Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 SKI 6497 hgsc.bcm.edu 37 1 2160390 2160390 + Missense_Mutation SNP C C G rs28384811 TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . SKI-838 NM_003036 exon1 c.C185G p.A62G TGCCGGCGCCGGT . 3 2 2 1 C|0.953;G|0.047 0 0 0 0 0 SRRM1 10250 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 24979017 24979017 + Missense_Mutation SNP A A T novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . SRRM1-93 NM_005839 exon7 c.A818T p.K273M AGGAGAAGACCCG . 25 7 44 0 . 68 39 29 0 0 SRRM1 10250 hgsc.bcm.edu 37 1 24993412 24993412 + Missense_Mutation SNP C C G novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . SRRM1-93 NM_005839 exon13 c.C1735G p.R579G CCACGACGAAGGT . 42 3 54 2 . 0 0 0 0 0 PEF1 553115 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 32100869 32100869 + Silent SNP T T C novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . PEF1-68 NM_012392 exon2 c.A279G p.P93P TGGAGGTGGCTGA . 93 21 126 0 . 88 43 44 0 1 AKR1A1 10327 ucsc.edu 37 1 46032694 46032694 + Splice_Site SNP T T C novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 T T . . . . Unknown Untested Somatic WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . AKR1A1-226 NM_001202413 exon5 c.356+2T>C . TTTGAGTGAGCCT . 92 2 113 0 . 6 6 0 0 0 SLC1A7 6512 broad.mit.edu 37 1 53555558 53555558 + Silent SNP G G A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . SLC1A7-155 NM_006671 exon9 c.C1275T p.A425A GAGGCCGGCCTGG . 70 3 80 0 . 0 0 0 0 0 SIPA1L2 57568 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 232650793 232650793 + Missense_Mutation SNP A A C novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . SIPA1L2-95 NM_020808 exon1 c.T293G p.L98R TCCCACAGTGCCT . 177 39 224 0 . 4 3 1 0 0 CUBN 8029 hgsc.bcm.edu;broad.mit.edu 37 10 16871011 16871011 + Missense_Mutation SNP T T A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . CUBN-166 NM_001081 exon66 c.A10557T p.R3519S TGAGCCTCTGTCT . 40 10 50 0 . 0 0 0 0 0 EPC1 80314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 32582651 32582651 + Missense_Mutation SNP C C A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . EPC1-93 NM_025209 exon3 c.G328T p.A110S GTTCAGCATCCAA . 37 11 54 0 . 0 0 0 0 0 ZNF33B 7582 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 43088537 43088537 + Missense_Mutation SNP T T G novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . ZNF33B-90 NM_006955 exon5 c.A1861C p.K621Q GTGACTTCTGGCA . 183 42 205 0 . 48 24 24 0 0 MICU1 10367 hgsc.bcm.edu 37 10 74322781 74322781 + Missense_Mutation SNP T T G novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . . NM_001195518 exon3 c.A202C p.S68R TGTCACTTTTTAG . 40 5 40 0 . 144 144 0 0 0 IFIT3 3437 broad.mit.edu 37 10 91098669 91098669 + Missense_Mutation SNP C C A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . IFIT3-90 NM_001549 exon2 c.C257A p.A86D AACATGCTGACCA . 66 3 96 0 . 42 42 0 0 0 PDE6C 5146 broad.mit.edu;bcgsc.ca 37 10 95400272 95400272 + Silent SNP G G A rs200781437 TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . PDE6C-94 NM_006204 exon13 c.G1695A p.R565R TTGGCGGCATGGG . 192 7 235 0 G|1.000;A|0.000 0 0 0 0 0 PGM2L1 283209 hgsc.bcm.edu 37 11 74085550 74085550 + Silent SNP G G A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . PGM2L1-91 NM_173582 exon2 c.C189T p.C63C CATTCGGCAACAA . 87 5 96 1 . 24 24 0 0 0 ZC3H12C 85463 broad.mit.edu;ucsc.edu 37 11 110036283 110036283 + Missense_Mutation SNP T T A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . ZC3H12C-68 NM_033390 exon6 c.T2473A p.C825S CCATACTGTGGAA . 24 4 24 0 . 29 14 15 0 0 CD27 939 hgsc.bcm.edu 37 12 6554354 6554354 + Missense_Mutation SNP C C A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . CD27-659 NM_001242 exon1 c.C93A p.H31Q GAGGCACTACTGG . 22 2 34 0 . 6 6 0 0 0 ESPL1 9700 broad.mit.edu 37 12 53687097 53687097 + Missense_Mutation SNP G G A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . ESPL1-228 NM_012291 exon31 c.G6202A p.D2068N GACCGCGACATTG . 63 3 73 0 . 7 7 0 0 0 SLC39A5 283375 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 12 56630209 56630209 + Silent SNP C C G rs139155884 byfrequency;alternate_allele TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . SLC39A5-92 NM_173596 exon9 c.C975G p.L325L GAATCTCGAAACA . 100 27 86 0 C|0.999;T|0.001 6 4 2 0 0 STAT2 6773 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 56742947 56742947 + Silent SNP C C T novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . STAT2-847 NM_005419 exon16 c.G1440A p.Q480Q CCCTACCTGAAGG . 160 41 165 0 . 0 0 0 0 0 FREM2 341640 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 39265553 39265553 + Missense_Mutation SNP A A G novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . FREM2-100 NM_207361 exon1 c.A4072G p.T1358A AAACCTACTGGTG . 98 23 97 0 . 3 2 1 0 0 TPT1 7178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 45913688 45913688 + Missense_Mutation SNP T T A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . TPT1-90 NM_003295 exon4 c.A343T p.M115L CTGTCATAAAAGG . 196 44 204 1 . 5590 4056 1532 1 1 MLNR 2862 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 49796387 49796387 + Silent SNP C C G novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . MLNR-90 NM_001507 exon2 c.C1113G p.L371L GCTGCTCGCAAGG . 85 24 119 1 . 4 3 1 0 0 APEX1 328 ucsc.edu 37 14 20925021 20925021 + Splice_Site SNP T T C novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 T T . . . . Unknown Untested Somatic WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . APEX1-661 NM_001641 exon4 c.439+2T>C . CATAGGTGAGACC . 28 1 39 0 . 0 0 0 0 0 TSC2 7249 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 2122849 2122849 + Splice_Site SNP G G A rs45517218 alternate_allele TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . TSC2-1908 NM_000548 exon21 c.2221-1G>A . TCATCAGCTTTCA . 60 29 102 0 . 0 0 0 0 0 NLRC3 197358 hgsc.bcm.edu 37 16 3598164 3598164 + Silent SNP T T C novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . NLRC3-96 NM_178844 exon16 c.A2742G p.L914L GAGCTGTAGTGCT . 9 8 10 0 . 3 3 0 0 0 TVP23C 201158 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA . 444 67 506 50 . 59 13 46 0 0 KRTAP4-9 100132386 broad.mit.edu 37 17 39261742 39261742 + Silent SNP C C T novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . . NM_001146041 exon1 c.C102T p.C34C CACCTGCTGCAGG . 56 4 41 1 . 0 0 0 0 0 RSAD1 55316 broad.mit.edu 37 17 48559512 48559512 + Silent SNP C C A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . RSAD1-90 NM_018346 exon4 c.C535A p.R179R GCTCTGCGGACGC . 131 4 167 0 . 51 51 0 0 0 TBC1D16 125058 bcgsc.ca 37 17 77915895 77915895 + Silent SNP C C A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . TBC1D16-90 NM_019020 exon11 c.G2019T p.L673L CATGGCCAGGTTT . 30 4 32 0 . 75 75 0 0 0 SLC38A10 124565 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 79220316 79220316 + Silent SNP C C T novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . SLC38A10-70 NM_001037984 exon16 c.G2400A p.Q800Q GGAGCGCTGGTTA . 45 13 53 0 . 146 60 86 0 0 ZNF532 55205 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 56587630 56587630 + Missense_Mutation SNP C C T novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . ZNF532-154 NM_018181 exon4 c.C2111T p.T704I CTTCCACTCTTCA . 80 18 74 0 . 20 12 8 0 0 CCNE1 898 hgsc.bcm.edu;broad.mit.edu 37 19 30308341 30308341 + Missense_Mutation SNP A A G novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . CCNE1-1270 NM_001238 exon6 c.A355G p.I119V TGGAAAATCATGT . 108 6 118 0 . 9 8 1 0 0 HNRNPUL1 11100 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 41800265 41800265 + Missense_Mutation SNP C C G novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . HNRNPUL1-69 NM_007040 exon9 c.C1289G p.P430R GCCTGCCTGCTGC . 69 15 89 0 . 147 94 53 0 0 DNMT3A 1788 broad.mit.edu 37 2 25469548 25469548 + Missense_Mutation SNP A A G novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . DNMT3A-1924 NM_175629 exon10 c.T1220C p.I407T CATTCAATCATGG . 123 3 150 0 . 14 14 0 0 0 SOS1 6654 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 39285904 39285904 + Nonsense_Mutation SNP C C T novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . SOS1-851 NM_005633 exon3 c.G255A p.W85X TATTGCCCATTTA . 109 33 156 0 . 16 11 5 0 0 TANC1 85461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 160086335 160086335 + Silent SNP C C A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . TANC1-92 NM_033394 exon27 c.C4398A p.P1466P TTCTCCCCAGGAA . 144 36 146 1 . 9 7 2 0 0 IRS1 3667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 227662872 227662872 + Missense_Mutation SNP C C T novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . IRS1-1272 NM_005544 exon1 c.G583A p.V195M GCTTCACGAAGCT . 93 23 86 0 . 10 7 3 0 0 ZFP64 55734 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 50769885 50769885 + Silent SNP C C T novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . ZFP64-155 NM_018197 exon6 c.G846A p.S282S CTCCCCCGAGTGC . 46 16 75 0 . 11 6 5 0 0 IFNGR2 3460 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 34799207 34799207 + Silent SNP A A T novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . IFNGR2-186 NM_005534 exon4 c.A429T p.P143P GCCTCCAGAAAAC . 297 78 372 1 . 165 104 61 0 0 MKL1 57591 broad.mit.edu 37 22 40813489 40813489 + Silent SNP G G A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . MKL1-948 NM_020831 exon13 c.C2073T p.S691S AGGCTGGGACGAG . 7 2 13 0 . 1 1 0 0 0 ALS2CL 259173 broad.mit.edu 37 3 46725271 46725271 + Splice_Site SNP C C T novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . ALS2CL-155 NM_001190707 exon10 c.912+1G>A . CACTCACCTGGCC . 235 7 327 0 . 0 0 0 0 0 SEMA5B 54437 hgsc.bcm.edu 37 3 122632248 122632248 + Missense_Mutation SNP C C G rs183401039 TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . SEMA5B-157 NM_001256347 exon17 c.G2466C p.E822D GCAGCCCTCGGGG . 17 3 10 1 C|0.993;G|0.007 0 0 0 0 0 CPNE4 131034 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 131254172 131254172 + Missense_Mutation SNP G G A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . CPNE4-92 NM_130808 exon16 c.C1541T p.A514V GGAGATGCCTGCA . 114 25 124 0 . 0 0 0 0 0 TIFA 92610 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 113199250 113199250 + Missense_Mutation SNP T T G novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . TIFA-90 NM_052864 exon2 c.A323C p.K108T TCCATTTTATTTA . 56 16 86 0 . 16 8 7 0 1 METTL14 57721 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 119631350 119631350 + Missense_Mutation SNP T T A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . METTL14-90 NM_020961 exon11 c.T1264A p.S422T GGAACTTCTGCTG . 93 16 88 0 . 22 13 9 0 0 KIAA1109 84162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 123161284 123161284 + Missense_Mutation SNP G G C novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . KIAA1109-80 NM_015312 exon27 c.G4447C p.E1483Q ATTGTAGAAGGTG . 103 23 117 0 . 28 13 15 0 0 ATG10 83734 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 81474374 81474374 + Missense_Mutation SNP C C A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . ATG10-90 NM_001131028 exon6 c.C421A p.L141I CGACTGCTACAGG . 69 15 89 1 . 25 15 10 0 0 WDR36 134430 broad.mit.edu 37 5 110428267 110428267 + Missense_Mutation SNP G G T novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . WDR36-92 NM_139281 exon1 c.G281T p.R94L TCAAGCGCCGGTT . 38 5 55 0 . 12 11 1 0 0 ARHGAP26 23092 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 142283206 142283206 + Missense_Mutation SNP G G C novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . ARHGAP26-660 NM_015071 exon8 c.G804C p.M268I CACCATGGAGGGA . 54 11 60 0 . 37 24 13 0 0 GABRB2 2561 broad.mit.edu 37 5 160753381 160753381 + Silent SNP C C G novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . GABRB2-91 NM_021911 exon10 c.G1185C p.L395L CGTATACAGAGAG . 113 4 133 0 . 0 0 0 0 0 DOCK2 1794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 169477372 169477372 + Missense_Mutation SNP G G C novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . DOCK2-97 NM_004946 exon41 c.G4184C p.G1395A CCCCGGGAGATGA . 137 32 148 0 . 49 49 0 0 0 F12 2161 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 176831305 176831305 + Missense_Mutation SNP G G A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . F12-90 NM_000505 exon9 c.C910T p.P304S GGGTCGGAGGCGC . 30 7 38 0 . 10 5 5 0 0 MAML1 9794 broad.mit.edu;bcgsc.ca 37 5 179193285 179193285 + Missense_Mutation SNP G G T novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . MAML1-848 NM_014757 exon2 c.G1274T p.G425V CCCCGGGCCAGAT . 204 8 255 0 . 33 31 2 0 0 ZBTB9 221504 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 33423041 33423041 + Missense_Mutation SNP A A G novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . ZBTB9-90 NM_152735 exon2 c.A164G p.Q55R TGGTGCAGGGCCG . 247 65 296 2 . 16 9 7 0 0 EEF1A1 1915 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 74229620 74229620 + Missense_Mutation SNP T T C rs11266800 TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . EEF1A1-226 NM_001402 exon2 c.A130G p.K44E CCTCCTTCTCAAA . 162 13 185 0 . 26 24 2 0 0 ZNF292 23036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 87964665 87964665 + Missense_Mutation SNP T T C novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . ZNF292-72 NM_015021 exon8 c.T1318C p.W440R ACTCAATGGCCCT . 38 5 53 0 . 9 5 4 0 0 HOXA4 3201 hgsc.bcm.edu 37 7 27169876 27169876 + Silent SNP C C A rs112274824 TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . HOXA4-153 NM_002141 exon1 c.G477T p.A159A GGGGGCCGCCTCG . 6 4 4 0 C|0.500;A|0.500 0 0 0 0 0 CHN2 1124 broad.mit.edu 37 7 29440319 29440319 + Missense_Mutation SNP C C A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . CHN2-229 NM_004067 exon6 c.C451A p.P151T ACTAACCCCATCT . 116 4 97 0 . 38 38 0 0 0 SEMA3A 10371 broad.mit.edu 37 7 83636753 83636753 + Missense_Mutation SNP G G C novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . SEMA3A-156 NM_006080 exon10 c.C1056G p.F352L ACCAAGGAACACC . 99 3 95 0 . 0 0 0 0 0 ANKIB1 54467 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 92019370 92019370 + Silent SNP T T C novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . ANKIB1-432 NM_019004 exon15 c.T1992C p.Y664Y TTCTTATCCATAT . 120 29 109 0 . 160 100 60 0 0 SLC26A5 375611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 103019735 103019735 + Missense_Mutation SNP A A C novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . SLC26A5-91 NM_206883 exon16 c.T1632G p.I544M ATAGTAAATTGGT . 100 34 113 0 . 0 0 0 0 0 UBE3C 9690 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 157046775 157046775 + Missense_Mutation SNP A A G novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . UBE3C-704 NM_014671 exon20 c.A2822G p.Q941R TCCGCCAGGGCCT . 60 21 59 0 . 83 34 49 0 0 PDLIM2 64236 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 22452077 22452077 + Missense_Mutation SNP C C T novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . PDLIM2-90 NM_176871 exon10 c.C1016T p.S339L GATTGTCACTGGA . 167 11 193 0 . 0 0 0 0 0 SLC7A13 157724 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 87226722 87226722 + Nonsense_Mutation SNP T T A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . SLC7A13-90 NM_138817 exon4 c.A1333T p.R445X CCAATCTTATTTT . 53 17 72 0 . 0 0 0 0 0 ZHX2 22882 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 123965936 123965936 + Missense_Mutation SNP A A C novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . ZHX2-227 NM_014943 exon3 c.A2186C p.Q729P TTCCACAATATTA . 107 27 128 0 . 36 12 24 0 0 MROH5 389690 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 142477599 142477599 + Missense_Mutation SNP G G A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . . . . . . ATGGCCGTCCAGA . 31 7 62 0 . 0 0 0 0 0 FAM83H 286077 hgsc.bcm.edu 37 8 144810122 144810122 + Silent SNP G G A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . FAM83H-92 NM_198488 exon5 c.C1509T p.D503D GTGCCCGTCGGGT . 5 4 4 1 . 7 2 5 0 0 VCP 7415 ucsc.edu 37 9 35062136 35062136 + Splice_Site SNP C C T novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . VCP-228 NM_007126 exon10 c.946-1G>A . ATGAGTCTGCCAG . 101 1 129 0 . 3 3 0 0 0 SLC28A3 64078 hgsc.bcm.edu;broad.mit.edu 37 9 86955546 86955546 + Missense_Mutation SNP C C A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . SLC28A3-94 NM_001199633 exon1 c.G3T p.M1I CAGCTCCATGCTC . 94 5 135 0 . 0 0 0 0 0 KIAA0368 23392 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 114178598 114178598 + Missense_Mutation SNP A A G novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . KIAA0368-68 NM_001080398 exon19 c.T2252C p.M751T CCGGTCATGTACT . 54 13 58 1 . 115 59 56 0 0 NOTCH1 4851 hgsc.bcm.edu 37 9 139410162 139410162 + Missense_Mutation SNP G G A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . NOTCH1-5459 NM_017617 exon11 c.C1676T p.T559M GTCCCCGTGTACC . 6 5 4 1 . 0 0 0 0 0 AKAP17A 8227 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 1718090 1718090 + Missense_Mutation SNP A A T novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . AKAP17A-40 NM_005088 exon4 c.A917T p.Q306L GGAAACAAAAGGA . 30 5 41 0 . 1 0 1 0 0 SHROOM4 57477 hgsc.bcm.edu 37 X 50350751 50350751 + Missense_Mutation SNP G G C rs201290098 TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . SHROOM4-131 NM_020717 exon6 c.C3391G p.Q1131E CCTCCTGTTGCTT . 18 2 35 0 . 6 6 0 0 0 MICU1 10367 broad.mit.edu 37 10 74322786 74322786 + Frame_Shift_Del DEL A A - novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . . NM_001195518 exon3 c.197delT p.L66fs CTTTTTAGGTTGT . 36 7 40 0 . 0 0 0 0 0 AMOTL1 154810 broad.mit.edu 37 11 94602565 94602565 + Frame_Shift_Del DEL C C - novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . AMOTL1-91 NM_130847 exon12 c.2691delC p.G897fs CCGCGGCCGGCTG . 7 3 12 0 . 0 0 0 0 0 DENR 8562 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 123253468 123253468 + Frame_Shift_Del DEL G G - novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . . NM_003677 exon7 c.552delG p.E184fs . . 54 16 60 0 . 0 0 0 0 0 LRP2 4036 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 170034511 170034513 + In_Frame_Del DEL GAT GAT - novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 GAT GAT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . LRP2-175 NM_004525 exon53 c.10193_10195del p.3398_3399del . . 58 12 63 0 . 0 0 0 0 0 ZNF318 24149 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 43333130 43333130 + Frame_Shift_Del DEL T T - novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . ZNF318-157 NM_014345 exon2 c.448delA p.I150fs . . 73 25 85 0 . 0 0 0 0 0 IFIT5 24138 broad.mit.edu;bcgsc.ca 37 10 91178386 91178387 + Frame_Shift_Ins INS - - GCTC novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . IFIT5-90 NM_012420 exon2 c.1430_1431insGCTC p.E477fs TCTGTGAGCTCCG . 106 11 119 0 . 0 0 0 0 0 SNORD97 692223 hgsc.bcm.edu;bcgsc.ca 37 11 10823073 10823074 + RNA INS - - A novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . . . . . . . . 110 32 119 0 . 0 0 0 0 0 OR4N5 390437 bcgsc.ca 37 14 20612342 20612343 + Frame_Shift_Ins INS - - T novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 - - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . OR4N5-69 NM_001004724 exon1 c.448_449insT p.L150fs CTGTGGCTTGGGG . 265 29 326 28 . 0 0 0 0 0 SUCNR1 56670 broad.mit.edu 37 3 151599109 151599110 + Frame_Shift_Ins INS - - T novel TCGA-BQ-5884-01A-11D-1589-08 TCGA-BQ-5884-11A-01D-1589-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4f2fe918-229b-4e08-a866-96bb1c6fc7d9 9f67477d-e1e3-4aa5-9789-db50e9359ddd . SUCNR1-711 NM_033050 exon3 c.778_779insT p.L260fs TCACGCCTGGGGA . 244 13 286 0 . 0 0 0 0 0