Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 PEX10 5192 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 2340282 2340282 + Missense_Mutation SNP C C G novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . PEX10-90 NM_002617 exon3 c.G209C p.G70A TCCTCCCCCAGGG . 58 14 54 0 . 33 17 16 0 0 PER3 8863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 7887456 7887456 + Missense_Mutation SNP G G A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . PER3-93 NM_016831 exon17 c.G2443A p.A815T GAATACGCAGCCC . 112 28 162 0 . 13 10 3 0 0 CELA2A 63036 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 15793929 15793929 + Nonsense_Mutation SNP C C T novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . CELA2A-92 NM_033440 exon7 c.C688T p.Q230X CGGTGGCAGGTGC . 66 8 82 0 . 0 0 0 0 0 CLCNKB 1188 broad.mit.edu 37 1 16378296 16378296 + Silent SNP A A C rs199755248 TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . CLCNKB-91 NM_000085 exon14 c.A1389C p.P463P CATGCCAGGGGGG . 99 5 116 0 A|0.992;C|0.008 7 7 0 0 0 ATXN7L2 127002 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 110034064 110034064 + Missense_Mutation SNP C C A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . ATXN7L2-92 NM_153340 exon10 c.C1879A p.L627M GGGCCCCTGGACT . 52 20 85 0 . 5 3 2 0 0 INSRR 3645 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 156811976 156811976 + Missense_Mutation SNP T T G novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . INSRR-1403 NM_014215 exon19 c.A3325C p.N1109H ACTTGTTGGCAGC . 41 12 58 0 . 0 0 0 0 0 C1orf21 81563 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 184476745 184476745 + Nonsense_Mutation SNP G G T novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . C1orf21-90 NM_030806 exon3 c.G118T p.E40X CCAGTGGAAGAGG . 85 17 45 0 . 26 25 1 0 0 PLEKHA6 22874 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 204198070 204198070 + Missense_Mutation SNP T T C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . PLEKHA6-654 NM_014935 exon19 c.A2746G p.K916E CCTCCTTATTGAT . 187 49 163 0 . 0 0 0 0 0 USH2A 7399 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 216019211 216019211 + Missense_Mutation SNP G G T novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . USH2A-115 NM_206933 exon45 c.C9010A p.H3004N TGCTGTGGACTCC . 68 13 81 0 . 0 0 0 0 0 TP53BP2 7159 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 223984099 223984099 + Silent SNP A A G novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . TP53BP2-229 NM_001031685 exon13 c.T2142C p.N714N GTAAGGATTAGAT . 228 52 208 0 . 75 40 35 0 0 PHRF1 57661 ucsc.edu 37 11 608874 608874 + Missense_Mutation SNP G G A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . PHRF1-22 NM_020901 exon14 c.G3415A p.E1139K CAGCGGGAACGCA . 46 4 55 0 . 41 41 0 0 0 ATG2A 23130 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 64679328 64679328 + Missense_Mutation SNP T T A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . ATG2A-69 NM_015104 exon9 c.A1214T p.Q405L TGGGCCTGGGCAG . 37 10 38 0 . 20 11 9 0 0 BBS1 582 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 66282135 66282135 + Missense_Mutation SNP A A G novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . BBS1-91 NM_024649 exon4 c.A418G p.N140D CTTTGGAACCAGG . 127 25 151 1 . 91 47 44 0 0 MAML2 84441 hgsc.bcm.edu 37 11 95825431 95825431 + Silent SNP T T C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . MAML2-850 NM_032427 exon2 c.A1764G p.Q588Q TTGCTGTTGGGTG . 11 3 11 2 . 21 21 0 0 0 TMEM133 83935 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 100863392 100863392 + Missense_Mutation SNP T T A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . TMEM133-90 NM_032021 exon1 c.T353A p.L118H TTCCACTTGGTAA . 153 28 177 0 . 21 10 11 0 0 PHLDB1 23187 hgsc.bcm.edu;bcgsc.ca 37 11 118516166 118516166 + Missense_Mutation SNP G G C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . PHLDB1-90 NM_001144758 exon16 c.G3214C p.G1072R CTTCACGGGGCAG . 90 26 152 0 . 22 22 0 0 0 GRIK4 2900 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 120745883 120745883 + Silent SNP C C T novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . GRIK4-92 NM_014619 exon9 c.C1095T p.F365F TGAATTCAACAGC . 136 24 111 0 . 0 0 0 0 0 CDON 50937 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 125880565 125880565 + Missense_Mutation SNP A A T novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . CDON-158 NM_016952 exon8 c.T1223A p.I408N GCCGTAATTATAA . 75 18 87 0 . 2 1 1 0 0 CACNA1C 775 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 2716231 2716231 + Silent SNP C C T novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . CACNA1C-34 NM_199460 exon27 c.C3351T p.D1117D GTTTGACTTTGAC . 45 12 50 2 . 2 2 0 0 0 SLC2A14 144195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 7982586 7982586 + Missense_Mutation SNP T T A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . SLC2A14-91 NM_153449 exon6 c.A358T p.I120F TGACAATCAGCAT . 81 16 63 0 . 31 31 0 0 0 DDX12P 440081 broad.mit.edu 37 12 9574020 9574020 + RNA SNP T T C rs200847155 TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . . . . . . GAATTCTAGCGGC . 151 4 114 0 T|0.998;C|0.002 21 2 19 0 0 SLC38A1 81539 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 46633478 46633478 + Missense_Mutation SNP T T A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . SLC38A1-518 NM_030674 exon3 c.A106T p.N36Y GACCATTTTCTAC . 171 33 88 0 . 20 15 5 0 0 TCTN1 79600 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 111070319 111070319 + Missense_Mutation SNP C C T novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . TCTN1-90 NM_024549 exon5 c.C667T p.P223S AGATTTCCTTCGT . 244 52 182 1 . 117 78 39 0 0 ATXN2 6311 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 111908459 111908459 + Missense_Mutation SNP G G C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . ATXN2-136 NM_002973 exon19 c.C3086G p.A1029G GGGGTGGCTGCAA . 179 63 149 0 . 38 17 21 0 0 SBNO1 55206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 123806180 123806180 + Missense_Mutation SNP T T C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . SBNO1-292 NM_001167856 exon16 c.A2225G p.N742S TCTTCATTATCAG . 218 90 132 0 . 14 5 9 0 0 MTHFD1 4522 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 64915025 64915025 + Missense_Mutation SNP A A C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . MTHFD1-92 NM_005956 exon23 c.A2269C p.N757H GCCGTGAATGCAT . 59 12 43 0 . 9 3 6 0 0 GALNT16 57452 bcgsc.ca 37 14 69787575 69787575 + Missense_Mutation SNP C C A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . . NM_001168368 exon2 c.C325A p.R109S GACACCCGCCATT . 97 6 75 0 . 0 0 0 0 0 STON2 85439 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 81744521 81744521 + Silent SNP G G A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . STON2-95 NM_001256430 exon6 c.C1134T p.H378H ATCAGAGTGTGAC . 129 29 131 1 . 7 5 2 0 0 ATG2B 55102 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 96784101 96784101 + Missense_Mutation SNP C C G novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . ATG2B-93 NM_018036 exon19 c.G2971C p.A991P GACTGGCTACTGA . 189 35 134 0 . 7 5 2 0 0 SCAPER 49855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 77087751 77087751 + Silent SNP A A T novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . SCAPER-137 NM_020843 exon7 c.T642A p.R214R AGCCAGACGAGGA . 83 20 76 1 . 3 3 0 0 0 TMED3 23423 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 79606106 79606106 + Missense_Mutation SNP C C G novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . TMED3-92 NM_007364 exon2 c.C176G p.T59S TCATCACTGGAGG . 51 8 42 0 . 0 0 0 0 0 SRRM2 23524 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 2808492 2808492 + Missense_Mutation SNP T T A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . SRRM2-93 NM_016333 exon5 c.T537A p.S179R TAGCAGTTCTCGC . 274 50 268 0 . 48 31 17 0 0 SRCAP 10847 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 30750805 30750805 + Missense_Mutation SNP T T A rs142948420 byfrequency;alternate_allele TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . SRCAP-94 NM_006662 exon34 c.T9444A p.S3148R TGGGAGTCCTGGG . 40 6 40 0 T|0.997;C|0.003 81 48 32 0 1 ELMO3 79767 broad.mit.edu;bcgsc.ca 37 16 67233265 67233265 + Silent SNP C C A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . ELMO3-90 NM_024712 exon1 c.C195A p.I65I TGCCATCAAGATG . 86 15 80 0 . 8 0 8 0 0 WSCD1 23302 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 6012935 6012935 + Silent SNP C C G novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . WSCD1-90 NM_015253 exon6 c.C858G p.P286P GTTCCCCTTGGCC . 392 87 483 1 . 0 0 0 0 0 POLR2A 5430 ucsc.edu 37 17 7414839 7414839 + Missense_Mutation SNP C C T rs142714917 TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . POLR2A-91 NM_000937 exon24 c.C4033T p.R1345W TTGATGCGGGTGC . 40 4 40 0 C|1.000;T|0.000 110 110 0 0 0 TVP23C 201158 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA . 397 58 377 53 . 40 5 35 0 0 ZNF830 91603 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 33289281 33289281 + Silent SNP T T C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . ZNF830-89 NM_052857 exon1 c.T696C p.H232H AATACATGAAAAA . 59 16 63 0 . 32 18 14 0 0 NR1D1 9572 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 17 38253601 38253601 + Silent SNP A A G novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . NR1D1-226 NM_021724 exon2 c.T87C p.P29P GGATTCAGGGCTG . 30 12 47 0 . 51 23 28 0 0 NAGS 162417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 42083544 42083544 + Missense_Mutation SNP T T C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . NAGS-90 NM_153006 exon3 c.T854C p.L285P AGGCGCTGCGGCC . 60 14 82 0 . 0 0 0 0 0 DCXR 51181 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 79994491 79994491 + Missense_Mutation SNP C C A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . DCXR-90 NM_016286 exon5 c.G377T p.G126V GGGACTCCCCGGG . 85 16 88 0 . 143 99 44 0 0 SCAMP4 113178 ucsc.edu 37 19 1924169 1924169 + Silent SNP G G A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . SCAMP4-68 NM_079834 exon7 c.G576A p.T192T GAACACGGGCACT . 21 3 14 0 . 67 37 30 0 0 CATSPERD 257062 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 19 5744442 5744442 + Missense_Mutation SNP A A G novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . . NM_152784 exon8 c.A578G p.E193G AGGCAGAAATCAT . 125 16 112 0 . 0 0 0 0 0 PNPLA6 10908 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 7619510 7619510 + Silent SNP G G A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . PNPLA6-47 NM_001166111 exon23 c.G2565A p.Q855Q CTACCAGACGGAC . 127 35 144 1 . 114 79 34 0 1 QTRT1 81890 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 10823458 10823458 + Missense_Mutation SNP A A G novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . QTRT1-91 NM_031209 exon8 c.A886G p.T296A GTGCCCACTGGGA . 228 44 249 0 . 63 41 22 0 0 NOTCH3 4854 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 19 15289675 15289675 + Missense_Mutation SNP C C G novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . NOTCH3-855 NM_000435 exon23 c.G3796C p.G1266R CAGGACCCGGGCT . 17 5 25 0 . 10 10 0 0 0 CEACAM5 1048 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 42219580 42219580 + Missense_Mutation SNP G G A rs199857011 alternate_allele TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . CEACAM5-92 NM_004363 exon4 c.G715A p.A239T CCGGATGCCCCCA . 106 30 100 1 G|1.000;T|0.000 0 0 0 0 0 RASIP1 54922 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 49230414 49230414 + Missense_Mutation SNP G G T novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . RASIP1-228 NM_017805 exon7 c.C1873A p.H625N CAGGGTGGCTTGA . 44 16 58 0 . 0 0 0 0 0 IL4I1 259307 ucsc.edu 37 19 50397531 50397531 + Silent SNP G G C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . IL4I1-523 NM_172374 exon7 c.C627G p.L209L CTGGTTGAGAGCC . 23 4 21 0 . 0 0 0 0 0 GPR32 2854 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 51273914 51273914 + Silent SNP G G C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . GPR32-91 NM_001506 exon1 c.G57C p.L19L GGTCCTGACACGT . 45 8 51 0 . 0 0 0 0 0 ZNF416 55659 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 58084258 58084258 + Silent SNP A A G novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . ZNF416-90 NM_017879 exon4 c.T1014C p.S338S GTTGGAACTTTGG . 75 15 74 0 . 6 4 2 0 0 SMEK2 57223 broad.mit.edu;ucsc.edu 37 2 55844410 55844410 + Silent SNP C C T rs142775723 TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . SMEK2-228 NM_001122964 exon1 c.G12A p.T4T CCGCCGCGTATCC . 26 4 25 0 C|1.000;T|0.000 35 28 7 0 0 DUSP11 8446 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 74007101 74007101 + Missense_Mutation SNP T T C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . DUSP11-227 NM_003584 exon1 c.A142G p.M48V GGCTCATGTGGGT . 82 24 108 0 . 19 15 4 0 0 DPP10 57628 broad.mit.edu 37 2 116572492 116572492 + Silent SNP T T C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . DPP10-142 NM_001178034 exon20 c.T1836C p.G612G CCAGGGTCTGAAA . 103 3 102 1 . 0 0 0 0 0 ARHGEF4 50649 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 131801882 131801882 + Missense_Mutation SNP G G A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . ARHGEF4-292 NM_032995 exon12 c.G1610A p.R537H TGCTCCGCCGCGA . 23 10 27 0 . 0 0 0 0 0 FRG1B 284802 bcgsc.ca 37 20 29628225 29628225 + RNA SNP A A G novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . FRG1B-22 NR_003579 exon5 c.529-2A>G . TCACTTAGGGGAA . 159 12 141 3 . 0 0 0 0 0 CSE1L 1434 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 47691344 47691344 + Silent SNP A A G novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . CSE1L-290 NM_001316 exon11 c.A1089G p.E363E ATTTGAAGATAAT . 58 12 48 0 . 50 25 25 0 0 BRWD1 54014 broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 40582820 40582820 + Missense_Mutation SNP G G T novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . BRWD1-94 NM_018963 exon35 c.C3936A p.N1312K AACATAGTTCGTA . 72 14 55 0 . 5 2 3 0 0 TXN2 25828 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 36876727 36876727 + Missense_Mutation SNP T T C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . TXN2-90 NM_012473 exon2 c.A158G p.Y53C GTGGTGTATATTG . 117 24 117 0 . 183 113 70 0 0 CNTN6 27255 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 1371578 1371578 + Missense_Mutation SNP C C G novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . CNTN6-345 NM_014461 exon11 c.C1323G p.I441M AGCTATCTCTTGG . 59 14 50 0 . 42 27 15 0 0 PLXNB1 5364 hgsc.bcm.edu 37 3 48456619 48456619 + Missense_Mutation SNP G G C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . PLXNB1-293 NM_001130082 exon20 c.C3932G p.A1311G GAACATGCCGTCT . 54 3 74 0 . 85 85 0 0 0 CHDH 55349 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 53857341 53857341 + Missense_Mutation SNP A A G novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . CHDH-91 NM_018397 exon3 c.T695C p.I232T TCATGGATGGTCA . 17 5 18 0 . 0 0 0 0 0 VGLL3 389136 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 87017993 87017993 + Silent SNP C C T novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . VGLL3-90 NM_016206 exon3 c.G684A p.R228R GTGGTGCCGCATG . 78 21 77 1 . 0 0 0 0 0 PARP14 54625 broad.mit.edu;ucsc.edu 37 3 122414352 122414352 + Silent SNP G G A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . PARP14-525 NM_017554 exon5 c.G678A p.V226V GGAAGTGACAAAC . 25 5 25 0 . 18 10 8 0 0 EPHB1 2047 broad.mit.edu;bcgsc.ca 37 3 134873005 134873005 + Missense_Mutation SNP G G A rs183234182 TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . EPHB1-1492 NM_004441 exon6 c.G1309A p.V437I TCCACCGTTCCCA . 359 18 370 1 G|0.999;A|0.000 0 0 0 0 0 TLR1 7096 broad.mit.edu;bcgsc.ca 37 4 38798114 38798114 + Missense_Mutation SNP A A T rs151285692 alternate_allele TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . TLR1-524 NM_003263 exon4 c.T2339A p.L780Q TCTGTCAGCTTAA . 67 7 64 0 A|1.000;G|0.000 24 23 1 0 0 SLC30A9 10463 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 42072612 42072612 + Missense_Mutation SNP T T A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . SLC30A9-91 NM_006345 exon15 c.T1322A p.L441H CATTCCTCATCTA . 133 43 110 0 . 66 34 32 0 0 KCTD8 386617 hgsc.bcm.edu 37 4 44449962 44449962 + Missense_Mutation SNP G G C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . KCTD8-92 NM_198353 exon1 c.C579G p.H193Q ACCACCGTGCGCT . 3 2 4 1 . 0 0 0 0 0 TXK 7294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 48076056 48076056 + Missense_Mutation SNP T T A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . TXK-521 NM_003328 exon13 c.A1253T p.D418V TACTCATCATCCA . 104 18 66 1 . 0 0 0 0 0 WDFY3 23001 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 85781624 85781624 + Missense_Mutation SNP G G A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . WDFY3-93 NM_014991 exon4 c.C121T p.H41Y TCATGTGCCGGGG . 156 30 128 0 . 4 4 0 0 0 CENPE 1062 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 104117130 104117130 + Missense_Mutation SNP G G A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . CENPE-277 NM_001813 exon4 c.C304T p.H102Y CCAAATGATCTTC . 44 8 60 0 . 0 0 0 0 0 ADAMTS19 171019 broad.mit.edu 37 5 128983499 128983499 + Silent SNP T T C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . ADAMTS19-295 NM_133638 exon12 c.T1896C p.P632P AGCACCTGAACAT . 213 8 191 0 . 0 0 0 0 0 RAD50 10111 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 131976367 131976367 + Silent SNP T T C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . RAD50-229 NM_005732 exon24 c.T3622C p.L1208L CAGGTATTAGCCT . 177 36 186 0 . 0 0 0 0 0 PCDHGA11 56105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140802438 140802438 + Silent SNP G G C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . . NM_032091 exon1 c.G1644C p.S548S CGTGTCGCTGAGC . 301 52 349 1 . 1 0 1 0 0 TRIM38 10475 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 25967011 25967011 + Silent SNP G G C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . TRIM38-226 NM_006355 exon3 c.G261C p.T87T AGAGACGGATCAA . 54 17 54 0 . 78 50 28 0 0 ITPR3 3710 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 33644599 33644599 + Missense_Mutation SNP G G A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . ITPR3-1085 NM_002224 exon26 c.G3337A p.E1113K AAGTCGGAGCTGG . 67 19 94 0 . 61 35 26 0 0 CPNE5 57699 broad.mit.edu;bcgsc.ca 37 6 36712081 36712081 + Missense_Mutation SNP T T A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . CPNE5-91 NM_020939 exon19 c.A1453T p.I485F TAATGATGGACAT . 10 6 21 0 . 1 1 0 0 0 DOPEY1 23033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 83839062 83839062 + Missense_Mutation SNP C C A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . DOPEY1-155 NM_015018 exon16 c.C2176A p.Q726K AATTCACAAGGAG . 85 16 56 0 . 5 4 1 0 0 FAM120B 84498 hgsc.bcm.edu;bcgsc.ca 37 6 170700175 170700175 + Missense_Mutation SNP C C G novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . FAM120B-91 NM_032448 exon8 c.C2565G p.I855M ACGCATCACTGGC . 58 4 60 0 . 37 37 0 0 0 OGDH 4967 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 44685022 44685022 + Missense_Mutation SNP G G T novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . OGDH-228 NM_001165036 exon3 c.G319T p.V107L GCTGCTGTGGCCC . 169 35 159 0 . 128 95 33 0 0 NSUN5P2 260294 ucsc.edu 37 7 72420466 72420466 + RNA SNP C C T novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . NSUN5P2-90 . . . . GCCTGGCGGGGGT . 86 2 83 1 . 18 9 9 0 0 MET 4233 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 116423407 116423407 + Missense_Mutation SNP G G C rs28932777 alternate_allele TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . MET-5874 NM_001127500 exon19 c.G3736C p.D1246H GCCAGAGACATGT . 101 30 67 1 . 323 132 191 0 0 HR 55806 broad.mit.edu 37 8 21984840 21984840 + Missense_Mutation SNP G G A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . HR-154 NM_018411 exon3 c.C1115T p.P372L CTGGGGGGACAGG . 325 8 348 0 . 0 0 0 0 0 NEFL 4747 ucsc.edu 37 8 24813289 24813289 + Missense_Mutation SNP C C T novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . NEFL-24 NM_006158 exon1 c.G741A p.M247I CACGTCCATCTCC . 34 4 31 0 . 21 21 0 0 0 ADAM32 203102 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 39044454 39044454 + Silent SNP A A G novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . ADAM32-227 NM_145004 exon11 c.A942G p.A314A GGAGGCATTTGCA . 139 34 83 0 . 0 0 0 0 0 OSGIN2 734 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 90936955 90936955 + Missense_Mutation SNP G G C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . OSGIN2-68 NM_001126111 exon6 c.G845C p.R282T AAATTAGGGGTTA . 95 30 84 0 . 23 10 12 0 1 SLC2A8 29988 broad.mit.edu;bcgsc.ca 37 9 130160364 130160364 + Missense_Mutation SNP T T A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . SLC2A8-92 NM_014580 exon3 c.T400A p.C134S CTGGCCTGCGGTG . 24 8 22 0 . 14 11 3 0 0 VSIG4 11326 ucsc.edu 37 X 65244923 65244923 + Missense_Mutation SNP C C T novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . VSIG4-130 NM_001257403 exon6 c.G884A p.C295Y ACCATACAGCACA . 16 4 13 0 . 160 160 0 0 0 THOC2 57187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 122770007 122770007 + Silent SNP A A G novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . THOC2-133 NM_001081550 exon19 c.T1941C p.G647G AACTGCACCACAG . 72 36 59 1 . 12 1 11 0 0 ZNF275 10838 ucsc.edu 37 X 152613054 152613054 + Missense_Mutation SNP G G A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . ZNF275-109 NM_001080485 exon4 c.G911A p.R304K TCCGAAGGAGCTC . 7 2 14 0 . 6 1 5 0 0 THRAP3 9967 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 36767245 36767245 + Frame_Shift_Del DEL G G - novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . THRAP3-663 NM_005119 exon11 c.2594delG p.R865fs . . 78 21 75 0 . 0 0 0 0 0 DNAJC1 64215 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 22171214 22171214 + Frame_Shift_Del DEL T T - novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . DNAJC1-226 NM_022365 exon8 c.975delA p.K325fs . . 77 16 66 0 . 0 0 0 0 0 PHLDB1 23187 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 118516164 118516164 + Frame_Shift_Del DEL A A - novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . PHLDB1-90 NM_001144758 exon16 c.3212delA p.H1071fs . . 92 27 143 0 . 0 0 0 0 0 PHLDB1 23187 hgsc.bcm.edu 37 11 118516168 118516168 + Frame_Shift_Del DEL G G - novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . PHLDB1-90 NM_001144758 exon16 c.3216delG p.G1072fs . . 90 19 152 0 . 0 0 0 0 0 HEATR3 55027 bcgsc.ca 37 16 50112873 50112889 + Frame_Shift_Del DEL GGAATTTCTCATAAAAG GGAATTTCTCATAAAAG - novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 GGAATTTCTCATAAAAG GGAATTTCTCATAAAAG - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . HEATR3-92 NM_182922 exon7 c.985_1001del p.329_334del ATGGAAGGAATTT . 72 6 68 0 . 0 0 0 0 0 NR3C2 4306 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 149357285 149357285 + Frame_Shift_Del DEL T T - novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . NR3C2-154 NM_001166104 exon2 c.728delA p.N243fs . . 149 46 147 0 . 0 0 0 0 0 PTCHD3 374308 broad.mit.edu;bcgsc.ca 37 10 27687672 27687673 + In_Frame_Ins INS - - GTATAT novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . PTCHD3-94 NM_001034842 exon4 c.1855_1856insATATAC p.G619delinsIYG AACACCCATATAT . 102 12 119 0 . 0 0 0 0 0 H2AFJ 55766 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 14927683 14927684 + Frame_Shift_Ins INS - - T novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . H2AFJ-69 NM_177925 exon1 c.279_280insT p.E93fs . . 159 58 131 0 . 0 0 0 0 0 OGG1 4968 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 9800959 9800960 + Frame_Shift_Ins INS - - T novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . OGG1-660 NM_016828 exon7 c.1037_1038insT p.S346fs . . 157 32 172 0 . 0 0 0 0 0 MAML1 9794 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 179193559 179193560 + Frame_Shift_Ins INS - - C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . MAML1-848 NM_014757 exon2 c.1548_1549insC p.K516fs . . 80 19 103 0 . 0 0 0 0 0 TBC1D9B 23061 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 179318454 179318455 + Frame_Shift_Ins INS - - A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . TBC1D9B-154 NM_198868 exon6 c.969_970insT p.M323fs . . 176 41 184 0 . 0 0 0 0 0 KLHL7 55975 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 23163475 23163476 + Frame_Shift_Ins INS - - T novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . KLHL7-90 NM_001172428 exon2 c.200_201insT p.H67fs . . 94 30 49 0 . 0 0 0 0 0 MCPH1 79648 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 6335132 6335133 + Frame_Shift_Ins INS - - A novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . MCPH1-229 NM_024596 exon10 c.1953_1954insA p.V651fs . . 281 77 159 0 . 0 0 0 0 0 GSN 2934 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 124089637 124089638 + Frame_Shift_Ins INS - - C novel TCGA-BQ-7059-01A-11D-1961-08 TCGA-BQ-7059-11A-01D-1961-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9beec2fe-169d-4c3d-b177-f0d7bd9e5e96 bdab2c62-1568-47e5-b8f6-99ada040a736 . GSN-154 NM_000177 exon13 c.1792_1793insC p.T598fs . . 85 16 83 0 . 0 0 0 0 0