Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PRAMEF11	440560	broad.mit.edu	37	1	12887606	12887606	+	Missense_Mutation	SNP	C	C	G	rs71232900		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	.	NM_001146344	exon3	c.G251C	p.C84S	AGGAAGCACCCAT	.	717	10	582	1	C|0.500;G|0.500	0	0	0	0	0
EPHA8	2046	hgsc.bcm.edu;broad.mit.edu	37	1	22903356	22903356	+	Missense_Mutation	SNP	G	G	C	rs139777546	byfrequency;alternate_allele	TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	EPHA8-1380	NM_020526	exon3	c.G806C	p.R269P	AGGAGCGGCGGGA	.	82	25	47	0	G|0.999;A|0.001	0	0	0	0	0
PIGV	55650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27121059	27121059	+	Silent	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	PIGV-91	NM_001202554	exon3	c.C534T	p.F178F	GACATTCAGTGCC	.	180	57	116	0	.	32	8	24	0	0
SLC9A1	6548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27428600	27428600	+	Silent	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	SLC9A1-91	NM_003047	exon9	c.G1842A	p.L614L	GGAAGGCAGGGAC	.	270	74	166	0	.	20	13	7	0	0
AGO1	26523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	36359988	36359988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	.	NM_012199	exon7	c.C857T	p.P286L	GTCGCCCTGCTAG	.	78	26	84	1	.	0	0	0	0	0
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	39907695	39907695	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	MACF1-165	NM_012090	exon72	c.T12567G	p.N4189K	CCTCAATACTGTT	.	45	12	217	0	.	3	1	2	0	0
MCOLN3	55283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	85491700	85491700	+	Silent	SNP	A	A	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	MCOLN3-91	NM_018298	exon9	c.T1017C	p.N339N	CCATCCATTGACA	.	40	13	64	0	.	0	0	0	0	0
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160105304	160105304	+	Silent	SNP	C	C	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ATP1A2-518	NM_000702	exon16	c.C2196A	p.G732G	CATGGGCATCTCT	.	246	97	142	0	.	0	0	0	0	0
ATF6	22926	hgsc.bcm.edu	37	1	161748090	161748090	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ATF6-93	NM_007348	exon2	c.G139C	p.E47Q	CAATTGGAAGCAG	.	21	2	167	0	.	2	2	0	0	0
IRF6	3664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	209964089	209964089	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	IRF6-92	NM_006147	exon7	c.C811G	p.L271V	GCTCCAGGCTGAC	.	167	71	229	0	.	12	4	8	0	0
PTEN	5728	broad.mit.edu	37	10	89624275	89624275	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	PTEN-17735	NM_000314	exon1	c.C49T	p.Q17X	AGATATCAAGAGG	.	205	6	150	0	.	14	13	1	0	0
METTL10	399818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	126477651	126477651	+	Silent	SNP	A	A	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	METTL10-22	NM_212554	exon3	c.T252C	p.L84L	AATATCAAGCACT	.	110	39	182	0	.	6	3	3	0	0
TRIM3	10612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6486812	6486812	+	Silent	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	TRIM3-714	NM_001248006	exon2	c.G114A	p.L38L	GGTGTGCAGGCAA	.	318	107	230	1	.	1	0	1	0	0
FJX1	24147	hgsc.bcm.edu	37	11	35641295	35641295	+	Missense_Mutation	SNP	A	A	G	rs202089278		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	.	NM_014344	exon1	c.A1111G	p.T371A	GAGCGGACCGCGC	.	15	5	3	1	A|0.995;G|0.005	1	0	1	0	0
TTC17	55761	hgsc.bcm.edu	37	11	43436151	43436151	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	TTC17-95	NM_018259	exon16	c.T2076G	p.F692L	GACCTTTTTGAGC	.	28	2	413	0	.	0	0	0	0	0
ZBTB3	79842	broad.mit.edu	37	11	62519739	62519739	+	Silent	SNP	G	G	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ZBTB3-585	NM_024784	exon2	c.C1548T	p.Y516Y	GTGGCGGTAGAGG	.	160	4	113	0	.	3	3	0	0	0
OTUB1	55611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63756155	63756155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	OTUB1-501	NM_017670	exon3	c.G150T	p.E50D	GTCAGAGCGGCTG	.	515	141	346	0	.	118	70	48	0	0
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	133814179	133814179	+	Silent	SNP	C	C	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	IGSF9B-68	NM_014987	exon3	c.G345T	p.V115V	CATGAGCACTTTG	.	67	32	59	0	.	0	0	0	0	0
ITGB7	3695	broad.mit.edu	37	12	53587039	53587039	+	Silent	SNP	G	G	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ITGB7-231	NM_000889	exon12	c.C1611T	p.C537C	TCCACTGCACAGG	.	129	5	81	1	.	24	24	0	0	0
CEP290	80184	broad.mit.edu	37	12	88524957	88524957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	CEP290-96	NM_025114	exon7	c.C480A	p.S160R	TAATTTGCTGTTT	.	4	2	13	0	.	0	0	0	0	0
DGKH	160851	hgsc.bcm.edu	37	13	42740683	42740683	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	DGKH-652	NM_001204504	exon10	c.A991C	p.S331R	TGTGTTAGTCCTC	.	33	2	325	0	.	0	0	0	0	0
DOCK9	23348	broad.mit.edu	37	13	99481713	99481713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	DOCK9-90	.	.	.	.	GGGCGGTGGCCAT	.	64	13	66	0	.	2	2	0	0	0
PPM1A	5494	broad.mit.edu	37	14	60749544	60749544	+	Silent	SNP	G	G	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	PPM1A-227	NM_177952	exon2	c.G342T	p.T114T	ACATACGGCTGTG	.	245	4	613	0	.	8	7	1	0	0
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	68282659	68282659	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ZFYVE26-162	NM_015346	exon2	c.G22T	p.E8X	CTTCCTCTTTTCC	.	64	24	56	0	.	0	0	0	0	0
DICER1	23405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	95556880	95556880	+	Silent	SNP	G	G	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	DICER1-961	NM_030621	exon28	c.C5724A	p.A1908A	TCGGAGGGCTCTT	.	95	36	468	0	.	1	1	0	0	0
SIVA1	10572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	105222013	105222013	+	Silent	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	SIVA1-514	NM_006427	exon2	c.C165T	p.D55D	CCTGGACCACGTG	.	314	98	228	0	.	131	58	73	0	0
TP53BP1	7158	broad.mit.edu	37	15	43733777	43733777	+	Silent	SNP	A	A	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	TP53BP1-294	NM_001141980	exon15	c.T3045C	p.P1015P	AGTTGCAGGCTCT	.	244	4	250	0	.	2	2	0	0	0
ACAN	176	hgsc.bcm.edu	37	15	89399908	89399908	+	Silent	SNP	T	T	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ACAN-25	NM_001135	exon12	c.T4092C	p.T1364T	AGAGACTGCTGCC	.	312	20	434	0	.	0	0	0	0	0
CACNA1H	8912	hgsc.bcm.edu	37	16	1251875	1251875	+	Silent	SNP	C	C	T	rs60537026	bycluster	TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	CACNA1H-67	NM_021098	exon9	c.C1425T	p.S475S	GCGCAGCTTGCGC	.	7	4	1	1	C|0.985;T|0.015	0	0	0	0	0
TMC5	79838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	19498328	19498328	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	TMC5-91	NM_001105249	exon16	c.T2425G	p.F809V	ATCATGTTCTACT	.	116	37	118	1	.	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu;broad.mit.edu	37	16	57562850	57562850	+	Silent	SNP	C	C	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	CCDC102A-91	NM_033212	exon2	c.G240T	p.L80L	CTCCTCCAGCTCC	.	38	13	24	1	.	0	0	0	0	0
CES4A	283848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67038037	67038037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	CES4A-91	NM_173815	exon9	c.C990A	p.D330E	AGATGACCCTTTG	.	399	143	284	0	.	0	0	0	0	0
TNFSF12-TNFSF13	407977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7464141	7464141	+	Silent	SNP	G	G	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	TNFSF12-TNFSF13-44	NM_172089	exon11	c.G984A	p.V328V	GTTTGTGAAACTG	.	503	135	244	1	.	731	552	179	0	0
CNTNAP1	8506	hgsc.bcm.edu;broad.mit.edu	37	17	40843435	40843435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	CNTNAP1-525	NM_003632	exon15	c.C2250A	p.D750E	TGTGGACCATCTG	.	326	19	125	1	.	0	0	0	0	0
KAT7	11143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	47869250	47869250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	.	NM_001199158	exon2	c.G18T	p.R6S	ACAGAGGAATGCA	.	434	102	322	0	.	0	0	0	0	0
QRICH2	84074	hgsc.bcm.edu	37	17	74288976	74288976	+	Missense_Mutation	SNP	G	G	A	rs75054966		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	QRICH2-94	NM_032134	exon4	c.C1334T	p.A445V	GGTTGGGCCAAAC	.	22	4	17	1	A|1.000;|0.000	0	0	0	0	0
ACSBG2	81616	broad.mit.edu	37	19	6177251	6177251	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ACSBG2-23	NM_030924	exon8	c.T750G	p.I250M	GTGGATTGCAGGA	.	82	4	107	0	.	0	0	0	0	0
ITPKC	80271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41223385	41223385	+	Silent	SNP	A	A	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ITPKC-115	NM_025194	exon1	c.A345T	p.P115P	GGAGCCAGACAGG	.	201	65	139	0	.	7	4	3	0	0
GRIN2D	2906	hgsc.bcm.edu	37	19	48945880	48945880	+	Silent	SNP	T	T	C	rs62130268		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	GRIN2D-156	NM_000836	exon13	c.T2697C	p.A899A	CAGCGCTGAGGCC	.	4	4	1	1	T|0.245;C|0.755	0	0	0	0	0
NTN5	126147	broad.mit.edu	37	19	49167945	49167945	+	Silent	SNP	A	A	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	NTN5-136	NM_145807	exon3	c.T711G	p.G237G	ACAAACACCCCCA	.	42	9	21	2	.	1	1	0	0	0
ALDH16A1	126133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49971767	49971767	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ALDH16A1-91	NM_153329	exon15	c.A2068T	p.T690S	GGCAACACTGTGG	.	542	197	345	0	.	26	17	9	0	0
ZNF134	7693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58131703	58131703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ZNF134-226	NM_003435	exon3	c.C216A	p.H72Q	TACACACCATGGA	.	82	29	293	1	.	5	2	3	0	0
PRKCE	5581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	45879507	45879507	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	PRKCE-1019	NM_005400	exon1	c.G268C	p.G90R	CCCATAGGCTACG	.	98	43	53	0	.	0	0	0	0	0
REV1	51455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	100019166	100019166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	REV1-92	NM_016316	exon21	c.G3482A	p.G1161E	ACAGCTCCAGCTA	.	123	51	198	0	.	68	38	30	0	0
LCT	3938	broad.mit.edu	37	2	136575050	136575050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	LCT-101	NM_002299	exon6	c.C1568T	p.A523V	AAGGCCGCATAGT	.	187	7	127	1	.	0	0	0	0	0
RIN2	54453	broad.mit.edu	37	20	19956190	19956190	+	Silent	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	RIN2-660	NM_001242581	exon8	c.C1668T	p.F556F	CTCCTTCATGACC	.	343	10	249	0	.	9	9	0	0	0
CBFA2T2	9139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	32199022	32199022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	CBFA2T2-92	NM_005093	exon4	c.A328G	p.T110A	CCAGCCACTTGTG	.	97	29	240	1	.	4	2	2	0	0
SLC32A1	140679	broad.mit.edu	37	20	37356313	37356313	+	Silent	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	SLC32A1-90	NM_080552	exon2	c.C609T	p.G203G	GGGCGGCCGAGTG	.	125	4	77	0	.	0	0	0	0	0
HELZ2	85441	hgsc.bcm.edu	37	20	62191642	62191642	+	Silent	SNP	T	T	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	.	NM_001037335	exon18	c.A7539G	p.V2513V	GGGCTCTACGGTC	.	34	2	12	0	.	9	9	0	0	0
RFPL3	10738	broad.mit.edu	37	22	32756482	32756482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	RFPL3-91	NM_001098535	exon2	c.A617G	p.K206R	AAGGGAAGATCCA	.	253	9	219	0	.	1	1	0	0	0
CACNA1I	8911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	40061912	40061912	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	CACNA1I-135	NM_021096	exon23	c.T4005G	p.C1335W	CCACTGTCTGGGC	.	231	79	171	2	.	0	0	0	0	0
NUP210	23225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	13415370	13415370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	NUP210-256	NM_024923	exon12	c.C1435T	p.H479Y	CACCGTGGGCCTG	.	65	25	40	0	.	1	1	0	0	0
PLCL2	23228	hgsc.bcm.edu	37	3	17053310	17053310	+	Silent	SNP	G	G	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	PLCL2-229	NM_015184	exon2	c.G2094C	p.L698L	TGAACTGGCCATG	.	59	3	178	0	.	3	3	0	0	0
TRANK1	9881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	36873055	36873055	+	Silent	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	TRANK1-24	NM_014831	exon21	c.G7887A	p.L2629L	ACAGAGCAGGCGG	.	85	32	49	0	.	3	3	0	0	0
ACAA1	30	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38178134	38178134	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ACAA1-91	NM_001130410	exon2	c.G214C	p.V72L	TGAGAACCGCGGT	.	94	28	60	0	.	36	16	20	0	0
HTT	3064	broad.mit.edu	37	4	3201562	3201562	+	Silent	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	HTT-281	NM_002111	exon41	c.C5472T	p.S1824S	TCGTTCCATGATC	.	227	10	129	0	.	3	3	0	0	0
HPSE	10855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	84243394	84243394	+	Silent	SNP	G	G	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	HPSE-227	NM_001199830	exon2	c.C351T	p.Y117Y	TTGCCAGTAACTT	.	56	24	166	0	.	4	4	0	0	0
FAM198B	51313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	159092402	159092402	+	Silent	SNP	A	A	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	FAM198B-90	NM_016613	exon2	c.T126A	p.T42T	ACACGCAGTGCCC	.	301	115	172	0	.	0	0	0	0	0
WDR17	116966	hgsc.bcm.edu	37	4	177081146	177081146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	WDR17-95	NM_170710	exon20	c.A2599G	p.R867G	ATTAGGAGAGCTG	.	30	2	117	0	.	0	0	0	0	0
FAM173B	134145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	10249973	10249973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	FAM173B-91	NM_199133	exon1	c.G13A	p.G5R	CACCTCCTCCTCC	.	122	45	116	0	.	0	0	0	0	0
ARHGEF28	64283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	73163796	73163796	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	.	NM_001080479	exon19	c.G2248C	p.G750R	ACTGTGGGACAGG	.	33	12	81	0	.	5	2	3	0	0
SHROOM1	134549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	132160478	132160478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	SHROOM1-91	NM_133456	exon3	c.C1070A	p.P357H	TCTGCAGGATACA	.	204	78	110	0	.	4	0	4	0	0
SEC24A	10802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	134002687	134002687	+	Splice_Site	SNP	G	G	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	SEC24A-68	NM_001252231	exon3	c.739+1G>A	.	AAGAAGGTAAGTG	.	137	50	99	0	.	0	0	0	0	0
SPOCK1	6695	hgsc.bcm.edu;broad.mit.edu	37	5	136834142	136834142	+	Missense_Mutation	SNP	C	C	A	rs200001053	alternate_allele	TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	SPOCK1-91	NM_004598	exon2	c.G106T	p.G36C	AATTGCCGTGGTT	.	56	17	37	0	C|0.999;G|0.000	1	1	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282083	39282083	+	Missense_Mutation	SNP	C	C	T	rs139959421		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	KCNK17-227	NM_001135111	exon1	c.G14A	p.R5Q	CGGGCTCGCGGTC	.	10	10	2	2	C|0.989;T|0.011	0	0	0	0	0
KIF6	221458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	39313488	39313488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	KIF6-713	NM_145027	exon21	c.C2309A	p.P770Q	TCCAGTGGGGTGC	.	67	29	53	0	.	0	0	0	0	0
NR2E1	7101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	108499383	108499383	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	NR2E1-187	NM_003269	exon5	c.T580G	p.F194V	CTTCTCTTCATGA	.	79	29	181	0	.	0	0	0	0	0
FOXO3	2309	broad.mit.edu	37	6	108985136	108985136	+	Missense_Mutation	SNP	C	C	T	rs34223850		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	FOXO3-1295	NM_001455	exon2	c.C1100T	p.P367L	AACTGCCACGGCT	.	210	10	110	1	C|1.000;|0.000	1	1	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5415788	5415788	+	Silent	SNP	G	G	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	TNRC18-46	NM_001080495	exon9	c.C2676T	p.P892P	GTGCAGGGGGCTG	.	40	22	12	2	.	2	0	2	0	0
DNAH11	8701	broad.mit.edu	37	7	21730436	21730436	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	DNAH11-146	.	.	.	.	TATTTATTACTAT	.	675	6	467	0	.	0	0	0	0	0
TRIM74	378108	hgsc.bcm.edu	37	7	75028469	75028469	+	Silent	SNP	A	A	G	rs236633	by2hit2allele	TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	TRIM74-40	NM_198853	exon2	c.A252G	p.P84P	GGACCCAGAGCCC	.	22	14	7	2	.	11	0	11	0	0
TFR2	7036	hgsc.bcm.edu	37	7	100224941	100224941	+	Silent	SNP	C	C	A	rs111760099		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	TFR2-92	NM_003227	exon16	c.G1941T	p.G647G	GACGTCCCCGTAG	.	20	9	7	2	C|0.997;A|0.003	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241055	131241055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	PODXL-136	NM_001018111	exon1	c.T64C	p.S22P	GCGACGACGGCAG	.	22	5	12	1	.	0	0	0	0	0
HIPK2	28996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	139299101	139299101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	HIPK2-785	NM_022740	exon8	c.A1921G	p.T641A	GGGCTGTTCCTGT	.	107	46	39	0	.	3	0	3	0	0
WDR86	349136	hgsc.bcm.edu	37	7	151078735	151078735	+	Missense_Mutation	SNP	A	A	G	rs4141455		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	.	NM_198285	exon6	c.T1064C	p.M355T	CTGCGCATGGGCG	.	3	3	0	0	T|0.151;G|0.004	0	0	0	0	0
SLC35G5	83650	hgsc.bcm.edu;broad.mit.edu	37	8	11188719	11188719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	.	NM_054028	exon1	c.G104A	p.G35D	CCTCTGGTGCCAC	.	273	14	118	1	.	1	1	0	0	0
KCNU1	157855	broad.mit.edu	37	8	36698474	36698474	+	Silent	SNP	C	C	A	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	KCNU1-23	NM_001031836	exon16	c.C1656A	p.L552L	GCACCTCCTGTTG	.	29	5	113	0	.	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	5801231	5801231	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ERMP1-69	NM_024896	exon11	c.T2012A	p.F671Y	GGAAAAAATGTTC	.	64	18	171	1	.	9	4	5	0	0
TYRP1	7306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	12694339	12694339	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	TYRP1-226	NM_000550	exon2	c.C343G	p.P115A	TGCCGTCCTGGCT	.	48	14	63	0	.	0	0	0	0	0
UNC13B	10497	hgsc.bcm.edu	37	9	35243362	35243362	+	Splice_Site	SNP	G	G	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	UNC13B-157	NM_006377	exon6	c.468+1G>C	.	AATGAGGTAGGAG	.	22	2	217	0	.	0	0	0	0	0
KIF12	113220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	116859620	116859620	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	KIF12-90	NM_138424	exon4	c.T193A	p.F65I	TCCCAAATTCCAC	.	92	32	71	0	.	47	17	30	0	0
COL27A1	85301	hgsc.bcm.edu	37	9	117052533	117052533	+	Silent	SNP	C	C	G	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	COL27A1-94	NM_032888	exon47	c.C4290G	p.G1430G	CCGGGGCGTGGTG	.	17	2	7	0	.	1	1	0	0	0
CEL	1056	hgsc.bcm.edu	37	9	135947023	135947023	+	Missense_Mutation	SNP	G	G	C	rs75294797	alternate_allele	TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	CEL-91	NM_001807	exon11	c.G2143C	p.A715P	GAGACCGCCCCCG	.	29	4	20	0	.	0	0	0	0	0
GPR112	139378	hgsc.bcm.edu	37	X	135431434	135431434	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	GPR112-183	NM_153834	exon6	c.A5569C	p.T1857P	CCTCCCACATCCC	.	18	2	157	0	.	0	0	0	0	0
HTATSF1	27336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135594033	135594033	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	HTATSF1-132	NM_001163280	exon10	c.A2129T	p.E710V	ATGAGGAGGAAGA	.	17	14	131	1	.	85	3	81	0	1
F13B	2165	broad.mit.edu	37	1	197021793	197021794	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	F13B-92	NM_001994	exon9	c.1525_1526del	p.509_509del	TTCACTTCTCCTC	.	6	2	151	0	.	0	0	0	0	0
OSBPL5	114879	hgsc.bcm.edu;broad.mit.edu	37	11	3143300	3143300	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	OSBPL5-113	NM_145638	exon5	c.329delA	p.K110fs	.	.	25	11	9	0	.	0	0	0	0	0
FSD2	123722	broad.mit.edu	37	15	83437762	83437764	+	In_Frame_Del	DEL	TAA	TAA	-	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	TAA	TAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	FSD2-90	NM_001007122	exon9	c.1421_1423del	p.474_475del	TGGTTTTAATAAT	.	22	9	16	0	.	0	0	0	0	0
KIAA0430	9665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	15716936	15716936	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	KIAA0430-90	NM_014647	exon11	c.2315delT	p.F772fs	.	.	195	63	253	0	.	0	0	0	0	0
CEP192	55125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	13049324	13049324	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	CEP192-27	NM_032142	exon16	c.2534delT	p.V845fs	.	.	61	19	249	0	.	0	0	0	0	0
COX7A1	1346	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36642400	36642402	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	COX7A1-226	NM_001864	exon3	c.149_151del	p.50_51del	.	.	242	64	194	0	.	0	0	0	0	0
CTBP1	1487	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	1232016	1232016	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	CTBP1-91	NM_001328	exon2	c.150delT	p.T50fs	.	.	275	80	164	0	.	0	0	0	0	0
MAST4	375449	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	66438012	66438022	+	Frame_Shift_Del	DEL	AGGCAGAATTT	AGGCAGAATTT	-	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	AGGCAGAATTT	AGGCAGAATTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	MAST4-647	NM_001164664	exon20	c.2564_2574del	p.855_858del	.	.	41	16	271	0	.	0	0	0	0	0
HIST1H2AD	3013	broad.mit.edu	37	6	26199108	26199109	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	HIST1H2AD-90	NM_021065	exon1	c.363_364del	p.121_122del	GACTCTCAGTCTT	.	281	26	188	0	.	0	0	0	0	0
BTN3A2	11118	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	26370805	26370805	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	BTN3A2-90	NM_001197246	exon3	c.689delA	p.E230fs	.	.	196	70	253	0	.	0	0	0	0	0
PRB2	653247	broad.mit.edu	37	12	11546691	11546692	+	In_Frame_Ins	INS	-	-	TTG	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	PRB2-22	NM_006248	exon3	c.321_322insCAA	p.K107delinsNK	TCGGGACTTGTCT	.	2149	7	1175	0	.	0	0	0	0	0
ERF	2077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	42752789	42752790	+	In_Frame_Ins	INS	-	-	AAA	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ERF-658	NM_006494	exon4	c.1475_1476insTTT	p.C492delinsFC	.	.	249	60	190	0	.	0	0	0	0	0
MAGI2	9863	broad.mit.edu	37	7	79082570	79082571	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	MAGI2-461	NM_012301	exon1	c.67_68insG	p.N23fs	CCGGGTTCCTGCC	.	916	7	347	0	.	0	0	0	0	0
ATP11A	23250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	113516824	113516825	+	Missense_Mutation	DNP	GC	GC	AG	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ATP11A		exon25	c.C2927G	p.A976R	TTGACGCACTGGT	.	92.0	38.0	86.0	0.0	.	0	0	0	0	0