Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SLC2A1	6513	ucsc.edu;bcgsc.ca	37	1	43394677	43394677	+	Silent	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SLC2A1-94	NM_006516	exon8	c.C1000A	p.R334R	GGGTCCGCCGGCC	.	41	4	31	0	.	19	19	0	0	0
HIPK1	204851	broad.mit.edu	37	1	114483094	114483094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	HIPK1-361	NM_152696	exon2	c.G89T	p.G30V	CCTCTGGCTGGGA	.	93	4	85	0	.	4	4	0	0	0
DENND4B	9909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153916546	153916546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	DENND4B-69	NM_014856	exon2	c.T305C	p.L102P	TCAACGAGGGGGG	.	72	17	109	0	.	0	0	0	0	0
THBS3	7059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155175049	155175049	+	Silent	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	THBS3-222	NM_007112	exon3	c.G345A	p.A115A	CAGGCCCGCTTGC	.	55	13	66	0	.	15	10	5	0	0
CADM3	57863	broad.mit.edu	37	1	159166790	159166790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	CADM3-92	NM_021189	exon8	c.G994T	p.G332C	ACCTACGGCTGCA	.	107	4	120	0	.	1	1	0	0	0
SHCBP1L	81626	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	182922005	182922005	+	Silent	SNP	C	C	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SHCBP1L-91	NM_030933	exon1	c.G264C	p.A88A	CTCCGCCGCCGCC	.	43	18	35	0	.	0	0	0	0	0
F13B	2165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	197020002	197020002	+	Silent	SNP	T	T	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	F13B-92	NM_001994	exon10	c.A1563G	p.K521K	CATTCCTTTAGAT	.	68	27	102	0	.	0	0	0	0	0
PPP1R15B	84919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204379052	204379052	+	Silent	SNP	A	A	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PPP1R15B-652	NM_032833	exon1	c.T1488C	p.I496I	AGTCTGAATTGTT	.	72	23	81	0	.	16	7	9	0	0
PARP1	142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	226570817	226570817	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PARP1-727	NM_001618	exon8	c.A1079T	p.E360V	CTGGTTTCTGGGG	.	96	40	142	0	.	14	7	7	0	0
ARID4B	51742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	235345203	235345203	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ARID4B-228	NM_016374	exon20	c.T3031A	p.F1011I	TTGGAAATTCTGC	.	77	24	104	0	.	12	3	9	0	0
FMN2	56776	hgsc.bcm.edu	37	1	240371139	240371139	+	Silent	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	FMN2-145	NM_020066	exon5	c.C3027T	p.P1009P	CATACCCCCTCCT	.	81	5	87	0	.	0	0	0	0	0
RHOBTB1	9886	broad.mit.edu;bcgsc.ca	37	10	62637691	62637691	+	Silent	SNP	G	G	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	RHOBTB1-228	NM_014836	exon8	c.C1701T	p.C567C	TGGCAGGCAAAAT	.	153	6	143	0	.	53	53	0	0	0
MUC2	4583	broad.mit.edu	37	11	1093344	1093344	+	Silent	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	MUC2-90	NM_002457	exon30	c.G5163T	p.P1721P	AACCCCGACACCC	.	68	5	70	1	.	0	0	0	0	0
DAK	26007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	61111339	61111339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	DAK-115	NM_015533	exon12	c.A994G	p.T332A	GAAACCACTGCAG	.	53	16	44	0	.	0	0	0	0	0
CCDC87	55231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66359427	66359427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	CCDC87-92	NM_018219	exon1	c.G1060A	p.A354T	CCTCAGCCACGAT	.	69	29	54	0	.	0	0	0	0	0
ANKRD13D	338692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67058950	67058950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ANKRD13D-91	NM_207354	exon4	c.C355A	p.P119T	TAGGCCCCCGATT	.	36	10	54	0	.	2	2	0	0	0
PITPNM1	9600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	67267651	67267651	+	Silent	SNP	G	G	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PITPNM1-227	NM_001130848	exon6	c.C882T	p.P294P	GCCTGGGGGGGCC	.	23	11	13	0	.	23	14	9	0	0
LRP6	4040	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12303827	12303827	+	Silent	SNP	G	G	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	LRP6-661	NM_002336	exon13	c.C2937G	p.L979L	CCAATAGAGTTGC	.	126	35	154	2	.	0	0	0	0	0
CERS5	91012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	50529605	50529605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	.	NM_147190	exon8	c.A782G	p.N261S	GCATAATTGGCCA	.	87	20	107	0	.	20	10	10	0	0
PTPRR	5801	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	71139777	71139777	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PTPRR-652	NM_002849	exon6	c.A828T	p.L276F	TGGCTGTAATGTG	.	128	36	144	1	.	1	0	1	0	0
SIRT4	23409	bcgsc.ca	37	12	120750518	120750518	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SIRT4-226	NM_012240	exon3	c.G757C	p.A253P	AAAGAAGCCGACT	.	104	28	146	0	.	1	1	0	0	0
GSX1	219409	hgsc.bcm.edu	37	13	28367053	28367053	+	Silent	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	GSX1-69	NM_145657	exon1	c.C226T	p.L76L	CCCGCGCTGCCTC	.	16	4	11	0	.	0	0	0	0	0
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	35758158	35758158	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	NBEA-144	NM_015678	exon30	c.T4877G	p.F1626C	ATGGATTCCTTGC	.	102	32	89	0	.	1	1	0	0	0
GPR137C	283554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	53099007	53099007	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	GPR137C-68	NM_001099652	exon4	c.T847A	p.W283R	TATGGCTGGGATA	.	126	24	166	0	.	0	0	0	0	0
SRP14	6727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40331316	40331316	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SRP14-514	NM_003134	exon1	c.T2C	p.M1T	AACACCATCGCGG	.	71	8	68	0	.	887	791	94	2	0
ZFYVE19	84936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41099608	41099608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ZFYVE19-91	NM_032850	exon1	c.A122G	p.Y41C	GCGCGTACAGGTC	.	155	43	127	0	.	20	14	6	0	0
MFAP1	4236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	44105507	44105507	+	Silent	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	MFAP1-226	NM_005926	exon5	c.G666A	p.Q222Q	CTCCTTCTGTTTC	.	74	23	74	0	.	55	31	24	0	0
SECISBP2L	9728	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	49304926	49304926	+	Silent	SNP	A	A	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SECISBP2L-136	NM_001193489	exon12	c.T1650A	p.S550S	GTCCACAGAATTA	.	146	34	205	1	.	7	4	3	0	0
PIF1	80119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65114469	65114469	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PIF1-227	NM_025049	exon4	c.T813A	p.F271L	ACCTGCAAAGGCA	.	45	10	48	0	.	0	0	0	0	0
NEO1	4756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	73581573	73581573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	NEO1-116	NM_001172623	exon25	c.C3736A	p.P1246T	CAGCCACCCCAGC	.	73	32	70	0	.	0	0	0	0	0
PML	5371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	74325643	74325643	+	Silent	SNP	G	G	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PML-1083	NM_033244	exon6	c.G1545A	p.K515K	CTCCAAGGCAGTC	.	85	21	92	0	.	46	28	18	0	0
SLC28A1	9154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	85476453	85476453	+	Silent	SNP	G	G	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SLC28A1-93	NM_004213	exon13	c.G1161A	p.P387P	CTACCCGGAGGTG	.	56	17	76	0	.	19	12	7	0	0
ZNF597	146434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3487293	3487293	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ZNF597-90	NM_152457	exon4	c.T406A	p.L136I	TTCCTAAATATTC	.	208	123	201	0	.	3	0	3	0	0
ZNF646	9726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31092685	31092685	+	Silent	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ZNF646-153	NM_014699	exon2	c.C5040T	p.T1680T	CTGCACCCAGTGC	.	112	19	92	0	.	12	8	4	0	0
PRSS36	146547	broad.mit.edu	37	16	31154780	31154780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PRSS36-91	NM_001258291	exon8	c.C983A	p.A328D	CGCGGGGCCTTCC	.	79	8	59	0	.	0	0	0	0	0
ITGAM	3684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31335987	31335987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ITGAM-226	NM_001145808	exon18	c.C2176A	p.P726T	GAGGACCCAGTGA	.	140	17	109	0	.	5	5	0	0	0
CLEC18A	348174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	69988283	69988283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	CLEC18A-68	NM_001271197	exon4	c.T263C	p.L88P	CAGCCCTCTGTGG	.	396	181	309	1	.	3	0	3	0	0
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72984405	72984405	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ZFHX3-72	NM_006885	exon3	c.T3179G	p.V1060G	GAGTTGACCGTGT	.	72	37	59	0	.	2	0	2	0	0
JPH3	57338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	87678517	87678517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	JPH3-92	NM_020655	exon2	c.G1036A	p.G346S	GTCGGCGGCAAGC	.	71	29	47	0	.	0	0	0	0	0
KIF18B	146909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	43009571	43009571	+	Silent	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	KIF18B-70	NM_001264573	exon10	c.G1278A	p.Q426Q	GCAGGGCTGGCTG	.	51	8	33	0	.	0	0	0	0	0
TLK2	11011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	60663585	60663585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	TLK2-464	NM_006852	exon16	c.C1458A	p.H486Q	TTACCACAAGTAA	.	639	311	737	1	.	0	0	0	0	0
LPIN2	9663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	2939488	2939488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	LPIN2-227	NM_014646	exon6	c.A812G	p.E271G	GTGGACTCTGGGA	.	42	16	42	0	.	0	0	0	0	0
CCDC178	374864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	30992013	30992013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	.	NM_001105528	exon2	c.G40A	p.D14N	GATCATCTCTAGT	.	432	150	552	1	.	0	0	0	0	0
PTPRS	5802	bcgsc.ca	37	19	5214700	5214700	+	Silent	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PTPRS-357	NM_002850	exon29	c.C4366A	p.R1456R	GACACCGGTAGCC	.	59	4	56	0	.	0	0	0	0	0
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8183905	8183905	+	Silent	SNP	G	G	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	FBN3-100	NM_032447	exon25	c.C3213T	p.D1071D	GTCCACGTCTGAA	.	28	12	32	0	.	0	0	0	0	0
PRDX2	7001	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	12911694	12911694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PRDX2-90	NM_181738	exon3	c.A293G	p.K98R	GTGAGCTTAGCTG	.	76	22	99	0	.	0	0	0	0	0
LSM14A	26065	broad.mit.edu	37	19	34710315	34710315	+	Silent	SNP	T	T	G	rs201741862		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	LSM14A-91	NM_001114093	exon7	c.T801G	p.A267A	TTCAGCTCCAAGG	.	112	4	147	0	T|0.999;G|0.001	20	20	0	0	0
CLIP3	25999	broad.mit.edu	37	19	36523200	36523200	+	Silent	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	CLIP3-94	NM_001199570	exon1	c.G60A	p.E20E	CTCCTCCTCTTCT	.	101	3	99	0	.	1	1	0	0	0
ZNF576	79177	broad.mit.edu	37	19	44103092	44103092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ZNF576-90	NM_001145347	exon3	c.G195T	p.K65N	CCAGAAGCTGCAG	.	68	4	88	0	.	10	10	0	0	0
PVR	5817	broad.mit.edu;bcgsc.ca	37	19	45162149	45162149	+	Silent	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PVR-90	NM_006505	exon6	c.C1131T	p.H377H	TTGGCACTGTCAT	.	79	6	77	0	.	30	28	2	0	0
FBXO46	23403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46215777	46215777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	FBXO46-159	NM_001080469	exon2	c.T977C	p.L326P	GCCAGCAGGAACT	.	96	27	74	0	.	8	6	2	0	0
ARID5A	10865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	97215160	97215160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ARID5A-226	NM_212481	exon3	c.C223A	p.P75T	CACACGCCCATCG	.	127	72	111	0	.	5	4	1	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179431535	179431535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	TTN-636	NM_001267550	exon326	c.A79324G	p.T26442A	AATCTGTAATGCG	.	60	42	58	0	.	0	0	0	0	0
DEFB118	117285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	29960794	29960794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	DEFB118-94	NM_054112	exon2	c.G193T	p.V65F	AGGCGAGTTCCTG	.	109	30	144	0	.	0	0	0	0	0
TPX2	22974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	30388879	30388879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	TPX2-290	NM_012112	exon18	c.G2240T	p.C747F	TCCACTGCTAAAC	.	67	23	103	0	.	1	0	1	0	0
SUSD2	56241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24579518	24579518	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SUSD2-91	NM_019601	exon3	c.T343A	p.C115S	GTGCACTGTGTGT	.	46	19	54	0	.	0	0	0	0	0
PIM3	415116	broad.mit.edu	37	22	50355280	50355280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PIM3-521	NM_001001852	exon4	c.T437C	p.L146P	AGCCGCTGGCGCG	.	35	11	31	0	.	3	2	1	0	0
PPARG	5468	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	12447397	12447397	+	Silent	SNP	G	G	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PPARG-1043	NM_015869	exon5	c.G636C	p.R212R	TGGGCGGATGCCA	.	83	5	62	0	.	49	46	3	0	0
DAG1	1605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49547996	49547996	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	DAG1-92	NM_001177642	exon3	c.T29C	p.L10P	CGCTGCTGCTGCC	.	60	13	48	0	.	0	0	0	0	0
DNAH1	25981	broad.mit.edu;bcgsc.ca	37	3	52361913	52361913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	DNAH1-67	NM_015512	exon6	c.G754A	p.D252N	AATGAGGACTTTG	.	161	6	143	0	.	3	3	0	0	0
MBNL1	4154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	152163262	152163262	+	Silent	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	MBNL1-91	NM_207292	exon5	c.C741T	p.I247I	CAAGATCAAGGCT	.	145	37	118	0	.	10	3	7	0	0
USP13	8975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	179462840	179462840	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	USP13-659	NM_003940	exon13	c.T1544A	p.I515N	AACTGATCGCTTA	.	158	65	117	0	.	0	0	0	0	0
MUC4	4585	broad.mit.edu	37	3	195508983	195508983	+	Silent	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	MUC4-90	NM_018406	exon2	c.C9468A	p.T3156T	AGTGTCGGTGACA	.	102	3	90	0	.	2	1	0	1	0
DLG1	1739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	196888577	196888577	+	Silent	SNP	A	A	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	DLG1-118	NM_001098424	exon6	c.T516A	p.T172T	AGGGACAGTGGGA	.	398	99	381	0	.	20	17	3	0	0
CLNK	116449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	10522421	10522421	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	CLNK-23	NM_052964	exon15	c.A766C	p.N256H	CTCTGTTTTGCAC	.	104	35	137	0	.	0	0	0	0	0
USP46	64854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	53492228	53492228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	USP46-637	NM_022832	exon4	c.A518G	p.Q173R	GTTCCCTGAAAAA	.	202	64	224	0	.	4	1	3	0	0
EXOC1	55763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	56759888	56759888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	EXOC1-950	NM_018261	exon15	c.T1895C	p.L632P	CTTTCCTAAGTAC	.	121	40	141	0	.	29	18	11	0	0
CDKL2	8999	bcgsc.ca	37	4	76521462	76521462	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	CDKL2-454	NM_003948	exon10	c.C1385A	p.S462X	ATGCCTGATGGGG	.	101	5	132	0	.	14	14	0	0	0
FAT1	2195	broad.mit.edu	37	4	187541450	187541450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	FAT1-34	NM_005245	exon10	c.G6290T	p.G2097V	ACATGGCCCACCT	.	134	5	131	2	.	12	12	0	0	0
ZNF474	133923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	121487756	121487756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ZNF474-90	NM_207317	exon2	c.C71A	p.T24N	AACCCACTTTCCT	.	98	25	140	0	.	0	0	0	0	0
NKX2-5	1482	broad.mit.edu	37	5	172659726	172659726	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	NKX2-5-90	NM_004387	exon2	c.A821C	p.Y274S	GCGGGGTAAGCGG	.	181	40	136	21	.	0	0	0	0	0
NKX2-5	1482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	172660100	172660100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	NKX2-5-90	NM_004387	exon2	c.G447T	p.Q149H	ATAGACCTGCGCC	.	74	22	60	0	.	0	0	0	0	0
FGFR4	2264	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	176520385	176520385	+	Silent	SNP	A	A	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	FGFR4-1460	NM_022963	exon8	c.A1110G	p.R370R	AGGCAGAACCAAG	.	87	37	97	0	.	11	2	9	0	0
MUC21	394263	broad.mit.edu	37	6	30954813	30954813	+	Silent	SNP	T	T	C	rs9262371		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	MUC21-92	NM_001010909	exon2	c.T861C	p.N287N	CACCAATTCTGAG	.	152	8	126	0	T|0.967;C|0.033	0	0	0	0	0
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	38863980	38863980	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	DNAH8-615	NM_001206927	exon60	c.A8919C	p.E2973D	GTTTGAAGTACCC	.	100	23	143	0	.	0	0	0	0	0
GCLC	2729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	53380907	53380907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	GCLC-515	NM_001498	exon4	c.G560A	p.S187N	ACTCACCTGAAGC	.	65	15	88	0	.	0	0	0	0	0
GCLC	2729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	53380911	53380911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	GCLC-515	NM_001498	exon4	c.T556C	p.F186L	ACCTGAAGCGAGG	.	67	16	89	0	.	0	0	0	0	0
FAM135A	57579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	71236101	71236101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	FAM135A-90	NM_001162529	exon13	c.A3314G	p.Y1105C	CAGATTATTCAGC	.	159	48	186	0	.	9	4	5	0	0
PSMB1	5689	broad.mit.edu	37	6	170852793	170852793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PSMB1-91	NM_002793	exon4	c.C329A	p.A110D	GTCATGGCCTTAT	.	75	7	94	2	.	341	337	2	0	2
FAM20C	56975	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	193541	193541	+	Silent	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	.	NM_020223	exon1	c.C342T	p.A114A	CGCGGCCGAGCCG	.	40	23	21	0	.	3	2	1	0	0
FAM20C	56975	hgsc.bcm.edu;broad.mit.edu	37	7	193561	193561	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	.	NM_020223	exon1	c.T362A	p.L121X	GCGCCTTGCGGGG	.	26	14	13	0	.	5	2	3	0	0
ZNF853	54753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6661545	6661545	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	.	NM_017560	exon3	c.A923T	p.Q308L	AACTGCAGCCTCC	.	93	23	65	0	.	3	3	0	0	0
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	11582721	11582721	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	THSD7A-71	NM_015204	exon5	c.T1477G	p.L493V	TGCATAATTTTAA	.	166	75	170	0	.	1	1	0	0	0
TMED4	222068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44621390	44621390	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	TMED4-90	NM_182547	exon2	c.A193C	p.K65Q	CCTCCTTCTGCTT	.	115	49	108	0	.	68	31	37	0	0
FLNC	2318	broad.mit.edu	37	7	128489441	128489441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	FLNC-141	NM_001127487	exon30	c.G5008T	p.A1670S	GTGGATGCCAAGG	.	100	3	71	0	.	23	23	0	0	0
XRCC2	7516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	152345944	152345944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	XRCC2-1084	NM_005431	exon3	c.C626A	p.P209H	TGAGAAGGTTCTT	.	90	17	78	0	.	0	0	0	0	0
WDR67	93594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	124154514	124154514	+	Missense_Mutation	SNP	A	A	T	rs144810574	byfrequency;alternate_allele	TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	WDR67-226	NM_145647	exon19	c.A2653T	p.N885Y	AAAGAAAATTTGG	.	349	107	405	1	A|0.999;C|0.001	1	1	0	0	0
FAM49B	51571	broad.mit.edu;bcgsc.ca	37	8	130866576	130866576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	FAM49B-90	NM_016623	exon7	c.C452A	p.A151D	TGTATGGCAGGAT	.	92	5	130	0	.	49	49	0	0	0
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	139707081	139707081	+	Silent	SNP	C	C	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	COL22A1-103	NM_152888	exon33	c.G2634T	p.L878L	CCCAGGCAGGCCT	.	54	16	69	0	.	0	0	0	0	0
SCRIB	23513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144892982	144892982	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SCRIB-228	NM_015356	exon12	c.T1278A	p.D426E	CCCAGCATCCTCT	.	21	6	28	0	.	0	0	0	0	0
KIAA2026	158358	broad.mit.edu;bcgsc.ca	37	9	6007447	6007447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	KIAA2026-92	NM_001017969	exon1	c.A341G	p.E114G	GCCACCTCCTCCT	.	54	19	38	2	.	0	0	0	0	0
PBX3	5090	ucsc.edu;bcgsc.ca	37	9	128723051	128723051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PBX3-91	NM_006195	exon6	c.C932T	p.T311M	CAAAGACGGCCGT	.	164	39	182	2	.	7	6	1	0	0
RABL6	55684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139734263	139734263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	.	NM_001173988	exon13	c.G1879A	p.D627N	GACTCGGACCTCT	.	49	18	33	0	.	59	36	23	0	0
RAI2	10742	broad.mit.edu	37	X	17819166	17819166	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	RAI2-131	NM_001172739	exon3	c.A965C	p.K322T	ACTGACTTCATGG	.	67	4	64	0	.	55	51	4	0	0
SNX12	29934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	70280928	70280928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SNX12-226	NM_001256185	exon5	c.C427A	p.H143N	ACATGTGTAGGCA	.	47	32	47	0	.	61	7	54	0	0
BRWD3	254065	bcgsc.ca	37	X	79932816	79932816	+	Silent	SNP	G	G	T	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	BRWD3-134	NM_153252	exon41	c.C4701A	p.P1567P	TGTCCGGGGCTCT	.	45	4	54	0	.	5	5	0	0	0
TENM1	10178	bcgsc.ca	37	X	123515037	123515037	+	Silent	SNP	T	T	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	.	NM_001163278	exon32	c.A7548C	p.G2516G	CTTCCCTCCTTCA	.	27	22	31	1	.	4	0	4	0	0
SLC9A6	10479	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135098843	135098843	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SLC9A6-131	NM_001042537	exon10	c.T1276A	p.F426I	TTCATCTTCTCCT	.	70	41	93	1	.	7	0	7	0	0
C1orf112	55732	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	169798424	169798424	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	C1orf112-90	NM_018186	exon13	c.1148delT	p.V383fs	.	.	111	29	143	0	.	0	0	0	0	0
CCSAP	126731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	229461075	229461076	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	.	NM_145257	exon4	c.719_720del	p.240_240del	.	.	101	28	125	0	.	0	0	0	0	0
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	89692845	89692845	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PTEN-17735	NM_000314	exon5	c.329delA	p.Q110fs	.	.	224	59	229	0	.	0	0	0	0	0
SIRT4	23409	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120750516	120750517	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SIRT4-226	NM_012240	exon3	c.755_756del	p.252_252del	.	.	104	29	146	0	.	0	0	0	0	0
SIRT4	23409	hgsc.bcm.edu	37	12	120750516	120750518	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SIRT4-226	NM_012240	exon3	c.755_757del	p.252_253del	.	.	105	20	149	0	.	0	0	0	0	0
KLHL41	10324	broad.mit.edu;bcgsc.ca	37	2	170382094	170382096	+	Frame_Shift_Del	DEL	GGT	GGT	-	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	GGT	GGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	.	NM_006063	exon6	c.1710_1711del	p.570_571del	CCATCAGGTATGA	.	68	8	105	0	.	0	0	0	0	0
KLHL41	10324	broad.mit.edu;bcgsc.ca	37	2	170382098	170382107	+	Frame_Shift_Del	DEL	TGAAGATGAT	TGAAGATGAT	-	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	TGAAGATGAT	TGAAGATGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	.	NM_006063	exon6	c.1713_1722del	p.571_574del	CAGGTATGAAGAT	.	68	8	107	0	.	0	0	0	0	0
LIMD1	8994	hgsc.bcm.edu;broad.mit.edu	37	3	45714309	45714327	+	Frame_Shift_Del	DEL	ACAAGTAAGAAGGGATGGG	ACAAGTAAGAAGGGATGGG	-	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	ACAAGTAAGAAGGGATGGG	ACAAGTAAGAAGGGATGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	LIMD1-279	NM_014240	exon5	c.1769_1772del	p.590_591del	.	.	59	10	54	0	.	0	0	0	0	0
ANTXR2	118429	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	80976344	80976344	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ANTXR2-23	NM_001145794	exon6	c.515delG	p.S172fs	.	.	127	42	147	0	.	0	0	0	0	0
PNPLA8	50640	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	108154603	108154603	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PNPLA8-135	NM_001256008	exon3	c.1191delA	p.K397fs	.	.	106	23	89	0	.	0	0	0	0	0
SHB	6461	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	37919918	37919918	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SHB-92	NM_003028	exon6	c.1430delG	p.S477fs	.	.	140	35	150	0	.	0	0	0	0	0
IL1R2	7850	broad.mit.edu	37	2	102638648	102638649	+	Splice_Site	INS	-	-	A	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	IL1R2-522	NM_004633	exon6	c.689-1->A	.	TTCTCAGAAAAAA	.	355	8	262	0	.	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885593	29885594	+	In_Frame_Ins	INS	-	-	TGAGAAGGCCAAGTCCCC	rs59279731	bycluster	TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	NEFH-90	NM_021076	exon4	c.1964_1965insTGAGAAGGCCAAGTCCCC	p.P655delinsPEKAKSP	.	.	307	58	263	0	TGAGAAGGCCAAGTCCCC|1.000;|0.000	0	0	0	0	0
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	38101279	38101280	+	In_Frame_Ins	INS	-	-	CAT	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	DLEC1-161	NM_007337	exon3	c.609_610insCAT	p.K203delinsKH	.	.	91	39	60	0	.	0	0	0	0	0
CXCL1	2919	broad.mit.edu	37	4	74735703	74735704	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	CXCL1-204	NM_001511	exon3	c.305_306insC	p.N102fs	TGCTGAACAGGTG	.	170	9	192	0	.	0	0	0	0	0
CHCHD3	54927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	132570441	132570442	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	CHCHD3-90	NM_017812	exon5	c.434_435insC	p.L145fs	.	.	65	15	89	0	.	0	0	0	0	0
SYCE1	93426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	135372389	135372390	+	Missense_Mutation	DNP	AG	AG	TT	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SYCE1-91	NM_001143764	exon4	c.C262A	p.L88K	AGTCCAGTTCCTT	.	72.0	22.0	60.0	0.0	.	0	0	0	0	0
KLHL11	55175	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40010765	40010766	+	Missense_Mutation	DNP	TG	TG	CT	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	KLHL11-90	NM_018143	exon2	c.C1353A	p.K452E	CCCTTTGACTTCT	.	214	97	206	1	.	0	0	0	0	0