Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
TMEM82	388595	hgsc.bcm.edu	37	1	16070782	16070782	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TMEM82-90	NM_001013641	exon4	c.T464G	p.L155R	TGCTGCTGAGCCT	.	5	3	2	1	.	34	20	14	0	0
ARHGEF19	128272	broad.mit.edu;ucsc.edu	37	1	16532837	16532837	+	Splice_Site	SNP	T	T	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ARHGEF19-229	NM_153213	exon8	c.1138-2A>C	.	TTGGCCTGAGGGA	.	7	3	12	0	.	5	1	4	0	0
TAS1R2	80834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19166252	19166252	+	Silent	SNP	C	C	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TAS1R2-93	NM_152232	exon6	c.G2361C	p.L787L	GGTGACCAGCACC	.	37	16	50	0	.	0	0	0	0	0
AGO1	26523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	36354062	36354062	+	Silent	SNP	G	G	A	rs79428335	alternate_allele	TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	.	NM_012199	exon2	c.G60A	p.V20V	GCAGGTGTTCCAG	.	107	30	124	0	.	13	8	5	0	0
UROD	7389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	45478626	45478626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	UROD-90	NM_000374	exon2	c.C68T	p.A23V	GAGCAGCCTGGGG	.	61	17	66	1	.	81	44	37	0	0
PDZK1	5174	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	145752477	145752477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PDZK1-90	NM_002614	exon5	c.G510T	p.M170I	GGCTATGAGAGCT	.	158	41	183	0	.	436	255	181	0	0
RPRD2	23248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150390094	150390094	+	Silent	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	RPRD2-23	NM_015203	exon2	c.T228C	p.N76N	TTTGAATCTCTTT	.	284	97	298	0	.	44	17	27	0	0
POGZ	23126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151395875	151395875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	POGZ-93	NM_015100	exon10	c.C1676A	p.T559N	TTACTAGTAGATT	.	82	35	108	1	.	0	0	0	0	0
SLC9C2	284525	hgsc.bcm.edu	37	1	173545857	173545857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	.	NM_178527	exon8	c.T845C	p.V282A	AGTCCTACAGCGG	.	59	3	67	0	.	0	0	0	0	0
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	186158954	186158954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	HMCN1-113	NM_031935	exon107	c.A16852G	p.I5618V	GGGACCATTGAAT	.	115	31	119	0	.	1	1	0	0	0
LRRN2	10446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204588079	204588079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	LRRN2-514	NM_006338	exon3	c.A1042G	p.S348G	AGGCACTGAGAGC	.	37	10	45	0	.	0	0	0	0	0
URB2	9816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	229771856	229771856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	URB2-174	NM_014777	exon4	c.C1496T	p.S499F	TACTCTCTGCATG	.	174	57	199	0	.	7	6	1	0	0
WNT8B	7479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	102239758	102239758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	WNT8B-625	NM_003393	exon3	c.G230A	p.G77E	ATGGTGGGCTTCG	.	31	8	49	0	.	0	0	0	0	0
NLRP14	338323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	7064099	7064099	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	NLRP14-295	NM_176822	exon4	c.A842C	p.Q281P	GGACCCAAGAACA	.	101	33	128	1	.	0	0	0	0	0
MADD	8567	hgsc.bcm.edu	37	11	47346058	47346058	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MADD-682	NM_130475	exon33	c.T4652C	p.L1551P	AGGACCTGAAGAC	.	38	3	66	0	.	31	31	0	0	0
PRPF19	27339	hgsc.bcm.edu	37	11	60670932	60670932	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PRPF19-91	NM_014502	exon3	c.G245T	p.W82L	CTCACCCACTCAT	.	22	11	15	1	.	0	0	0	0	0
PRKRIR	5612	hgsc.bcm.edu;broad.mit.edu	37	11	76062971	76062971	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PRKRIR-93	NM_004705	exon5	c.T1223A	p.L408H	TGAAAAAGAACAG	.	79	22	83	0	.	18	12	6	0	0
SYTL2	54843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	85445140	85445140	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SYTL2-137	NM_001162953	exon6	c.T1232A	p.M411K	GAAGTCATTGGCT	.	156	43	182	0	.	28	14	14	0	0
ADAMTS8	11095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	130284505	130284505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ADAMTS8-226	NM_007037	exon5	c.C1487A	p.A496D	CCGTCAGCCCAGG	.	124	39	170	0	.	0	0	0	0	0
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	26553127	26553127	+	Silent	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ITPR2-542	NM_002223	exon53	c.C7464T	p.T2488T	CAGCACGGTGACA	.	229	53	170	0	.	10	8	2	0	0
TMBIM6	7009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	50149442	50149442	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TMBIM6-90	NM_001098576	exon4	c.T364C	p.S122P	TTGGGCTCCCTGA	.	319	70	256	2	.	2069	1468	597	2	2
AMHR2	269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53824991	53824991	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	AMHR2-628	NM_020547	exon11	c.G1456C	p.D486H	CTAGAAGACTGTT	.	166	83	193	0	.	0	0	0	0	0
WSCD2	9671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	108641980	108641980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	WSCD2-136	NM_014653	exon9	c.C1558T	p.R520C	TTCAAGCGCTCAG	.	95	19	80	0	.	0	0	0	0	0
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	39452997	39452997	+	Silent	SNP	C	C	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	FREM2-100	NM_207361	exon23	c.C8889G	p.T2963T	AGCGACCAGTTTT	.	122	35	128	0	.	22	10	12	0	0
ANKRD10	55608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	111532214	111532214	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ANKRD10-226	NM_017664	exon6	c.T1033A	p.C345S	AACCGCACAACTC	.	102	30	117	2	.	92	46	46	0	0
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23862897	23862897	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MYH6-94	NM_002471	exon22	c.A2906C	p.E969A	TGCTTCTCCTTCT	.	113	33	142	0	.	0	0	0	0	0
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	23897724	23897724	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MYH7-94	NM_000257	exon15	c.T1563G	p.I521M	GAGGTCAATGCAG	.	82	6	123	0	.	0	0	0	0	0
RIPK3	11035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24805465	24805465	+	Silent	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	RIPK3-946	NM_006871	exon10	c.C1473A	p.P491P	TGGTGGGGGGTGC	.	102	27	138	0	.	3	3	0	0	0
SEC23A	10484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	39524378	39524378	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SEC23A-95	NM_006364	exon14	c.T1628A	p.L543H	CACCTAAGCACAT	.	174	50	222	1	.	59	34	25	0	0
HERC2	8924	broad.mit.edu	37	15	28460930	28460930	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	HERC2-234	NM_004667	exon39	c.T6047G	p.V2016G	CTGTACACCAGCC	.	83	9	76	3	.	11	10	1	0	0
NR2E3	10002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	72104834	72104834	+	Silent	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	NR2E3-22	NM_016346	exon5	c.C730T	p.L244L	TCCAGCCTGCCCT	.	28	10	17	0	.	0	0	0	0	0
CHTF18	63922	broad.mit.edu;ucsc.edu	37	16	842454	842454	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	CHTF18-227	NM_022092	exon11	c.C1342G	p.L448V	AACGTCCTCCTGA	.	8	3	10	0	.	6	5	1	0	0
MAPK8IP3	23162	broad.mit.edu	37	16	1815160	1815160	+	Silent	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MAPK8IP3-1109	NM_015133	exon20	c.G2424A	p.L808L	CGTGCTGTGCATC	.	38	3	66	0	.	6	6	0	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2155892	2155892	+	Silent	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PKD1-91	NM_000296	exon20	c.T7837C	p.L2613L	GGGCCAACGAGTA	.	67	4	48	2	.	6	5	1	0	0
MYLK3	91807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	46766187	46766187	+	Silent	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MYLK3-374	NM_182493	exon4	c.G1395A	p.R465R	CGGAGCCCTGGCT	.	110	57	70	0	.	0	0	0	0	0
AMFR	267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	56435720	56435720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	AMFR-1009	NM_001144	exon8	c.A1010G	p.N337S	TCATTGTTGACAG	.	174	85	143	0	.	62	23	39	0	0
NDEL1	81565	broad.mit.edu	37	17	8370302	8370302	+	Silent	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	NDEL1-90	NM_030808	exon9	c.T999C	p.R333R	CTCGCGTCCATCG	.	185	5	153	0	.	45	45	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	659	90	525	83	.	69	13	56	0	0
PEX12	5193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	33903043	33903043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PEX12-90	NM_000286	exon3	c.C838T	p.P280S	GAGTAGGCAGGGC	.	147	65	128	1	.	17	11	6	0	0
SMAD4	4089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	48581177	48581177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SMAD4-4758	NM_005359	exon5	c.G481A	p.E161K	AAGGATGAATATG	.	86	19	107	0	.	30	30	0	0	0
SMAD4	4089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	48581187	48581187	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SMAD4-4758	NM_005359	exon5	c.A491G	p.H164R	ATGTGCATGACTT	.	102	26	117	0	.	16	16	0	0	0
TCF4	6925	hgsc.bcm.edu	37	18	52921883	52921883	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TCF4-523	NM_001243226	exon16	c.G1501C	p.V501L	GGAGAACATGAAT	.	27	2	28	0	.	14	14	0	0	0
RNF152	220441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	59483577	59483577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	RNF152-226	NM_173557	exon2	c.G120T	p.Q40H	CATCTGCTGCAGG	.	70	29	74	0	.	8	4	4	0	0
FZR1	51343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	3527659	3527659	+	Silent	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	FZR1-227	NM_001136198	exon6	c.C501A	p.P167P	GAAACCCACCCGC	.	42	9	60	0	.	32	17	15	0	0
MAP2K2	5605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4117623	4117623	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MAP2K2-510	NM_030662	exon2	c.A97C	p.N33H	CCAGGTTTGCCCT	.	64	23	103	0	.	0	0	0	0	0
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11144150	11144150	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SMARCA4-1523	NM_003072	exon26	c.G3731C	p.R1244P	AGCGGCGCGCCTT	.	92	21	132	1	.	87	49	38	0	0
KANK2	25959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11304538	11304538	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	KANK2-68	NM_015493	exon2	c.T218A	p.L73Q	CGGGGCAGCGAGC	.	51	19	76	0	.	20	14	6	0	0
ZNF791	163049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12739559	12739559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ZNF791-92	NM_153358	exon4	c.C1216A	p.H406N	AGAAATCACACTG	.	207	77	243	0	.	6	2	4	0	0
ZNF260	339324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	37005333	37005333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ZNF260-90	NM_001166038	exon3	c.C808T	p.H270Y	CAATATGAATTTT	.	134	42	156	0	.	6	3	3	0	0
GSK3A	2931	hgsc.bcm.edu	37	19	42746451	42746451	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	GSK3A-981	NM_019884	exon1	c.T167C	p.M56T	CCACCCATGGCCC	.	4	2	3	2	.	4	1	3	0	0
NOSIP	51070	hgsc.bcm.edu;broad.mit.edu	37	19	50063190	50063190	+	Splice_Site	SNP	C	C	G	rs150449733	alternate_allele	TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	NOSIP-91	NM_001270960	exon4	c.176+1G>C	.	AGCTCACGTGACA	.	16	3	24	0	C|1.000;T|0.000	0	0	0	0	0
TTYH1	57348	broad.mit.edu	37	19	54932519	54932519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TTYH1-90	NM_020659	exon3	c.C374T	p.A125V	GCTCTGCGCTGCT	.	82	4	96	0	.	0	0	0	0	0
SLC3A1	6519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44507998	44507998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SLC3A1-90	NM_000341	exon2	c.G574T	p.D192Y	ATGGAAGATTTTG	.	125	37	147	0	.	694	340	352	0	2
PNPT1	87178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55908004	55908004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PNPT1-90	NM_033109	exon6	c.T503C	p.L168P	ATTGCTAGGACAT	.	78	23	123	0	.	0	0	0	0	0
FANCL	55120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	58431304	58431304	+	Silent	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	FANCL-661	NM_018062	exon6	c.T432C	p.S144S	TCTACCAGAAGCA	.	166	45	197	0	.	11	8	3	0	0
TET3	200424	hgsc.bcm.edu	37	2	74275021	74275021	+	Silent	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	.	NM_144993	exon1	c.C1572T	p.P524P	CCTGCCCCCAGAA	.	19	5	26	0	.	6	3	3	0	0
THNSL2	55258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	88482283	88482283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	THNSL2-91	NM_018271	exon5	c.A868G	p.I290V	AATGACATCATCC	.	88	27	103	0	.	74	38	36	0	0
TRIM43	129868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	96260855	96260855	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TRIM43-63	NM_138800	exon3	c.A469T	p.N157Y	CAGAGAAATCTAT	.	46	14	66	0	.	0	0	0	0	0
ZEB2	9839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	145156027	145156027	+	Silent	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ZEB2-297	NM_014795	exon8	c.C2727T	p.F909F	TGGCATGAAAGTA	.	172	60	240	0	.	21	18	3	0	0
LY75-CD302	100526664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	160637446	160637446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	.	NM_001198759	exon36	c.A5165G	p.K1722R	CATTGCTTTTTCA	.	103	27	116	0	.	21	21	0	0	0
UBR3	130507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170843265	170843265	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	UBR3-68	NM_172070	exon25	c.C3745G	p.R1249G	GAAGATCGACCTA	.	103	29	135	0	.	17	7	10	0	0
DYTN	391475	hgsc.bcm.edu	37	2	207564616	207564616	+	Splice_Site	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	DYTN-23	NM_001093730	exon8	c.556-2A>G	.	AACACCTGAAAAA	.	49	3	42	0	.	0	0	0	0	0
ANKMY1	51281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	241468551	241468551	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ANKMY1-90	NM_016552	exon4	c.A589C	p.N197H	TTTCATTGAGGAA	.	153	46	200	1	.	1	0	1	0	0
FITM2	128486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	42935425	42935425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	FITM2-24	NM_001080472	exon2	c.C629A	p.A210D	TAAACAGCTGTGC	.	55	18	64	0	.	18	8	10	0	0
MIR124-3	406909	broad.mit.edu;bcgsc.ca	37	20	61809914	61809914	+	RNA	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	.	.	.	.	.	GCACGCGGTGAAT	.	33	9	47	0	.	0	0	0	0	0
MYH9	4627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	36716872	36716872	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MYH9-292	NM_002473	exon8	c.T839A	p.L280H	GACAGGAGATAAT	.	40	11	33	0	.	306	183	122	1	0
EP300	2033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	41489069	41489069	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	EP300-2011	NM_001429	exon1	c.C61G	p.P21A	TCATCTCCGGCCC	.	159	41	179	2	.	7	5	2	0	0
EXOSC7	23016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	45038724	45038724	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	EXOSC7-90	NM_015004	exon4	c.G400C	p.V134L	TGCTGGGTTCTCT	.	101	44	85	0	.	52	26	26	0	0
ROBO1	6091	broad.mit.edu;ucsc.edu	37	3	78735047	78735047	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ROBO1-67	NM_002941	exon10	c.A1191T	p.Q397H	TGGTGGTTGATAT	.	25	4	18	0	.	15	9	6	0	0
OR5H1	26341	broad.mit.edu	37	3	97852336	97852336	+	Silent	SNP	G	G	A	rs138973744		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	OR5H1-136	NM_001005338	exon1	c.G795A	p.P265P	ATCTCCGCAAGCA	.	207	5	168	0	G|1.000;A|0.000	0	0	0	0	0
BOC	91653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	112991328	112991328	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	BOC-157	NM_033254	exon7	c.A739C	p.S247R	GGCCAGAGTCTCA	.	318	73	261	0	.	3	2	1	0	0
RPN1	6184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	128348859	128348859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	RPN1-652	NM_002950	exon5	c.G971A	p.G324D	CACCCGCCAAAGA	.	87	41	68	0	.	802	282	520	0	0
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	142268491	142268491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ATR-1139	NM_001184	exon15	c.G3001T	p.D1001Y	CAAGATCAGGTAG	.	82	37	64	0	.	11	3	8	0	0
FBXL5	26234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	15640266	15640266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	FBXL5-226	NM_001193534	exon4	c.A448G	p.I150V	TTTTAATATCCTT	.	65	21	73	0	.	159	78	81	0	0
GC	2638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	72620174	72620174	+	Silent	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	GC-93	NM_001204307	exon11	c.C1273T	p.L425L	CACATAGTTCTTG	.	54	16	45	0	.	0	0	0	0	0
USO1	8615	broad.mit.edu;ucsc.edu	37	4	76703850	76703850	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	USO1-25	.	.	.	.	GAAGATTGTTTGA	.	8	5	12	0	.	50	36	14	0	0
TERT	7015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1282605	1282605	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TERT-1272	NM_001193376	exon3	c.A1708C	p.K570Q	TGTTCTTTTGAAA	.	51	13	79	0	.	0	0	0	0	0
CDH6	1004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	31323226	31323226	+	Silent	SNP	T	T	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	CDH6-159	NM_004932	exon12	c.T2184G	p.T728T	CCCCACTGCCCCG	.	34	5	39	0	.	233	186	46	0	1
JMY	133746	hgsc.bcm.edu	37	5	78610479	78610479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	JMY-227	NM_152405	exon9	c.C2464A	p.P822T	CCCCCACCACCAC	.	18	3	26	1	.	1	1	0	0	0
TRIM36	55521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	114515696	114515696	+	Silent	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TRIM36-725	NM_001017397	exon1	c.C39T	p.I13I	TTCCATGATGTAG	.	137	47	162	0	.	0	0	0	0	0
PCDHGA1	56114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140712438	140712438	+	Silent	SNP	A	A	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PCDHGA1-137	NM_018912	exon1	c.A2187G	p.G729G	TTCGGGAGGCGGC	.	98	37	91	0	.	3	3	0	0	0
LARS	51520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	145506033	145506033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	LARS-90	NM_020117	exon28	c.A2956G	p.M986V	TCTTCATGTATTT	.	86	24	112	0	.	58	24	34	0	0
PDGFRB	5159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149511592	149511592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PDGFRB-1499	NM_002609	exon8	c.C1193A	p.A398D	TGGAAGGCCCGCA	.	53	11	98	0	.	10	10	0	0	0
PRPF4B	8899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	4032504	4032504	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PRPF4B-1308	NM_003913	exon2	c.A753C	p.K251N	AGAGAAAATTGGT	.	188	79	216	0	.	28	17	11	0	0
MUC21	394263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30954340	30954340	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MUC21-92	NM_001010909	exon2	c.A388T	p.S130C	CCCTCCAGTGGGG	.	249	57	255	0	.	0	0	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	51889440	51889440	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PKHD1-603	NM_170724	exon32	c.G5168C	p.R1723T	CACCCTCTGATGC	.	97	28	114	0	.	12	5	7	0	0
LIMK1	3984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	73530183	73530183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	LIMK1-523	NM_002314	exon13	c.G1462A	p.E488K	GTGGACGAGAAGA	.	76	22	70	0	.	50	40	10	0	0
STYXL1	51657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	75633079	75633079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	STYXL1-278	NM_016086	exon7	c.A694G	p.I232V	TACCAATGAAGTG	.	80	47	73	0	.	0	0	0	0	0
STYXL1	51657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	75643205	75643205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	STYXL1-278	NM_016086	exon5	c.A308G	p.D103G	ACAAGATCTGAGA	.	189	89	165	0	.	0	0	0	0	0
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu	37	7	107836289	107836289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	NRCAM-156	NM_001037132	exon12	c.C1379A	p.A460E	GTGTTTGCAGGTG	.	59	3	59	0	.	17	17	0	0	0
ZNF786	136051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	148767681	148767681	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ZNF786-50	NM_152411	exon4	c.C2183A	p.P728H	CTCTCGGGCCTGT	.	297	138	241	1	.	2	2	0	0	0
GIMAP6	474344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150325338	150325338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	GIMAP6-93	NM_001244071	exon3	c.C124T	p.R42C	TAAGACGATGGCT	.	155	36	137	0	.	6	6	0	0	0
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	52336162	52336162	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PXDNL-70	NM_144651	exon14	c.G1768C	p.V590L	TGGTCACAGCAAG	.	36	17	40	0	.	0	0	0	0	0
DMRT2	10655	hgsc.bcm.edu	37	9	1051930	1051930	+	Missense_Mutation	SNP	C	C	G	rs112585712		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	DMRT2-514	NM_006557	exon2	c.C317G	p.T106S	GCTGCACTCCCGC	.	3	3	1	1	C|0.976;G|0.024	0	0	0	0	0
SCAI	286205	broad.mit.edu	37	9	127790688	127790688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SCAI-138	NM_173690	exon6	c.G465T	p.Q155H	GTATAGCTGCCCA	.	98	9	87	0	.	0	0	0	0	0
TOR1A	1861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	132576423	132576423	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TOR1A-90	NM_000113	exon5	c.A827C	p.H276P	TTTAGGTGTTTGT	.	231	69	263	0	.	40	18	22	0	0
FUT7	2529	broad.mit.edu	37	9	139925712	139925712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	FUT7-90	NM_004479	exon2	c.G479T	p.W160L	GGCCCCCAGTGGG	.	15	3	14	0	.	0	0	0	0	0
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	40999924	40999924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	USP9X-563	NM_001039591	exon7	c.C670A	p.L224I	GTGGATCTTCTCA	.	80	55	57	0	.	38	7	31	0	0
SHROOM4	57477	hgsc.bcm.edu	37	X	50350698	50350698	+	Silent	SNP	C	C	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SHROOM4-131	NM_020717	exon6	c.G3444A	p.E1148E	CTCCTCCTCCTCT	.	12	2	8	0	.	0	0	0	0	0
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	144915498	144915498	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PDE4DIP-663	NM_001002811	exon10	c.2416delA	p.M806fs	.	.	447	85	452	0	.	0	0	0	0	0
PROSER1	80209	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	39587574	39587574	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	.	NM_025138	exon11	c.1815delT	p.V605fs	.	.	191	72	247	0	.	0	0	0	0	0
CPSF3	51692	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	9570989	9570994	+	In_Frame_Del	DEL	TTCTGA	TTCTGA	-	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	TTCTGA	TTCTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	CPSF3-153	NM_016207	exon4	c.321_326del	p.107_109del	.	.	133	41	124	0	.	0	0	0	0	0
SH3TC1	54436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	8229750	8229752	+	In_Frame_Del	DEL	ACC	ACC	-	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	ACC	ACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SH3TC1-154	NM_018986	exon12	c.2329_2331del	p.777_777del	.	.	49	12	43	0	.	0	0	0	0	0
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	104041471	104041471	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	CENPE-277	NM_001813	exon44	c.7163delA	p.N2388fs	.	.	62	18	68	0	.	0	0	0	0	0
SLC34A1	6569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176824798	176824800	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SLC34A1-91	NM_003052	exon13	c.1431_1433del	p.477_478del	.	.	118	26	136	0	.	0	0	0	0	0
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	28405254	28405255	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	EFCAB5-70	NM_198529	exon15	c.2759_2760insA	p.P920fs	.	.	88	19	54	0	.	0	0	0	0	0
DARS	1615	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	136673870	136673871	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	DARS-91	NM_001349	exon11	c.1032_1033insT	p.L344fs	.	.	153	48	149	0	.	0	0	0	0	0
LRBA	987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	151827133	151827134	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	LRBA-157	NM_006726	exon13	c.1612_1613insA	p.S538fs	.	.	67	27	78	0	.	0	0	0	0	0
ZNF3	7551	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99669265	99669266	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ZNF3-91	NM_032924	exon6	c.842_843insG	p.E281fs	.	.	113	28	83	0	.	0	0	0	0	0
ENGASE	64772	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	77077140	77077141	+	Missense_Mutation	DNP	TC	TC	CG	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ENGASE		exon6	c.C858G	p.L286P	CGAACTCAACCAG	.	28.0	16.0	25.0	0.0	.	0	0	0	0	0
KDM4B	23030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5082512	5082513	+	Missense_Mutation	DNP	TC	TC	CA	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	KDM4B		exon9	c.C916A	p.Q306K	GCCACTCAGGTAA	.	38.0	9.0	56.0	0.0	.	0	0	0	0	0
TMEM67	91147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	94797545	94797546	+	Missense_Mutation	DNP	TA	TA	CT	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TMEM67		exon12	c.A1228T	p.I410F	CAATATATTTTGG	.	228.0	69.0	268.0	1.0	.	0	0	0	0	0