA	.	139	4	175	0	.	165	152	13	0	0
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	154858036	154858036	+	Silent	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	MME-516	NM_007287	exon10	c.A912G	p.T304T	GATGACATTGGCC	.	324	109	293	0	.	20	10	10	0	0
MUC4	4585	broad.mit.edu	37	3	195511694	195511694	+	Missense_Mutation	SNP	C	C	G	rs71617313		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	MUC4-90	NM_018406	exon2	c.G6757C	p.D2253H	TGGTGTCACCTGT	.	160	5	124	0	C|1.000;|0.000	0	0	0	0	0
AFAP1	60312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	7811366	7811366	+	Silent	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	AFAP1-90	NM_001134647	exon9	c.A1029G	p.S343S	CTCAGCTGAGGAG	.	55	18	50	0	.	24	10	14	0	0
GUF1	60558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	44688034	44688034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	GUF1-91	NM_021927	exon7	c.T728C	p.I243T	AAAGAATCCCCCC	.	42	11	40	0	.	0	0	0	0	0
PKD2	5311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	88996109	88996109	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	PKD2-91	NM_000297	exon14	c.G2668C	p.E890Q	GTGGCCGAGGTCA	.	87	18	113	0	.	0	0	0	0	0
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	13839483	13839483	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	DNAH5-182	NM_001369	exon35	c.T5864G	p.I1955R	GGAGTTATTACAA	.	55	19	60	0	.	2	1	1	0	0
AMACR	23600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	33998825	33998825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	AMACR-90	NM_203382	exon3	c.T499C	p.Y167H	AGTCGTATAGAAA	.	106	34	135	0	.	331	147	184	0	0
ADAMTS6	11174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	64766709	64766709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ADAMTS6-226	NM_197941	exon3	c.G358A	p.G120R	GGGGTCCATCTTT	.	84	22	77	0	.	0	0	0	0	0
PCDHGA5	56110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140745640	140745640	+	Silent	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	PCDHGA5-35	NM_032054	exon1	c.C1743T	p.S581S	TCGCTCCGCAGAA	.	104	35	96	0	.	0	0	0	0	0
UBTD2	92181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	171661228	171661228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	UBTD2-90	NM_152277	exon2	c.G205A	p.E69K	AAATCTCTTTCCG	.	93	32	100	0	.	24	12	12	0	0
RGS14	10636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176798989	176798989	+	Silent	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	RGS14-226	NM_006480	exon15	c.C1614T	p.P538P	AGGGCCCAGCTCC	.	44	18	60	0	.	209	92	116	0	1
HIST1H2BJ	8970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	27100264	27100264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	HIST1H2BJ-90	NM_021058	exon1	c.C266T	p.T89I	GTGATGGTCGAGC	.	33	12	62	0	.	51	51	0	0	0
KCNK16	83795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	39285639	39285639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	KCNK16-229	NM_001135106	exon3	c.C418A	p.L140I	GGTTGAGGAAGAT	.	60	7	67	0	.	0	0	0	0	0
PRIM2	5558	broad.mit.edu;bcgsc.ca	37	6	57467163	57467163	+	Silent	SNP	G	G	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	PRIM2-227	.	.	.	.	TTGCCTGAAGATT	.	146	6	123	0	.	0	0	0	0	0
PRSS35	167681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	84233613	84233613	+	Silent	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	PRSS35-91	NM_153362	exon2	c.C453T	p.S151S	GCTTTCCACGGGC	.	115	40	129	0	.	0	0	0	0	0
ENPP3	5169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	132059234	132059234	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ENPP3-95	NM_005021	exon23	c.A2231C	p.N744T	GAGTAAATGTGGT	.	78	29	91	0	.	12	7	5	0	0
SNX9	51429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	158358486	158358486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	SNX9-226	NM_016224	exon15	c.C1464A	p.F488L	CCATTTCCTGATG	.	80	20	79	0	.	101	54	46	0	1
GCK	2645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44185276	44185276	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	GCK-416	NM_033507	exon9	c.G1076C	p.R359P	GAGGGTCGCAGCC	.	70	27	60	0	.	0	0	0	0	0
POM121C	100101267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	75070316	75070316	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	.	NM_001099415	exon5	c.T143G	p.L48R	GCACTCAGTACAG	.	138	33	146	0	.	46	30	16	0	0
ZAN	7455	ucsc.edu	37	7	100349991	100349991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ZAN-142	.	.	.	.	ACCATCTCCCCAG	.	142	34	149	27	.	0	0	0	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138394418	138394418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ATP6V0A4-91	NM_130841	exon20	c.C2380A	p.L794M	TGATCAGAAGGAT	.	163	6	155	0	.	0	0	0	0	0
DPP6	1804	broad.mit.edu	37	7	153750140	153750140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	DPP6-652	NM_130797	exon1	c.G235A	p.E79K	GGTGACGAGGAGG	.	19	5	23	0	.	0	0	0	0	0
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	2020508	2020508	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	MYOM2-95	NM_003970	exon9	c.G877C	p.E293Q	GAAGGCGAGACGG	.	29	9	37	0	.	0	0	0	0	0
LOXL2	4017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	23198538	23198538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	LOXL2-272	NM_002318	exon4	c.C710T	p.P237L	TCCCCAGGGAAGC	.	45	15	45	0	.	0	0	0	0	0
EXOSC4	54512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145134932	145134932	+	Silent	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	EXOSC4-90	NM_019037	exon2	c.C258T	p.R86R	TGAGCGCAAGCGA	.	118	40	86	0	.	33	17	16	0	0
SLC39A4	55630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145640398	145640398	+	Missense_Mutation	SNP	G	G	T	rs200044971	alternate_allele	TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	SLC39A4-90	NM_130849	exon4	c.C764A	p.P255H	ATGAGGGGCACAG	.	38	15	32	0	G|0.998;A|0.002	0	0	0	0	0
TTC39B	158219	broad.mit.edu	37	9	15190552	15190552	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	TTC39B-187	NM_001168340	exon11	c.G1105C	p.G369R	TCTTACCAAGTAT	.	64	5	73	0	.	0	0	0	0	0
CCDC171	203238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	15729747	15729747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	.	NM_173550	exon16	c.T2000C	p.L667P	AGGAACTAGAGCT	.	120	35	101	0	.	1	1	0	0	0
TLN1	7094	broad.mit.edu;bcgsc.ca	37	9	35698339	35698339	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	TLN1-609	NM_006289	exon55	c.A7352C	p.E2451A	ATTGCCTCCGAGT	.	48	4	50	0	.	174	162	12	0	0
NPR2	4882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35792786	35792786	+	Silent	SNP	T	T	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	NPR2-335	NM_003995	exon1	c.T381C	p.S127S	GGCCTCTGGTTTT	.	70	14	67	0	.	13	8	5	0	0
OR1N2	138882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	125315955	125315955	+	Silent	SNP	C	C	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	OR1N2-72	NM_001004457	exon1	c.C507T	p.T169T	GCTAACCAACTGT	.	48	19	44	0	.	0	0	0	0	0
MED27	9442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	134889753	134889753	+	Silent	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	MED27-69	NM_001253881	exon3	c.T450C	p.A150A	GGGCTGAGCCTTT	.	80	12	134	0	.	14	6	8	0	0
IL1RAPL1	11141	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	29973429	29973429	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	IL1RAPL1-134	NM_014271	exon11	c.A1583C	p.K528T	CCCTGAAGCACAC	.	127	61	192	1	.	0	0	0	0	0
ERCC6L	54821	broad.mit.edu;bcgsc.ca	37	X	71427693	71427693	+	Silent	SNP	G	G	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ERCC6L-93	NM_017669	exon2	c.C924A	p.A308A	TCCCAAGGCTTTT	.	149	6	222	0	.	0	0	0	0	0
TCEAL4	79921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	102841991	102841991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	TCEAL4-130	NM_001006935	exon3	c.A388G	p.T130A	AGAAAAACTAATA	.	166	74	259	0	.	163	18	145	0	0
H2BFM	286436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	103294650	103294650	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	H2BFM-109	NM_001164416	exon1	c.A107T	p.Q36L	AGAAGCAGAAGAG	.	92	44	131	0	.	0	0	0	0	0
DDX26B	203522	broad.mit.edu	37	X	134706893	134706893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	DDX26B-226	NM_182540	exon11	c.G1441T	p.A481S	GAAACTGCACTTA	.	218	4	354	0	.	8	8	0	0	0
F8	2157	broad.mit.edu	37	X	154159037	154159037	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	F8-182	NM_000132	exon14	c.T3028G	p.F1010V	CTTTGAATAAGGC	.	75	4	115	0	.	0	0	0	0	0
CYP4X1	260293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	47489659	47489659	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	CYP4X1-92	NM_178033	exon1	c.170delA	p.H57fs	.	.	79	25	77	0	.	0	0	0	0	0
PVRL1	5818	broad.mit.edu	37	11	119545966	119545968	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	PVRL1-90	NM_002855	exon5	c.904_906del	p.302_302del	TCCCTTGAAGAAG	.	113	7	99	0	.	0	0	0	0	0
GALNT6	11226	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	51758036	51758036	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	GALNT6-92	NM_007210	exon6	c.918delT	p.F306fs	.	.	110	35	98	0	.	0	0	0	0	0
ARHGAP5	394	hgsc.bcm.edu;bcgsc.ca	37	14	32560648	32560648	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ARHGAP5-94	NM_001173	exon2	c.773delA	p.Y258fs	.	.	167	85	279	0	.	0	0	0	0	0
RGS6	9628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	72939649	72939649	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	RGS6-227	NM_001204424	exon9	c.606delC	p.V202fs	.	.	150	70	197	0	.	0	0	0	0	0
CEP152	22995	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	49074426	49074426	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	CEP152-70	NM_014985	exon11	c.1323delG	p.G441fs	.	.	30	10	27	0	.	0	0	0	0	0
STARD3	10948	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	37814678	37814685	+	Frame_Shift_Del	DEL	TGGCTACC	TGGCTACC	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	TGGCTACC	TGGCTACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	STARD3-90	NM_006804	exon6	c.450_457del	p.150_153del	.	.	50	14	46	0	.	0	0	0	0	0
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	13418985	13418985	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	CACNA1A-67	NM_001127221	exon14	c.1865delT	p.F622fs	.	.	126	42	137	0	.	0	0	0	0	0
ZNF826P	664701	hgsc.bcm.edu	37	19	20578766	20578768	+	RNA	DEL	TGA	TGA	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	.	.	.	.	.	.	.	78	15	77	0	.	0	0	0	0	0
SMEK2	57223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	55806886	55806886	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	SMEK2-228	NM_001122964	exon9	c.1397delT	p.F466fs	.	.	67	21	78	0	.	0	0	0	0	0
SLC25A12	8604	broad.mit.edu;bcgsc.ca	37	2	172700922	172700937	+	Frame_Shift_Del	DEL	CGGTTATGCCCAAAAT	CGGTTATGCCCAAAAT	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	CGGTTATGCCCAAAAT	CGGTTATGCCCAAAAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	SLC25A12-90	NM_003705	exon5	c.407_422del	p.136_141del	TTCTTCCGGTTAT	.	105	13	111	0	.	0	0	0	0	0
NFATC2	4773	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	50051812	50051813	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	NFATC2-92	NM_012340	exon8	c.1944_1945del	p.648_649del	.	.	84	25	69	0	.	0	0	0	0	0
SCIN	85477	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	12680013	12680013	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	SCIN-24	NM_001112706	exon11	c.1452delT	p.S484fs	.	.	51	17	59	0	.	0	0	0	0	0
POU6F2	11281	broad.mit.edu;bcgsc.ca	37	7	39504216	39504216	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	POU6F2-90	NM_007252	exon11	c.2007delA	p.L669fs	ACGCTTAAAACAG	.	42	9	72	0	.	0	0	0	0	0
NPR2	4882	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	35800822	35800822	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	NPR2-335	NM_003995	exon6	c.1335delC	p.D445fs	.	.	82	21	60	0	.	0	0	0	0	0
CSF3R	1441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	36939407	36939408	+	In_Frame_Ins	INS	-	-	GTC	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	CSF3R-515	NM_156039	exon5	c.443_444insGAC	p.P148delinsRP	.	.	76	25	79	0	.	0	0	0	0	0
RFPL3	10738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	32754194	32754195	+	Missense_Mutation	DNP	TA	TA	AT	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	RFPL3-91	NM_006604	exon2	c.A50T	p.Y46I	CAGACTATCTGGA	.	150.0	40.0	134.0	0.0	.	0	0	0	0	0