Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
AGRN	375790	hgsc.bcm.edu	37	1	984366	984366	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	AGRN-136	NM_198576	exon24	c.C4225T	p.L1409L	GGGCTGCTGCTGT	.	12	11	6	2	.	36	19	17	0	0
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27106982	27106982	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	ARID1A-584	NM_006015	exon20	c.T6593C	p.F2198S	TGGGCTTCCTAGA	.	108	14	96	1	.	18	15	3	0	0
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	39775962	39775962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MACF1-165	NM_012090	exon26	c.C2977A	p.L993I	AAGAACCTTCAGG	.	53	12	52	0	.	1	1	0	0	0
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	41976755	41976755	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	HIVEP3-157	NM_024503	exon9	c.C6588G	p.P2196P	ACCGATGGGAATC	.	122	22	149	0	.	1	1	0	0	0
HECTD3	79654	hgsc.bcm.edu	37	1	45476719	45476719	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	HECTD3-658	NM_024602	exon1	c.C211T	p.L71L	GCCCCAGGCCCTC	.	2	2	5	1	.	0	0	0	0	0
NTNG1	22854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	107937850	107937850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	NTNG1-140	NM_001113228	exon4	c.C962A	p.T321N	ACAACACTACAGG	.	199	35	203	0	.	0	0	0	0	0
IGSF3	3321	hgsc.bcm.edu;broad.mit.edu	37	1	117131439	117131439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	IGSF3-92	NM_001542	exon9	c.G2377A	p.E793K	TGACCTCGGCTCT	.	56	12	35	0	.	1	1	0	0	0
SELL	6402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169677647	169677647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	SELL-90	NM_000655	exon3	c.G422A	p.C141Y	TCCACGCAGTCCT	.	86	23	76	0	.	1	1	0	0	0
FMN2	56776	hgsc.bcm.edu	37	1	240371469	240371469	+	Silent	SNP	C	C	T	rs199920451		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	FMN2-145	NM_020066	exon5	c.C3357T	p.P1119P	CATACCCCCTCCT	.	31	3	19	2	C|0.999;T|0.001	0	0	0	0	0
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	16918967	16918967	+	Missense_Mutation	SNP	G	G	A	rs143741363		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	CUBN-166	NM_001081	exon57	c.C9035T	p.P3012L	AGAACCGGCCCAG	.	119	18	113	0	G|1.000;A|0.000	41	21	20	0	0
ACADSB	36	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	124793900	124793900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	ACADSB-92	NM_001609	exon2	c.C71T	p.S24F	GTTTGTCTTCTTG	.	168	37	118	0	.	2	1	1	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1092643	1092643	+	Missense_Mutation	SNP	A	A	C	rs149562922		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MUC2-90	NM_002457	exon30	c.A4462C	p.T1488P	CCTCCAACAACCA	.	9	4	0	0	.	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1092795	1092795	+	Silent	SNP	T	T	A	rs12786761		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MUC2-90	NM_002457	exon30	c.T4614A	p.T1538T	CACCACTCCCATC	.	11	9	0	0	.	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1092813	1092813	+	Silent	SNP	C	C	T	rs12577898		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MUC2-90	NM_002457	exon30	c.C4632T	p.T1544T	CACCACCACGGTG	.	27	6	2	1	.	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1093410	1093410	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MUC2-90	NM_002457	exon30	c.C5229A	p.T1743T	CCCAACCACGACA	.	62	12	4	0	.	0	0	0	0	0
OR8J3	81168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55904466	55904466	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	OR8J3-70	NM_001004064	exon1	c.G729A	p.S243S	CATATGCGAAGCG	.	117	25	119	1	.	0	0	0	0	0
DPAGT1	1798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118971040	118971040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	DPAGT1-221	NM_001382	exon4	c.G575A	p.G192D	TCTAGGCCGTTAA	.	166	28	153	0	.	12	8	4	0	0
DGKA	1606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56346149	56346149	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	DGKA-255	NM_201554	exon20	c.C1677G	p.F559L	GTACTTCGAATTT	.	172	57	133	0	.	4	3	1	0	0
PHLDA1	22822	hgsc.bcm.edu	37	12	76424647	76424647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	PHLDA1-90	NM_007350	exon1	c.T875C	p.V292A	GATTTGACCGCCA	.	28	2	20	0	.	10	10	0	0	0
FGD6	55785	broad.mit.edu	37	12	95479666	95479666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	FGD6-137	NM_018351	exon19	c.G3997T	p.D1333Y	AAGAATCCTCTGT	.	253	4	260	0	.	1	1	0	0	0
WSCD2	9671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	108589975	108589975	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	WSCD2-136	NM_014653	exon2	c.G366C	p.E122D	CCGGGAGAAGGAG	.	59	22	40	0	.	0	0	0	0	0
VPS37B	79720	broad.mit.edu	37	12	123351888	123351888	+	Silent	SNP	T	T	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	VPS37B-90	NM_024667	exon4	c.A633C	p.P211P	CGGGGGTGGTGGG	.	30	4	22	3	.	1	1	0	0	0
ZC3H13	23091	broad.mit.edu;ucsc.edu	37	13	46549686	46549686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	ZC3H13-92	NM_015070	exon12	c.G2200T	p.D734Y	CTCGATCGTGGTC	.	17	3	19	0	.	16	9	7	0	0
SOX1	6656	hgsc.bcm.edu	37	13	112722435	112722435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	SOX1-468	NM_005986	exon1	c.A463G	p.M155V	GTGGCCATGGGCG	.	4	3	1	1	.	0	0	0	0	0
RDH11	51109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68157017	68157017	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	RDH11-91	NM_016026	exon5	c.C576T	p.G192G	TTTCTCGCCCTGC	.	90	26	110	0	.	27	7	20	0	0
RFX7	64864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	56387238	56387238	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	RFX7-90	NM_022841	exon9	c.G2688C	p.Q896H	CATTTGCTGCTCC	.	81	15	57	0	.	2	2	0	0	0
HERC1	8925	hgsc.bcm.edu	37	15	63947971	63947971	+	Missense_Mutation	SNP	T	T	C	rs202195874		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	HERC1-666	NM_003922	exon50	c.A10054G	p.N3352D	CATAGTTAGGTCT	.	11	7	8	1	.	2	2	0	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53730090	53730090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	RPGRIP1L-91	NM_001127897	exon3	c.C203T	p.A68V	TTGCGGGCATGCT	.	253	5	191	0	.	2	2	0	0	0
CES1	1066	hgsc.bcm.edu	37	16	55866949	55866949	+	Missense_Mutation	SNP	T	T	C	rs114788146		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	CES1-68	NM_001025195	exon1	c.A19G	p.I7V	CCAGGATAAAGGC	.	53	5	51	1	T|1.000;C|0.000	1	1	0	0	0
DNAH2	146754	broad.mit.edu	37	17	7696416	7696416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	DNAH2-102	NM_020877	exon47	c.C7462T	p.P2488S	AATATGCCCGCTA	.	116	4	78	2	.	0	0	0	0	0
FASN	2194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	80041413	80041413	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	FASN-90	NM_004104	exon31	c.T5321G	p.L1774R	TGAGAAAGGTCGA	.	100	11	60	0	.	6	4	2	0	0
LAMA1	284217	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	7025998	7025998	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	LAMA1-149	NM_005559	exon17	c.T2382C	p.P794P	GGTGAGAGGGCAG	.	21	4	23	0	.	0	0	0	0	0
ZNF236	7776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	74622686	74622686	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	ZNF236-94	NM_007345	exon16	c.C2718T	p.S906S	TTCCAGCACACTT	.	132	29	97	0	.	0	0	0	0	0
ZNF266	10781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9524367	9524367	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	ZNF266-91	NM_001271314	exon11	c.A1234C	p.K412Q	CACATTTGACACA	.	75	22	73	0	.	4	3	1	0	0
ZNF561	93134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9721627	9721627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	ZNF561-91	NM_152289	exon6	c.C710T	p.S237F	TGTGAAGAAGCTG	.	113	24	117	0	.	1	1	0	0	0
MYO9B	4650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17311587	17311587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MYO9B-67	NM_001130065	exon26	c.G4512T	p.Q1504H	CCGCCAGATCACC	.	96	25	86	0	.	9	9	0	0	0
CAD	790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27459639	27459639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	CAD-295	NM_004341	exon27	c.C4337A	p.A1446D	GGCCAGCCCCTCC	.	189	42	183	0	.	7	4	3	0	0
VWA3B	200403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	98744846	98744846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	VWA3B-139	NM_144992	exon6	c.G847T	p.D283Y	CTAAAGGATCTGA	.	74	15	78	1	.	0	0	0	0	0
BUB1	699	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	111399713	111399713	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	BUB1-1060	NM_004336	exon20	c.C2446T	p.Q816X	ATTTCTGTTTATT	.	43	5	46	0	.	1	1	0	0	0
THSD7B	80731	broad.mit.edu	37	2	138208579	138208579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	THSD7B-75	.	.	.	.	AAACTGGATCTCA	.	19	4	21	0	.	0	0	0	0	0
PECR	55825	ucsc.edu	37	2	216908665	216908665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	PECR-90	NM_018441	exon7	c.G788T	p.G263V	CGGCCCCCATCCA	.	43	5	36	0	.	15	15	0	0	0
TTI1	9675	hgsc.bcm.edu;broad.mit.edu	37	20	36612011	36612011	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	TTI1-94	NM_014657	exon9	c.A3117T	p.P1039P	GGAGTCTGGGTCC	.	50	5	36	0	.	17	8	9	0	0
EMILIN3	90187	broad.mit.edu	37	20	39993715	39993715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	EMILIN3-91	NM_052846	exon2	c.C250T	p.R84W	ACTGCCGGTATTC	.	120	4	79	0	.	0	0	0	0	0
PREX1	57580	ucsc.edu;bcgsc.ca	37	20	47271873	47271873	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	PREX1-231	NM_020820	exon19	c.C2164T	p.Q722X	GAATCTGGAAGCA	.	19	4	16	0	.	1	1	0	0	0
KCNQ2	3785	broad.mit.edu	37	20	62073832	62073832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	KCNQ2-92	NM_172106	exon5	c.T743C	p.F248S	ACCAGGAACGAGG	.	272	5	232	0	.	0	0	0	0	0
BAGE3	85318	hgsc.bcm.edu;broad.mit.edu	37	21	11097627	11097627	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	.	NM_182481	exon2	c.C35G	p.A12G	AGCTGGGCAGACA	.	84	8	66	2	.	0	0	0	0	0
UMODL1	89766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43505425	43505425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	UMODL1-93	NM_173568	exon4	c.C506T	p.S169F	TGGGCTCCTGGTA	.	181	34	147	0	.	0	0	0	0	0
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	26400727	26400727	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MYO18B-142	NM_032608	exon42	c.C6376T	p.Q2126X	AGCCTGCAGTCCT	.	102	13	87	0	.	0	0	0	0	0
MKL1	57591	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	40814880	40814880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MKL1-948	NM_020831	exon12	c.G1562A	p.R521H	TTGTCGCGCCCCT	.	98	21	100	0	.	2	2	0	0	0
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52398951	52398951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	DNAH1-67	NM_015512	exon34	c.A5434G	p.I1812V	CCCACCATCAAGG	.	100	30	93	0	.	0	0	0	0	0
SLMAP	7871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	57898917	57898917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	SLMAP-90	NM_007159	exon18	c.G1951T	p.A651S	TGGAATGCATTGG	.	98	18	107	1	.	5	4	1	0	0
GXYLT2	727936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	72957696	72957696	+	Missense_Mutation	SNP	G	G	A	rs142024018		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	.	NM_001080393	exon2	c.G454A	p.E152K	AAGCCCGAGTTTG	.	50	11	41	0	G|0.999;A|0.000	0	0	0	0	0
COL6A5	256076	broad.mit.edu	37	3	130174495	130174495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	.	NM_153264	exon37	c.G6775A	p.A2259T	GAAATTGCAAGTC	.	54	4	30	0	.	0	0	0	0	0
HTT	3064	broad.mit.edu	37	4	3124641	3124641	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	HTT-281	NM_002111	exon10	c.T1299C	p.P433P	CAGCCCTGTCCTT	.	163	3	201	0	.	1	1	0	0	0
NFXL1	152518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	47901107	47901107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	NFXL1-524	NM_152995	exon7	c.C857T	p.T286I	GTAGTTGTGACCA	.	54	10	55	0	.	0	0	0	0	0
SLC4A4	8671	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	72429512	72429512	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	SLC4A4-95	NM_001098484	exon24	c.T3102A	p.S1034S	ACAGTCTGACTGC	.	195	35	199	0	.	0	0	0	0	0
TBCK	93627	broad.mit.edu	37	4	107163639	107163639	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	TBCK-336	NM_001163436	exon12	c.C1158T	p.C386C	TAGCTGGCATAAC	.	87	3	87	0	.	0	0	0	0	0
SLC26A8	116369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	35949921	35949921	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	SLC26A8-92	NM_052961	exon8	c.G1002A	p.T334T	AATAAGCGTCTGG	.	125	19	146	0	.	0	0	0	0	0
MB21D1	115004	hgsc.bcm.edu	37	6	74161604	74161604	+	Missense_Mutation	SNP	C	C	T	rs141133909		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MB21D1-90	NM_138441	exon1	c.G301A	p.G101R	CTGCCCCAGGGGC	.	3	3	2	1	C|0.987;T|0.013	0	0	0	0	0
RBAK	57786	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	5104736	5104736	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	RBAK-653	NM_001204456	exon6	c.A1649T	p.E550V	TCAATGAGTTGTC	.	107	35	94	0	.	0	0	0	0	0
SP4	6671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	21468915	21468915	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	SP4-95	NM_003112	exon3	c.G132A	p.Q44Q	CTCTCAGCCCTCT	.	71	9	60	0	.	0	0	0	0	0
SAMD9L	219285	broad.mit.edu	37	7	92761639	92761639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	SAMD9L-94	NM_152703	exon5	c.T3646C	p.F1216L	GGAAAAAGGGAGT	.	211	3	199	0	.	4	4	0	0	0
CCDC132	55610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92932848	92932848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	CCDC132-90	NM_017667	exon17	c.A1438G	p.I480V	TTCAGCATCTTGC	.	254	48	210	0	.	2	1	1	0	0
SH2B2	10603	broad.mit.edu	37	7	101943829	101943829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	.	.	.	.	.	GGGACGGAAGCCA	.	55	13	47	1	.	0	0	0	0	0
AKR1B1	231	broad.mit.edu	37	7	134133231	134133231	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	AKR1B1-93	NM_001628	exon6	c.A567G	p.P189P	GAGATATGGGTGG	.	37	7	33	0	.	223	124	98	0	1
GPR124	25960	hgsc.bcm.edu	37	8	37698794	37698794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	GPR124-157	NM_032777	exon19	c.A2938G	p.R980G	AGGCTCAGGGGCA	.	51	3	30	0	.	3	3	0	0	0
PREX2	80243	broad.mit.edu;bcgsc.ca	37	8	69046477	69046477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	PREX2-390	NM_024870	exon32	c.T3950C	p.L1317P	GTGTTCTTTTTCA	.	115	6	82	0	.	1	1	0	0	0
FAM135B	51059	broad.mit.edu	37	8	139164987	139164987	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	FAM135B-31	NM_015912	exon13	c.G1731C	p.E577D	CCTACTCTCATGC	.	263	6	198	0	.	0	0	0	0	0
UBE2R2	54926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	33900238	33900238	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	UBE2R2-226	NM_017811	exon3	c.T331A	p.S111T	CTGCCTTCTGAAA	.	150	36	134	2	.	33	20	13	0	0
RGP1	9827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35751270	35751270	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	RGP1-23	NM_001080496	exon6	c.G495A	p.Q165Q	CCTTCAGGATGTC	.	410	87	404	0	.	0	0	0	0	0
NUP214	8021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	134020018	134020018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	NUP214-1131	NM_005085	exon12	c.G1646T	p.G549V	CCTTTGGATCATC	.	107	24	125	0	.	0	0	0	0	0
CLCN4	1183	broad.mit.edu	37	X	10162970	10162970	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	CLCN4-134	NM_001830	exon5	c.C264G	p.I88M	GGTCATCGATCTC	.	85	3	83	0	.	1	1	0	0	0
MAOB	4129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	43702915	43702915	+	Splice_Site	SNP	C	C	G	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MAOB-555	NM_000898	exon3	c.141+1G>C	.	GCCTTACCCTAAG	.	30	14	30	0	.	0	0	0	0	0
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53407985	53407985	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	SMC1A-232	NM_006306	exon23	c.T3461A	p.V1154D	TCCAGGACGAAGA	.	67	27	78	0	.	6	1	5	0	0
PRB4	5545	broad.mit.edu;bcgsc.ca	37	12	11461597	11461597	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	PRB4-91	NM_001261399	exon3	c.320delG	p.G107fs	TGGTTTCCTCCTT	.	731	106	589	0	.	0	0	0	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49443557	49443558	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MLL2-612	NM_003482	exon11	c.3813_3814del	p.1271_1272del	.	.	158	24	116	0	.	0	0	0	0	0
MGAT2	4247	broad.mit.edu	37	14	50089217	50089220	+	Frame_Shift_Del	DEL	CTAA	CTAA	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	CTAA	CTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MGAT2-90	NM_002408	exon1	c.1231_1234del	p.411_412del	GAAACTCTAACTA	.	100	8	54	0	.	0	0	0	0	0
CYFIP1	23191	broad.mit.edu	37	15	22929873	22929873	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	CYFIP1-99	NM_014608	exon6	c.547delA	p.N183fs	GTGAAGAACGACC	.	49	8	55	0	.	0	0	0	0	0
ACAA1	30	broad.mit.edu;bcgsc.ca	37	3	38167081	38167092	+	In_Frame_Del	DEL	TGAGCAGCGTGA	TGAGCAGCGTGA	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	TGAGCAGCGTGA	TGAGCAGCGTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	ACAA1-91	NM_001607	exon11	c.1163_1174del	p.388_392del	GCTCATTGAGCAG	.	90	12	93	0	.	0	0	0	0	0
GBE1	2632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	81698998	81698998	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	GBE1-25	NM_000158	exon4	c.504delT	p.G168fs	.	.	60	11	63	0	.	0	0	0	0	0
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	139193812	139193812	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	PSD2-91	NM_032289	exon4	c.879delG	p.E293fs	.	.	170	27	122	0	.	0	0	0	0	0
STAG3	10734	broad.mit.edu;bcgsc.ca	37	7	99779767	99779767	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	STAG3-543	NM_012447	exon3	c.171delT	p.N57fs	CTTGAATCGCAAT	.	67	10	76	0	.	0	0	0	0	0
LGR4	55366	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	27390335	27390336	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	LGR4-91	NM_018490	exon18	c.1935_1936insT	p.L645fs	.	.	112	21	102	0	.	0	0	0	0	0