Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
LRIG2	9860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	113616165	113616165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	LRIG2-229	NM_014813	exon1	c.C137A	p.P46H	CCGCGCCCTGCTC	.	360	69	354	1	.	2	1	1	0	0
ATP1A1	476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	116941400	116941400	+	Missense_Mutation	SNP	G	G	C	rs11540954		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ATP1A1-91	NM_000701	exon16	c.G2282C	p.G761A	TGACTGGAGTAGA	.	178	56	180	0	.	0	0	0	0	0
ATP1B1	481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169096584	169096584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ATP1B1-540	NM_001677	exon4	c.T505C	p.Y169H	TATGGCTACAAAG	.	188	58	167	0	.	912	339	573	0	0
GOLT1A	127845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204183026	204183026	+	Silent	SNP	G	G	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	GOLT1A-514	NM_198447	exon1	c.C9A	p.S3S	GGTGATGGAGATC	.	50	11	42	0	.	2	0	2	0	0
FAM188A	80013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	15879212	15879212	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	FAM188A-228	NM_024948	exon6	c.A567T	p.L189F	TGTCAGTAATACA	.	278	79	228	1	.	0	0	0	0	0
TNKS2	80351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	93593686	93593686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	TNKS2-541	NM_025235	exon12	c.T1352C	p.L451P	GCCGCCTACTCCT	.	240	79	225	0	.	11	8	3	0	0
ITPRIP	85450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	106075425	106075425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ITPRIP-90	NM_001272013	exon2	c.G385A	p.A129T	AGGGGGCGCCCCC	.	179	76	167	0	.	9	6	3	0	0
WDR11	55717	ucsc.edu	37	10	122622314	122622314	+	Silent	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	WDR11-226	NM_018117	exon5	c.G594A	p.G198G	CCCTGGGAAAAAA	.	357	3	346	0	.	43	39	4	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1093502	1093502	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	MUC2-90	NM_002457	exon30	c.C5321G	p.T1774S	CCACCACTACGAT	.	13	6	5	0	.	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1093507	1093507	+	Missense_Mutation	SNP	A	A	G	rs56189540		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	MUC2-90	NM_002457	exon30	c.A5326G	p.M1776V	ACTACGATGACCC	.	14	10	5	0	.	0	0	0	0	0
SMPD1	6609	hgsc.bcm.edu	37	11	6411941	6411941	+	Missense_Mutation	SNP	C	C	T	rs78250081		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	SMPD1-90	NM_000543	exon1	c.C113T	p.A38V	TGCTGGCGCTGGC	.	53	7	33	1	.	21	21	0	0	0
MRGPRX1	259249	broad.mit.edu;bcgsc.ca	37	11	18955994	18955994	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	MRGPRX1-92	NM_147199	exon1	c.T338A	p.L113Q	GCACTCAGAAAGC	.	141	6	144	0	.	0	0	0	0	0
ABCG4	64137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119027678	119027678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ABCG4-92	NM_022169	exon9	c.G1022T	p.S341I	AGAGCAGCCCTGA	.	220	75	253	0	.	0	0	0	0	0
TXNRD1	7296	bcgsc.ca	37	12	104705164	104705164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	TXNRD1-90	.	.	.	.	GGAGGTGGCTCAG	.	77	5	56	0	.	48	48	0	0	0
WDR66	144406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	122413567	122413567	+	Silent	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	WDR66-92	NM_144668	exon19	c.T2982C	p.I994I	AGCAATTGGCTTT	.	141	49	184	0	.	2	2	0	0	0
RDH12	145226	broad.mit.edu	37	14	68191259	68191259	+	Silent	SNP	C	C	T	rs140371232		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	RDH12-91	NM_152443	exon4	c.C138T	p.G46G	CACTGGCGCCAAC	.	170	6	154	0	C|1.000;T|0.000	3	3	0	0	0
JAG2	3714	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	105622266	105622266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	JAG2-846	NM_145159	exon4	c.A536G	p.K179R	AGGCTCTTCCAGC	.	55	14	51	1	.	3	1	2	0	0
TMC3	342125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	81648105	81648105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	TMC3-70	NM_001080532	exon9	c.C896T	p.A299V	AATATAGCTTCCT	.	112	35	89	0	.	0	0	0	0	0
ADAMTS17	170691	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	100657190	100657190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ADAMTS17-228	NM_139057	exon13	c.G1750A	p.G584S	TGGCACCCGGGCA	.	50	20	65	0	.	0	0	0	0	0
IFT140	9742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1608090	1608090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	IFT140-95	NM_014714	exon19	c.C2245A	p.H749N	GGATGTGGTGGCA	.	568	163	421	1	.	24	17	7	0	0
CASKIN1	57524	hgsc.bcm.edu	37	16	2230812	2230812	+	Missense_Mutation	SNP	G	G	A	rs185628064		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	CASKIN1-92	NM_020764	exon18	c.C2557T	p.P853S	GTGGGGGCGCAGG	.	13	10	3	1	G|0.985;A|0.015	0	0	0	0	0
HCFC1R1	54985	broad.mit.edu;bcgsc.ca	37	16	3073346	3073346	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	HCFC1R1-90	NM_017885	exon3	c.C169G	p.Q57E	GAAACTGCTTGCG	.	284	9	166	0	.	388	380	7	0	1
RBBP6	5930	broad.mit.edu	37	16	24551952	24551952	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	RBBP6-230	NM_018703	exon1	c.C5G	p.S2C	CCATGTCCTGTGT	.	213	6	128	0	.	12	10	2	0	0
CLUH	23277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	2604434	2604434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	.	NM_015229	exon7	c.G911A	p.R304K	CACTACCTTTTCT	.	73	39	63	1	.	7	1	6	0	0
ANKFY1	51479	broad.mit.edu;bcgsc.ca	37	17	4084580	4084580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ANKFY1-93	NM_001257999	exon16	c.A2335G	p.N779D	GCTCGTTGTTTTC	.	212	7	121	0	.	31	31	0	0	0
ASGR1	432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7081872	7081872	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ASGR1-153	NM_001671	exon2	c.A11C	p.E4A	TGATACTCCTTGG	.	124	60	92	0	.	0	0	0	0	0
PFAS	5198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	8170542	8170542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	PFAS-94	NM_012393	exon24	c.C3164T	p.P1055L	CCGTGCCCCGTGA	.	44	13	21	0	.	1	1	0	0	0
MAP3K14	9020	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	43364549	43364549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	MAP3K14-1453	.	.	.	.	CCTGCTCAGGGGT	.	87	20	60	0	.	5	2	3	0	0
ACE	1636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61562641	61562641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ACE-94	NM_000789	exon13	c.T1966C	p.Y656H	GAGGAATATGACC	.	111	52	91	0	.	14	4	10	0	0
MYOM1	8736	broad.mit.edu	37	18	3188900	3188900	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	MYOM1-94	NM_003803	exon4	c.A617G	p.K206R	GACTGCTTGGATG	.	237	4	185	0	.	3	3	0	0	0
VPS4B	9525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	61058289	61058289	+	Silent	SNP	T	T	C	rs200045966		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	VPS4B-91	NM_004869	exon11	c.A1254G	p.L418L	GTTAGATAGTGAC	.	136	17	134	0	T|0.999;C|0.000	44	37	7	0	0
DAZAP1	26528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1428875	1428875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	DAZAP1-153	NM_018959	exon8	c.A581G	p.K194R	ACAGCAAGAGCCA	.	87	26	80	0	.	134	61	73	0	0
EEF2	1938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	3979985	3979985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	EEF2-90	NM_001961	exon10	c.G1426A	p.D476N	ACTGGTCCACGCC	.	76	23	85	0	.	1429	765	662	1	1
EIF3G	8666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10230530	10230530	+	Silent	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	EIF3G-68	NM_003755	exon1	c.T6C	p.P2P	TCCAGTAGGCATC	.	114	27	120	0	.	0	0	0	0	0
ZNF627	199692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11728624	11728624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ZNF627-91	NM_145295	exon4	c.G1306T	p.V436L	TTTCGAGTACATG	.	149	38	186	0	.	21	12	9	0	0
NXNL1	115861	broad.mit.edu	37	19	17571478	17571478	+	Silent	SNP	T	T	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	NXNL1-46	NM_138454	exon1	c.A201C	p.V67V	CCGCAGTACATAG	.	154	4	156	0	.	0	0	0	0	0
BCKDHA	593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41928188	41928188	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	BCKDHA-90	NM_000709	exon6	c.C766G	p.L256V	GCCACACTTGAGT	.	173	38	200	1	.	50	25	25	0	0
GRHL1	29841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	10101557	10101557	+	Missense_Mutation	SNP	G	G	A	rs140278187		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	GRHL1-92	NM_198182	exon4	c.G661A	p.V221I	GAAGGCGTTCAGG	.	170	54	154	0	G|1.000;A|0.000	0	0	0	0	0
BRE	9577	broad.mit.edu	37	2	28550286	28550286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	BRE-228	NM_004899	exon12	c.A1234G	p.R412G	GGAGAGAGAACTG	.	307	7	301	0	.	15	15	0	0	0
TMEM37	140738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	120194829	120194829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	TMEM37-135	NM_183240	exon2	c.T386C	p.I129T	GTTCCATCCTCCT	.	471	126	464	0	.	58	31	27	0	0
NEB	4703	broad.mit.edu	37	2	152484285	152484285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	NEB-145	NM_001271208	exon69	c.G9895T	p.D3299Y	GGTCATCTTCAAT	.	517	7	538	3	.	0	0	0	0	0
KCNH7	90134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	163241347	163241347	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	KCNH7-95	NM_033272	exon13	c.T2813C	p.I938T	GAGGAGATGAAAG	.	437	141	459	1	.	0	0	0	0	0
SLC5A3	6526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	35467607	35467607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	SLC5A3-92	NM_006933	exon2	c.G110A	p.S37N	CCGTGAGTGGATA	.	308	107	265	0	.	5	2	3	0	0
SUSD2	56241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24581140	24581140	+	Silent	SNP	C	C	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	SUSD2-91	NM_019601	exon6	c.C861A	p.A287A	TGTGGCCTGGGCA	.	69	21	79	0	.	17	15	2	0	0
BAIAP2L2	80115	ucsc.edu	37	22	38483204	38483204	+	Missense_Mutation	SNP	C	C	T	rs201090429		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	BAIAP2L2-91	NM_025045	exon11	c.G1186A	p.V396M	GGGTCACGGGGGT	.	90	4	60	2	C|0.997;T|0.003	17	17	0	0	0
TTLL1	25809	broad.mit.edu;bcgsc.ca	37	22	43442517	43442517	+	Silent	SNP	C	C	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	TTLL1-92	NM_012263	exon10	c.G1041C	p.L347L	ATTAATCAGGTTG	.	290	13	305	0	.	19	19	0	0	0
GRM2	2912	broad.mit.edu	37	3	51746862	51746862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	GRM2-522	NM_000839	exon3	c.C824T	p.A275V	AGGATGCCCGGGA	.	116	4	61	0	.	0	0	0	0	0
MFN1	55669	ucsc.edu	37	3	179094914	179094914	+	Silent	SNP	T	T	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	MFN1-155	NM_033540	exon11	c.T1182G	p.V394V	GGATGTTAAGAAA	.	151	1	99	0	.	81	69	12	0	0
PCYT1A	5130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195974373	195974373	+	Silent	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	PCYT1A-90	NM_005017	exon6	c.C351T	p.L117L	GTGTGTGAGCTCA	.	245	63	170	0	.	37	27	10	0	0
LRRC33	375387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	196387840	196387840	+	Silent	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	LRRC33-92	NM_198565	exon3	c.C1326T	p.P442P	TTGTCCCCTGCCA	.	489	202	439	1	.	9	9	0	0	0
CLOCK	9575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	56301654	56301654	+	Silent	SNP	A	A	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	CLOCK-515	NM_004898	exon23	c.T2469A	p.S823S	TTGCTGAGACTGA	.	195	62	205	0	.	11	5	6	0	0
UGT2B7	7364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	69978199	69978199	+	Silent	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	UGT2B7-92	NM_001074	exon6	c.A1335G	p.L445L	GAAATTATCAAGA	.	252	66	203	0	.	40	8	32	0	0
ARHGAP24	83478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	86921691	86921691	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ARHGAP24-227	NM_001025616	exon10	c.A2063G	p.D688G	AACTGGATCAGGA	.	129	53	151	0	.	34	23	11	0	0
BMPR1B	658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	96025660	96025660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	BMPR1B-1378	NM_001256793	exon2	c.G175A	p.V59I	CCAAAGGTCTTGC	.	171	54	140	1	.	2	2	0	0	0
SEMA5A	9037	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	9226981	9226981	+	Silent	SNP	C	C	T	rs141767878		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	SEMA5A-91	NM_003966	exon7	c.G432A	p.S144S	CCATACCGAGCGG	.	117	6	161	0	C|1.000;T|0.000	0	0	0	0	0
ADAMTS19	171019	broad.mit.edu;bcgsc.ca	37	5	128956361	128956361	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ADAMTS19-295	NM_133638	exon9	c.A1511G	p.H504R	GTCTTCATATCAT	.	276	11	225	0	.	0	0	0	0	0
GABRG2	2566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	161576298	161576298	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	GABRG2-95	NM_198903	exon9	c.A1227T	p.K409N	GGACAAAGATAAA	.	178	57	158	0	.	0	0	0	0	0
VARS	7407	broad.mit.edu	37	6	31753451	31753451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	VARS-93	NM_006295	exon9	c.C1160T	p.A387V	TGGGTGGCAATAC	.	142	4	131	0	.	10	10	0	0	0
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	56499603	56499603	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	DST-523	NM_001723	exon11	c.T1724G	p.I575S	ACCTCAATTTGTC	.	332	105	316	2	.	0	0	0	0	0
FAM135A	57579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	71234676	71234676	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	FAM135A-90	NM_001162529	exon13	c.T1889A	p.M630K	CACAAATGGAACA	.	127	52	143	0	.	10	7	3	0	0
CCDC132	55610	broad.mit.edu	37	7	92882045	92882045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	CCDC132-90	NM_024553	exon3	c.A182G	p.Y61C	AAGTATATTTTTC	.	219	4	160	0	.	4	4	0	0	0
AP4M1	9179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99700326	99700326	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	AP4M1-90	NM_004722	exon3	c.T176C	p.I59T	TTCACATCAGACA	.	266	56	186	1	.	19	15	4	0	0
CTTNBP2	83992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	117364734	117364734	+	Silent	SNP	T	T	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	CTTNBP2-94	NM_033427	exon19	c.A4314T	p.I1438I	GGAAACTATGGAT	.	187	53	147	0	.	8	7	1	0	0
CTTNBP2	83992	broad.mit.edu;bcgsc.ca	37	7	117396642	117396642	+	Silent	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	CTTNBP2-94	NM_033427	exon12	c.C3315T	p.I1105I	GAGAGGGATCATG	.	236	9	192	0	.	21	21	0	0	0
ARF5	381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	127229193	127229193	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ARF5-228	NM_001662	exon2	c.A124G	p.I42V	GGGGAGATTGTCA	.	117	46	99	0	.	240	92	148	0	0
KRBA1	84626	broad.mit.edu	37	7	149422542	149422542	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	KRBA1-91	.	.	.	.	GTCTCAGAAGCCT	.	45	4	49	0	.	5	5	0	0	0
SLC26A7	115111	broad.mit.edu	37	8	92330447	92330447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	SLC26A7-92	NM_134266	exon5	c.G481A	p.A161T	TAGGTGGCCATGT	.	278	4	254	1	.	0	0	0	0	0
RBM12B	389677	broad.mit.edu	37	8	94746263	94746263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	RBM12B-90	NM_203390	exon3	c.G2376T	p.Q792H	ATGCTCCTGAGGC	.	136	4	121	0	.	9	9	0	0	0
KIAA1429	25962	broad.mit.edu	37	8	95507107	95507107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	KIAA1429-92	NM_015496	exon20	c.T4622C	p.I1541T	GTATCTATCTCTT	.	365	6	341	0	.	13	13	0	0	0
ABRA	137735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	107782408	107782408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ABRA-92	NM_139166	exon1	c.G11T	p.G4V	TTTTCGCCCGGAG	.	125	27	110	0	.	0	0	0	0	0
MRPL13	28998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	121455496	121455496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	MRPL13-226	NM_014078	exon2	c.C80T	p.P27L	CCAGGTGGCTGCA	.	194	62	178	0	.	46	31	15	0	0
CYHR1	50626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	145690192	145690192	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	CYHR1-90	NM_032687	exon2	c.G93C	p.E31D	ACTCACCTCGGCT	.	51	18	38	0	.	4	0	4	0	0
FREM1	158326	hgsc.bcm.edu;broad.mit.edu	37	9	14824065	14824065	+	Silent	SNP	T	T	G	rs200760404	alternate_allele	TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	FREM1-138	NM_144966	exon13	c.A2127C	p.V709V	CTTAACTACTTTT	.	25	5	26	0	T|1.000;C|0.000	2	2	0	0	0
TNFSF8	944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	117666220	117666220	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	TNFSF8-655	NM_001244	exon4	c.T696G	p.N232K	GTCTGAATTACTG	.	273	82	266	0	.	0	0	0	0	0
TOR1A	1861	broad.mit.edu	37	9	132584984	132584984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	TOR1A-90	NM_000113	exon2	c.G320A	p.G107D	TTTTTGCCGGTGC	.	420	7	459	0	.	54	54	0	0	0
SELE	6401	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	169698749	169698749	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	SELE-95	NM_000450	exon6	c.781delA	p.S261fs	.	.	250	97	235	0	.	0	0	0	0	0
CEP350	9857	hgsc.bcm.edu;broad.mit.edu	37	1	179965912	179965912	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	CEP350-26	NM_014810	exon6	c.620delA	p.Q207fs	.	.	55	12	44	0	.	0	0	0	0	0
ELF3	1999	broad.mit.edu;bcgsc.ca	37	1	201981806	201981814	+	In_Frame_Del	DEL	GGTCAGCAA	GGTCAGCAA	-	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	GGTCAGCAA	GGTCAGCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ELF3-226	NM_001114309	exon5	c.517_525del	p.173_175del	GACGACGGTCAGC	.	72	9	104	0	.	0	0	0	0	0
ANGEL1	23357	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	77274402	77274411	+	Frame_Shift_Del	DEL	GAGTGAACTG	GAGTGAACTG	-	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	GAGTGAACTG	GAGTGAACTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ANGEL1-93	NM_015305	exon3	c.730_739del	p.244_247del	.	.	121	26	121	0	.	0	0	0	0	0
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	8182139	8182139	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	FBN3-100	NM_032447	exon27	c.3500delA	p.D1167fs	.	.	62	14	86	0	.	0	0	0	0	0
EP300	2033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41574679	41574681	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	EP300-2011	NM_001429	exon31	c.6964_6966del	p.2322_2322del	.	.	146	38	135	0	.	0	0	0	0	0
PIPOX	51268	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	27370356	27370357	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	PIPOX-90	NM_016518	exon1	c.113_114insG	p.Q38fs	.	.	156	78	91	0	.	0	0	0	0	0
ITGB5	3693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	124515613	124515614	+	Nonsense_Mutation	DNP	CC	CC	AT	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ITGB5		exon10	c.G1314A	p.E439*	ATGCTCCGTGTGT	.	91.0	24.0	73.0	0.0	.	0	0	0	0	0