Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CEP85	64793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	26603078	26603078	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	CEP85-90	NM_022778	exon13	c.A1955T	p.H652L	AGGAACACCTGCG	.	38	23	73	2	.	4	0	4	0	0
OSCP1	127700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	36915923	36915923	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	OSCP1-4	NM_145047	exon1	c.G48A	p.E16E	AAGCATCTCCCCG	.	93	35	88	1	.	5	3	2	0	0
LRRC41	10489	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	46751890	46751890	+	Silent	SNP	T	T	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	LRRC41-156	NM_006369	exon4	c.A639C	p.S213S	CCGAAGTGACTGC	.	62	20	69	1	.	19	12	7	0	0
CYB5RL	606495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	54640395	54640395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	.	NM_001031672	exon8	c.G845A	p.R282K	GGCTTTCTCCGAC	.	42	17	53	1	.	1	1	0	0	0
KIAA1324	57535	broad.mit.edu;bcgsc.ca	37	1	109735396	109735396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	KIAA1324-157	NM_020775	exon14	c.G1847T	p.G616V	ATTCAGGAACCTG	.	192	74	256	1	.	0	0	0	0	0
ARNT	405	bcgsc.ca	37	1	150804346	150804346	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ARNT-1085	NM_001668	exon10	c.T903C	p.P301P	GAAGTGAGGTTCC	.	96	5	99	2	.	2	2	0	0	0
NCSTN	23385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160326495	160326495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	NCSTN-658	NM_015331	exon15	c.C1745T	p.T582I	ACCTCACCCGAGA	.	119	32	118	2	.	67	40	27	0	0
FAM129A	116496	broad.mit.edu	37	1	184943459	184943459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	FAM129A-94	NM_052966	exon1	c.C30A	p.D10E	GCCCTCGTCCAGC	.	11	4	11	0	.	0	0	0	0	0
HEATR1	55127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	236738095	236738095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	HEATR1-93	NM_018072	exon23	c.G3193A	p.G1065R	ACTTTCCCAGAGT	.	108	43	117	0	.	1	1	0	0	0
HEATR1	55127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	236749736	236749736	+	Missense_Mutation	SNP	T	T	C	rs149170515		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	HEATR1-93	NM_018072	exon15	c.A1732G	p.I578V	CGGCTATCTTAAG	.	156	50	170	0	T|1.000;C|0.000	0	0	0	0	0
FMN2	56776	hgsc.bcm.edu	37	1	240256171	240256171	+	Silent	SNP	G	G	A	rs142232913		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	FMN2-145	NM_020066	exon1	c.G762A	p.L254L	CCTGCTGGGGCCG	.	5	3	2	1	G|0.994;A|0.006	0	0	0	0	0
OR2M3	127062	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	248366486	248366486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	OR2M3-70	NM_001004689	exon1	c.C117A	p.F39L	GGCCTTCATGGGA	.	639	61	634	0	.	0	0	0	0	0
ITGA8	8516	broad.mit.edu	37	10	15713632	15713632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ITGA8-230	NM_003638	exon8	c.G817T	p.A273S	CCCCAGCAGCAAC	.	69	3	98	1	.	0	0	0	0	0
TBATA	219793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	72537063	72537063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	.	NM_152710	exon7	c.A536G	p.E179G	CCCTGCTCCCGCA	.	76	22	91	2	.	0	0	0	0	0
USP54	159195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	75294429	75294429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	USP54-721	NM_152586	exon10	c.C1244T	p.S415F	TCAGAAGAGAAGT	.	89	31	100	0	.	0	0	0	0	0
PI4K2A	55361	hgsc.bcm.edu;broad.mit.edu	37	10	99400806	99400806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PI4K2A-226	NM_018425	exon1	c.G307A	p.E103K	CGGAACGAGTTCC	.	17	6	40	0	.	0	0	0	0	0
GBF1	8729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104130513	104130513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	GBF1-91	NM_001199378	exon29	c.C3556A	p.L1186I	TACCACCTCTGTG	.	179	62	239	0	.	4	3	1	0	0
CNNM2	54805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104679308	104679308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	CNNM2-515	NM_199076	exon1	c.G1071T	p.E357D	CGGAGAGATCGTG	.	125	42	129	0	.	0	0	0	0	0
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	108412294	108412294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SORCS1-153	NM_001206572	exon18	c.C2321T	p.S774F	TTATTGGAAACCA	.	116	37	137	0	.	0	0	0	0	0
MMP21	118856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	127455494	127455494	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	MMP21-228	NM_147191	exon7	c.A1447C	p.N483H	AAGAATTAAGTAC	.	98	27	120	0	.	0	0	0	0	0
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	601639	601639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PHRF1-22	NM_020901	exon10	c.T1090C	p.S364P	AAGAGCTCAGCGA	.	59	29	70	0	.	6	4	2	0	0
MUC6	4588	broad.mit.edu	37	11	1027279	1027279	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	MUC6-23	NM_005961	exon17	c.C2220T	p.N740N	GATGCCGTTGATG	.	247	6	254	0	.	0	0	0	0	0
FAU	2197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64888258	64888258	+	Missense_Mutation	SNP	C	C	A	rs3202210	alternate_allele	TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	FAU-90	NM_001997	exon5	c.G297T	p.K99N	CTTCTTCTTCTTC	.	220	80	254	0	.	3553	1975	1570	1	1
DPP3	10072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66260242	66260242	+	Silent	SNP	G	G	A	rs200674271		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	DPP3-46	NM_130443	exon10	c.G1044A	p.A348A	GGTGGCGAGCGCA	.	149	64	145	0	.	4	1	3	0	0
FOLR2	2350	hgsc.bcm.edu	37	11	71932098	71932098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	FOLR2-290	NM_001113535	exon3	c.A335G	p.Q112R	GGATCCAGCAGGT	.	22	2	26	0	.	0	0	0	0	0
DGAT2	84649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	75509461	75509461	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	DGAT2-226	NM_032564	exon7	c.C999T	p.P333P	CAAGCCCATCACC	.	51	17	58	0	.	0	0	0	0	0
AMOTL1	154810	broad.mit.edu	37	11	94592756	94592756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	AMOTL1-91	NM_130847	exon9	c.C2011T	p.R671W	CTTGTGCGGGAGA	.	50	4	41	1	.	0	0	0	0	0
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	99690367	99690367	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	CNTN5-366	NM_001243270	exon3	c.A148C	p.T50P	TCCAAAACCAGAC	.	107	13	164	0	.	0	0	0	0	0
BCL9L	283149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118771686	118771686	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	BCL9L-229	NM_182557	exon6	c.T2766G	p.N922K	CATCTGATTAATA	.	70	19	92	0	.	6	3	3	0	0
OR8D1	283159	broad.mit.edu	37	11	124179984	124179984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	OR8D1-71	NM_001002917	exon1	c.C679A	p.H227N	GGATGTGAAGGAT	.	40	3	45	0	.	0	0	0	0	0
OR8B8	26493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	124310919	124310919	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	OR8B8-69	NM_012378	exon1	c.G63A	p.P21P	GACTCCCGGTTGG	.	76	28	113	0	.	0	0	0	0	0
C3AR1	719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	8212439	8212439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	C3AR1-227	NM_004054	exon2	c.G343A	p.A115T	TAATGGCAGTAAG	.	80	22	73	0	.	4	4	0	0	0
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	31586145	31586145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	DENND5B-24	NM_144973	exon8	c.A2050G	p.K684E	GTTCTTTCCTGCG	.	190	50	240	1	.	1	0	1	0	0
ATF7	11016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53931334	53931334	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ATF7-455	NM_001130060	exon5	c.T267A	p.A89A	AGCAGCAGCCTGT	.	49	16	59	0	.	0	0	0	0	0
PRIM1	5557	hgsc.bcm.edu	37	12	57135252	57135252	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	.	NM_000946	exon9	c.C949G	p.L317V	TCTTCAGTAGATG	.	59	3	72	0	.	3	3	0	0	0
SRGAP1	57522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	64521913	64521913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SRGAP1-653	NM_020762	exon21	c.C2813A	p.S938Y	GAAGGTCCACGTC	.	43	12	46	0	.	5	1	4	0	0
EID3	493861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	104698219	104698219	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	.	NM_001008394	exon1	c.T507A	p.H169Q	ATTCCATTTTGTT	.	282	113	355	0	.	6	4	2	0	0
DTX1	1840	hgsc.bcm.edu	37	12	113515832	113515832	+	Missense_Mutation	SNP	C	C	A	rs190645916		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	DTX1-659	NM_004416	exon2	c.C863A	p.T288N	CGCGCACCCCGGG	.	4	3	0	0	C|0.992;A|0.008	0	0	0	0	0
SLC15A4	121260	bcgsc.ca	37	12	129278885	129278885	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SLC15A4-90	NM_145648	exon8	c.C1590G	p.C530W	CAAATAGCAGCCG	.	67	19	94	9	.	19	19	0	0	0
FLT1	2321	broad.mit.edu;bcgsc.ca	37	13	29001983	29001983	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	FLT1-1406	NM_002019	exon9	c.C1182T	p.D394D	AGTTACGTCCTTG	.	147	6	152	0	.	0	0	0	0	0
ARHGEF7	8874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	111885553	111885553	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ARHGEF7-232	NM_001113511	exon7	c.G735A	p.E245E	TTCAGAGAAGCCT	.	132	76	192	1	.	0	0	0	0	0
SAV1	60485	hgsc.bcm.edu	37	14	51131903	51131903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SAV1-658	NM_021818	exon2	c.G529A	p.A177T	CTGAAGCATGCCT	.	128	54	231	0	.	2	0	2	0	0
MIR626	693211	ucsc.edu;bcgsc.ca	37	15	41983867	41983867	+	RNA	SNP	T	T	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	.	.	.	.	.	TCAATTTTAAAGG	.	89	35	99	0	.	2	2	0	0	0
IL4R	3566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27374876	27374876	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	IL4R-227	NM_000418	exon11	c.C2203T	p.Q735X	GGTGGCCAGACCC	.	137	35	130	1	.	7	3	4	0	0
CNEP1R1	255919	broad.mit.edu	37	16	50059600	50059600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	.	NM_153261	exon2	c.G64A	p.G22S	GTTTCCGGTAACT	.	65	4	62	0	.	1	1	0	0	0
NKD1	85407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	50667463	50667463	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	NKD1-226	NM_033119	exon10	c.C1184G	p.A395G	CCCTAGCCCCCCT	.	32	11	34	0	.	0	0	0	0	0
TRPV3	162514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3458126	3458126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TRPV3-94	NM_001258205	exon2	c.G19A	p.E7K	CCATCTCCTTGGG	.	80	25	73	0	.	0	0	0	0	0
COX10	1352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	13977738	13977738	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	COX10-226	NM_001303	exon2	c.A142C	p.I48L	CAGTGGATTACAT	.	324	115	383	1	.	14	8	6	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274343	39274343	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	.	NM_033059	exon1	c.T225C	p.C75C	GGGGCGACAGCAG	.	95	3	96	0	.	1	1	0	0	0
KRT13	3860	broad.mit.edu	37	17	39658760	39658760	+	Silent	SNP	G	G	A	rs147022064	alternate_allele	TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	KRT13-95	NM_002274	exon6	c.C1110T	p.I370I	GGCCTCGATGCTG	.	307	6	307	0	G|1.000;T|0.000	0	0	0	0	0
TBX4	9496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	59544913	59544913	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TBX4-227	NM_018488	exon4	c.G444C	p.L148L	AAGGCTGTATGTC	.	78	25	89	1	.	0	0	0	0	0
TEX19	400629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80320426	80320426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TEX19-90	NM_207459	exon2	c.C400A	p.L134M	CTGGGCCTGGGCC	.	202	78	178	0	.	0	0	0	0	0
POTEC	388468	broad.mit.edu	37	18	14542693	14542693	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	POTEC-3	NM_001137671	exon1	c.G453A	p.K151K	GGGGACCTTACCC	.	214	7	207	1	.	1	1	0	0	0
PSMA8	143471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	23731852	23731852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PSMA8-91	NM_144662	exon3	c.A278G	p.N93S	TAATAAACAGAGC	.	116	39	130	0	.	0	0	0	0	0
ZNF57	126295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2917763	2917763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ZNF57-71	NM_173480	exon4	c.C1144T	p.H382Y	AGAGAACATGTGA	.	134	52	156	0	.	6	2	4	0	0
ZNF846	162993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9868191	9868191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ZNF846-23	NM_001077624	exon6	c.T1562C	p.L521P	TTAGCAAGTGCTG	.	279	100	317	0	.	7	2	5	0	0
UNC13A	23025	broad.mit.edu	37	19	17778940	17778940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	UNC13A-25	NM_001080421	exon6	c.C454T	p.R152W	GGTCCCGCATAGC	.	50	3	43	0	.	0	0	0	0	0
GATAD2A	54815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	19603133	19603133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	GATAD2A-90	NM_017660	exon3	c.G288T	p.R96S	CGAGAGGAGACCC	.	17	9	15	0	.	4	1	3	0	0
C19orf40	91442	broad.mit.edu	37	19	33467343	33467343	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	C19orf40-90	NM_152266	exon5	c.G403C	p.E135Q	GTTCAAGAGCAAA	.	150	3	160	0	.	0	0	0	0	0
PAK4	10298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39667267	39667267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PAK4-957	NM_001014832	exon7	c.G1397T	p.S466I	AGGTGAGCAAGGA	.	225	94	367	0	.	34	12	22	0	0
CAD	790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27440797	27440797	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	CAD-295	NM_004341	exon2	c.C135A	p.Y45X	CTCCTACAAGGCA	.	143	54	189	0	.	0	0	0	0	0
MAP4K3	8491	bcgsc.ca	37	2	39526944	39526944	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	MAP4K3-550	NM_003618	exon17	c.1120-2A>G	.	AGATCCTAATAGT	.	42	4	63	0	.	0	0	0	0	0
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	73680677	73680677	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ALMS1-142	NM_015120	exon8	c.T7020C	p.N2340N	GACGAATTTGAAA	.	71	14	80	0	.	1	1	0	0	0
SEMA4F	10505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74902749	74902749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SEMA4F-93	NM_004263	exon11	c.G1470A	p.M490I	GAACATGAAATTG	.	134	40	123	0	.	0	0	0	0	0
TBC1D8	11138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	101670697	101670697	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TBC1D8-25	NM_001102426	exon4	c.C459T	p.F153F	CTCGGGGAAGTTG	.	18	12	20	0	.	5	0	5	0	0
TMEM177	80775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	120439354	120439354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TMEM177-91	NM_030577	exon2	c.G925A	p.G309S	AATCCGGGCCGCT	.	129	44	139	0	.	15	11	4	0	0
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	141819633	141819633	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	LRP1B-311	NM_018557	exon8	c.T1223A	p.I408N	CCTTGAATGACAG	.	212	76	201	0	.	0	0	0	0	0
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170083080	170083080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	LRP2-175	NM_004525	exon32	c.T5246C	p.I1749T	ACAGTTATTAAGA	.	119	26	105	0	.	4	3	1	0	0
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	225422516	225422516	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	CUL3-229	NM_001257198	exon2	c.C142T	p.Q48X	TTTCTTGAATTGC	.	99	53	81	0	.	4	0	4	0	0
USP40	55230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234449396	234449396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	USP40-455	NM_018218	exon9	c.C1115A	p.P372H	TCAACAGGAATTA	.	248	111	254	2	.	3	0	3	0	0
TRPM8	79054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234847784	234847784	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TRPM8-94	NM_024080	exon5	c.T491A	p.I164N	GCAAGATCTTCAG	.	82	32	64	0	.	0	0	0	0	0
SIRPB1	10326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	1551504	1551504	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SIRPB1-91	NM_006065	exon4	c.A1031T	p.Y344F	AGGGCATAGCTTT	.	201	78	274	0	.	0	0	0	0	0
LZTS3	0	broad.mit.edu	37	20	3146663	3146663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	.	NM_014731	exon2	c.C803T	p.S268L	TAGCCCGACCCCC	.	51	4	62	0	.	13	13	0	0	0
GFRA4	64096	hgsc.bcm.edu	37	20	3641291	3641291	+	Silent	SNP	A	A	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	GFRA4-90	NM_145762	exon3	c.T609G	p.P203P	GTAGTTAGGGGTG	.	7	5	3	2	.	0	0	0	0	0
FRG1B	284802	broad.mit.edu	37	20	29625905	29625905	+	RNA	SNP	T	T	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	FRG1B-22	.	.	.	.	AATATCTTGGTAT	.	148	8	165	1	.	85	85	0	0	0
PLCG1	5335	hgsc.bcm.edu	37	20	39796566	39796566	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PLCG1-911	NM_182811	exon20	c.C2376G	p.F792L	AACTTTCAAGGTA	.	50	3	61	0	.	0	0	0	0	0
SLMO2	51012	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57613690	57613690	+	Splice_Site	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SLMO2-45	NM_016045	exon3	c.33-1G>A	.	GGGTGGCTGCCGA	.	137	54	166	0	.	1	0	1	0	0
SF3A1	10291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30737847	30737847	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SF3A1-157	NM_005877	exon7	c.A905T	p.E302V	AGCTCCTCTGGCG	.	104	31	113	0	.	9	6	3	0	0
APOBEC3G	60489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	39482535	39482535	+	Silent	SNP	C	C	G	rs138907659	alternate_allele	TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	APOBEC3G-227	NM_021822	exon6	c.C987G	p.A329A	CCTGGCCGAGGCT	.	206	59	319	0	C|1.000;T|0.000	40	27	13	0	0
L3MBTL2	83746	ucsc.edu	37	22	41621938	41621938	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	L3MBTL2-92	NM_031488	exon12	c.G1497A	p.P499P	CACACCGCCAAAA	.	41	4	59	1	.	0	0	0	0	0
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	46804928	46804928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	CELSR1-525	NM_014246	exon9	c.G5191A	p.A1731T	TGGTGGCCTCCAT	.	33	9	39	0	.	6	1	5	0	0
KLHDC7B	113730	hgsc.bcm.edu	37	22	50987534	50987534	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	KLHDC7B-90	NM_138433	exon1	c.T939C	p.P313P	GGCCCCTGTGTCC	.	96	5	102	0	.	0	0	0	0	0
ATP2B2	491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	10387742	10387742	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ATP2B2-95	NM_001001331	exon17	c.C2484T	p.L828L	CTTCTTGAGTGCA	.	67	17	72	0	.	0	0	0	0	0
CCBP2	1238	broad.mit.edu	37	3	42906259	42906259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	CCBP2-659	NM_001296	exon3	c.G265A	p.A89T	AATCTGGCCATCT	.	266	4	316	2	.	0	0	0	0	0
FYCO1	79443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	46009968	46009968	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	FYCO1-91	NM_024513	exon8	c.G858A	p.E286E	GTTGTCCTCCGCT	.	91	20	115	0	.	1	1	0	0	0
CCR5	1234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	46415150	46415150	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	CCR5-993	NM_000579	exon3	c.A757T	p.I253F	TACAACATTGTCC	.	556	164	688	0	.	0	0	0	0	0
MST1	4485	broad.mit.edu	37	3	49726048	49726048	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	MST1-278	NM_020998	exon1	c.A77T	p.Q26L	AAGCATTGAGTCA	.	36	3	47	0	.	28	28	0	0	0
QTRTD1	79691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113798773	113798773	+	Missense_Mutation	SNP	G	G	A	rs199551955		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	QTRTD1-91	NM_001256835	exon7	c.G803A	p.R268Q	TTAGTCGGCCAGA	.	280	111	320	0	.	4	1	3	0	0
ZBBX	79740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	167083714	167083714	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ZBBX-92	NM_024687	exon6	c.A233C	p.Q78P	TATGATTGATTGA	.	108	39	134	0	.	0	0	0	0	0
TNFSF10	8743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	172224404	172224404	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TNFSF10-662	NM_003810	exon5	c.A724T	p.I242F	GATAGATGGAATA	.	176	60	171	0	.	44	13	31	0	0
SDAD1	55153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76877179	76877179	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SDAD1-91	NM_018115	exon21	c.G1965A	p.R655R	GCTATACCGCATC	.	311	101	392	0	.	42	18	24	0	0
ADAD1	132612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	123336554	123336554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ADAD1-90	NM_139243	exon11	c.A1270G	p.T424A	AGTGATACCAGAG	.	125	10	171	1	.	0	0	0	0	0
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	125592787	125592787	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ANKRD50-90	NM_020337	exon4	c.T1645C	p.L549L	TAGCCAATAATGT	.	214	22	248	1	.	1	1	0	0	0
PLK4	10733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	128804442	128804442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PLK4-333	NM_014264	exon3	c.C152T	p.A51V	ACAAAGCAGGAAT	.	48	13	53	0	.	0	0	0	0	0
LRBA	987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	151829520	151829520	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	LRBA-157	NM_006726	exon11	c.C1459T	p.Q487X	AATATTGCCTGTA	.	93	31	115	0	.	0	0	0	0	0
GOLPH3	64083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	32126417	32126417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	GOLPH3-227	NM_022130	exon4	c.G798T	p.K266N	CACTCTCTTGGTA	.	142	33	155	0	.	15	14	1	0	0
GPBP1	65056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	56545332	56545332	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	GPBP1-135	NM_001127236	exon8	c.T922G	p.F308V	AGTGAATTTTTGA	.	107	32	95	0	.	35	21	14	0	0
TRIM23	373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	64905230	64905230	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TRIM23-230	NM_033228	exon6	c.T884A	p.L295Q	TCATGTAGATCAT	.	75	25	113	1	.	0	0	0	0	0
CD180	4064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	66478708	66478708	+	Silent	SNP	T	T	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	CD180-91	NM_005582	exon3	c.A1963C	p.R655R	TCCACCTGAGAAG	.	51	18	84	0	.	0	0	0	0	0
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	96328816	96328816	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	LNPEP-229	NM_005575	exon5	c.T1229A	p.I410N	TTGAAATTCAGTA	.	112	46	130	0	.	2	0	2	0	0
TRIM36	55521	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	114469835	114469835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TRIM36-725	NM_018700	exon8	c.T1256C	p.V419A	TCTGGCACGTCTA	.	41	12	67	0	.	0	0	0	0	0
PCDHA9	9752	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140228538	140228538	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PCDHA9-138	NM_031857	exon1	c.C458A	p.P153Q	GGTTTCCACTAGA	.	194	45	189	0	.	0	0	0	0	0
PCDHGA9	56107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140784720	140784720	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	.	NM_032089	exon1	c.G2201C	p.G734A	TGGCTGGTGTGCC	.	79	24	91	1	.	0	0	0	0	0
PCDHGC3	5098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140856636	140856636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PCDHGC3-24	NM_032402	exon1	c.A953G	p.H318R	AACTCCATGAGAT	.	102	35	104	1	.	0	0	0	0	0
DDX39B	7919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31507042	31507042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	DDX39B-92	NM_004640	exon3	c.A221G	p.E74G	ATGCACTCATGCT	.	114	48	146	0	.	0	0	0	0	0
NOTCH4	4855	broad.mit.edu	37	6	32188966	32188966	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	NOTCH4-1321	NM_004557	exon4	c.C588T	p.N196N	GCACTCGTTGACA	.	80	4	94	0	.	0	0	0	0	0
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	56347659	56347659	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	DST-523	NM_015548	exon70	c.T13355C	p.L4452S	TTCCCCAACTCTT	.	63	22	79	0	.	4	4	0	0	0
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	106992678	106992678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	AIM1-139	NM_001624	exon11	c.C3958A	p.H1320N	AATGCTCACATGA	.	88	28	92	1	.	0	0	0	0	0
SLC35D3	340146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	137243696	137243696	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SLC35D3-91	NM_001008783	exon1	c.G130C	p.V44L	ACCCTGGTGCAGT	.	50	17	61	0	.	0	0	0	0	0
TAX1BP1	8887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	27856087	27856087	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TAX1BP1-153	NM_006024	exon14	c.T1884C	p.N628N	GTCAAATGCACAA	.	298	100	347	0	.	27	13	14	0	0
ZNF679	168417	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	63721262	63721262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ZNF679-1	NM_153363	exon4	c.G217A	p.E73K	AATAAAGAGCCTT	.	56	24	70	0	.	0	0	0	0	0
TPST1	8460	hgsc.bcm.edu	37	7	65705943	65705943	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TPST1-90	NM_003596	exon2	c.C531G	p.A177A	CAATGCCAAATTT	.	82	10	115	0	.	3	3	0	0	0
AKAP9	10142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	91631868	91631868	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	AKAP9-755	NM_005751	exon8	c.A2637G	p.E879E	TTTAGAAGACAGT	.	75	21	98	0	.	2	2	0	0	0
PEX1	5189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92119227	92119227	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PEX1-91	NM_000466	exon23	c.3439-2A>G	.	GAGCTCTGCATGG	.	48	21	63	0	.	5	1	4	0	0
LMTK2	22853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	97823720	97823720	+	Missense_Mutation	SNP	G	G	C	rs199600469		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	LMTK2-1381	NM_014916	exon11	c.G3943C	p.E1315Q	GAGACCGAGCACC	.	145	47	152	1	G|0.999;C|0.000	0	0	0	0	0
SND1-IT1	27099	ucsc.edu;bcgsc.ca	37	7	127637844	127637844	+	RNA	SNP	C	C	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	.	.	.	.	.	GTTTCTCCCATCT	.	301	92	317	0	.	0	0	0	0	0
MGAM	8972	hgsc.bcm.edu	37	7	141759733	141759733	+	Silent	SNP	A	A	G	rs73740235		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	MGAM-70	NM_004668	exon33	c.A4026G	p.K1342K	CATCAAATACCCA	.	30	2	28	0	A|0.500;G|0.500	0	0	0	0	0
SLC7A2	6542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	17401959	17401959	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SLC7A2-93	NM_001008539	exon3	c.377-1G>T	.	TGGGAAGGTACAT	.	127	41	142	0	.	0	0	0	0	0
EBF2	64641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	25715868	25715868	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	EBF2-26	NM_022659	exon14	c.C1495T	p.L499L	CATTTAGAAATCC	.	74	24	120	0	.	0	0	0	0	0
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	48826505	48826505	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PRKDC-1515	.	.	.	.	TGACTCGAGGCAG	.	187	58	207	0	.	0	0	0	0	0
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu	37	8	71126196	71126196	+	Silent	SNP	A	A	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	NCOA2-639	NM_006540	exon4	c.T201G	p.P67P	TTTGTCAGGTTTG	.	46	15	44	0	.	3	0	3	0	0
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133854952	133854952	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PHF20L1-92	NM_016018	exon19	c.G2580C	p.E860D	AAGTGAGCATAGC	.	104	49	86	0	.	10	5	5	0	0
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144944250	144944250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	EPPK1-25	NM_031308	exon1	c.C3172A	p.L1058I	TGGGGAGGTGGTG	.	22	6	20	0	.	1	0	1	0	0
ARHGAP39	80728	hgsc.bcm.edu;broad.mit.edu	37	8	145806407	145806407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ARHGAP39-90	NM_025251	exon4	c.A335G	p.N112S	TCCGTGTTCTGCT	.	16	7	9	0	.	0	0	0	0	0
SMC5	23137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	72901129	72901129	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SMC5-229	NM_015110	exon8	c.A995T	p.K332M	ATATTAAGGAGGC	.	104	37	167	0	.	4	1	3	0	0
PAPPA	5069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	118997553	118997553	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PAPPA-77	NM_002581	exon7	c.C2369G	p.P790R	TCTACCCCTTGGT	.	85	31	110	0	.	0	0	0	0	0
RLIM	51132	bcgsc.ca	37	X	73811737	73811737	+	Silent	SNP	T	T	A	rs113198776		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	RLIM-228	NM_183353	exon5	c.A1413T	p.S471S	GGAACTTGAACTG	.	35	12	40	2	.	2	1	0	1	0
RLIM	51132	bcgsc.ca	37	X	73811739	73811739	+	Missense_Mutation	SNP	A	A	G	rs201164156		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	RLIM-228	NM_183353	exon5	c.T1411C	p.S471P	AACTTGAACTGGA	.	35	12	37	2	.	1	1	0	0	0
KLHL4	56062	bcgsc.ca	37	X	86887410	86887410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	KLHL4-133	NM_019117	exon7	c.A1525G	p.M509V	CCTCCCATGTCAA	.	14	8	25	0	.	0	0	0	0	0
AGTR2	186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	115303624	115303624	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	AGTR2-565	NM_000686	exon3	c.T91G	p.S31A	AATGAGTCTACCT	.	98	63	104	0	.	0	0	0	0	0
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	64960365	64960365	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	JMJD1C-275	NM_032776	exon11	c.5147delT	p.L1716fs	.	.	89	32	91	0	.	0	0	0	0	0
TMTC3	160418	broad.mit.edu	37	12	88566417	88566417	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TMTC3-91	NM_181783	exon8	c.1094delT	p.L365fs	CGAACCTTTTTTT	.	243	8	256	0	.	0	0	0	0	0
USP34	9736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	61505306	61505306	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	USP34-579	NM_014709	exon41	c.5427delA	p.E1809fs	.	.	38	12	69	0	.	0	0	0	0	0
EPHA4	2043	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	222365873	222365873	+	Nonsense_Mutation	DEL	G	G	-	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	EPHA4-1441	NM_004438	exon4	c.843delC	p.Y281X	.	.	92	57	65	0	.	0	0	0	0	0
ZNF502	91392	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	44762384	44762384	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ZNF502-90	NM_001134440	exon4	c.75delG	p.K25fs	.	.	115	33	142	0	.	0	0	0	0	0
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	187540288	187540291	+	Frame_Shift_Del	DEL	TCCA	TCCA	-	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	TCCA	TCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	FAT1-34	NM_005245	exon10	c.7449_7452del	p.2483_2484del	.	.	385	90	443	0	.	0	0	0	0	0
TPST1	8460	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	65705943	65705964	+	Frame_Shift_Del	DEL	CAAATTTCTCCTGATGGTCCGA	CAAATTTCTCCTGATGGTCCGA	-	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	CAAATTTCTCCTGATGGTCCGA	CAAATTTCTCCTGATGGTCCGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TPST1-90	NM_003596	exon2	c.531_552del	p.177_184del	.	.	90	20	117	0	.	0	0	0	0	0
DMTF1	9988	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	86802963	86802966	+	In_Frame_Del	DEL	AAGG	AAGG	-	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	AAGG	AAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	DMTF1-91	NM_001142327	exon6	c.440_442del	p.147_148del	.	.	53	12	74	0	.	0	0	0	0	0
ADAMDEC1	27299	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	24256052	24256052	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ADAMDEC1-228	NM_014479	exon8	c.750delC	p.N250fs	.	.	165	55	186	0	.	0	0	0	0	0
SYBU	55638	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	110587763	110587763	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SYBU-227	NM_001099752	exon8	c.1364delA	p.D455fs	.	.	122	40	109	0	.	0	0	0	0	0
KLHL4	56062	broad.mit.edu;bcgsc.ca	37	X	86887393	86887404	+	In_Frame_Del	DEL	GGACTGTGATGC	GGACTGTGATGC	-	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	GGACTGTGATGC	GGACTGTGATGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	KLHL4-133	NM_019117	exon7	c.1508_1519del	p.503_507del	AAATCTGGACTGT	.	15	6	34	0	.	0	0	0	0	0
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	31586129	31586130	+	In_Frame_Ins	INS	-	-	GGCGAA	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	DENND5B-24	NM_144973	exon8	c.2066_2067insTTCGCC	p.Q689delinsLRQ	.	.	195	33	254	0	.	0	0	0	0	0
YLPM1	56252	bcgsc.ca	37	14	75230946	75230947	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	YLPM1-71	NM_019589	exon1	c.754_755insC	p.A252fs	CCGTCCGCCCCCC	.	27	7	56	1	.	0	0	0	0	0
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	18841596	18841597	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SMG1		exon52	c.G8887A	p.A2963K	CGAATGCTACCAA	.	47.0	21.0	49.0	0.0	.	0	0	0	0	0
FMO4	2329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	171303821	171303822	+	Missense_Mutation	DNP	AT	AT	GC	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	FMO4		exon8	c.T1100C	p.I367A	TAGCCATCATCGG	.	136.0	43.0	171.0	0.0	.	0	0	0	0	0
RTN4	57142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55253513	55253514	+	Missense_Mutation	DNP	TT	TT	AG	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	RTN4		exon3	c.A1721C	p.E574A	TTTGTTTCATAAG	.	132.0	33.0	165.0	0.0	.	0	0	0	0	0
OTOP1	133060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	4199006	4199007	+	Missense_Mutation	DNP	TC	TC	CT	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	OTOP1		exon5	c.G1554A	p.S519G	GCTGCTCTCCTCC	.	96.0	27.0	117.0	0.0	.	0	0	0	0	0
KRT77	374454	hgsc.bcm.edu	37	12	53086340	53086341	+	Missense_Mutation	DNP	AG	AG	CA	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	KRT77		exon7	c.C1291T	p.L431W	CCTCCAGGTCCTG	.	44.0	4.0	40.0	1.0	G|0.996;T|0.004	0	0	0	0	0