Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
UBE4B	10277	broad.mit.edu;bcgsc.ca	37	1	10177626	10177626	+	Silent	SNP	C	C	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	UBE4B-229	NM_001105562	exon8	c.C1306A	p.R436R	TTCGACCGAGTTG	.	50	5	72	0	.	2	2	0	0	0
VPS13D	55187	bcgsc.ca	37	1	12387776	12387776	+	Missense_Mutation	SNP	A	A	C	rs201321059		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	VPS13D-95	NM_015378	exon36	c.A8062C	p.T2688P	GCCTCCACCAGCC	.	201	36	220	10	.	3	3	0	0	0
C1orf173	127254	bcgsc.ca	37	1	75037375	75037375	+	Missense_Mutation	SNP	A	A	C	rs78115948		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	C1orf173-94	NM_001002912	exon14	c.T4019G	p.V1340G	ACTTCCACAGCCA	.	115	18	163	3	.	0	0	0	0	0
FRRS1	391059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	100214268	100214268	+	Silent	SNP	A	A	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	FRRS1-91	NM_001013660	exon3	c.T57C	p.Y19Y	AGCCACATAACTA	.	107	38	112	0	.	0	0	0	0	0
ALX3	257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110604111	110604111	+	Silent	SNP	G	G	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ALX3-90	NM_006492	exon3	c.C669A	p.P223P	CGTGAAGGGGTTC	.	101	34	106	0	.	7	7	0	0	0
FCRL1	115350	bcgsc.ca	37	1	157776893	157776893	+	Silent	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	FCRL1-153	NM_001159397	exon2	c.C51T	p.A17A	CTCACCGGCAGGT	.	50	4	119	0	.	0	0	0	0	0
DSTYK	25778	hgsc.bcm.edu	37	1	205132867	205132867	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	DSTYK-333	NM_199462	exon4	c.G1541C	p.S514T	TAATTACTGGTGA	.	31	2	35	0	.	0	0	0	0	0
PIP4K2A	5305	bcgsc.ca	37	10	22856802	22856802	+	Missense_Mutation	SNP	C	C	T	rs201266267		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	PIP4K2A-665	NM_005028	exon6	c.G656A	p.R219K	GCTTCTCTAGCCA	.	126	16	211	1	.	1	1	0	0	0
SYT15	83849	hgsc.bcm.edu	37	10	46969435	46969435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	SYT15-22	NM_031912	exon2	c.T26C	p.I9T	CCCCCAATCACCA	.	17	10	28	1	.	0	0	0	0	0
ARHGAP22	58504	bcgsc.ca	37	10	49667744	49667744	+	Silent	SNP	C	C	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ARHGAP22-228	NM_001256024	exon5	c.G690A	p.E230E	TGGCTTCTCCCCA	.	209	25	280	0	.	1	1	0	0	0
TMEM26	219623	bcgsc.ca	37	10	63195951	63195951	+	Missense_Mutation	SNP	G	G	A	rs200974700		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	TMEM26-90	NM_178505	exon2	c.C247T	p.L83F	ATTCAAGAAGCCA	.	42	10	72	0	.	0	0	0	0	0
DNA2	1763	bcgsc.ca	37	10	70196869	70196869	+	Silent	SNP	A	A	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	.	NM_001080449	exon10	c.T1545G	p.G515G	TCTGTCACCTGCC	.	144	32	251	13	.	4	4	0	0	0
RIC8A	60626	broad.mit.edu;bcgsc.ca	37	11	208890	208890	+	Silent	SNP	G	G	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	RIC8A-514	NM_021932	exon1	c.G36T	p.T12T	GGAGACGGGTGAG	.	15	4	39	0	.	3	2	1	0	0
ANO9	338440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	428825	428825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ANO9-227	NM_001012302	exon12	c.A917G	p.E306G	ATTTCCTCCTGGG	.	23	10	48	0	.	0	0	0	0	0
OR5B3	441608	broad.mit.edu	37	11	58170566	58170566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	OR5B3-68	NM_001005469	exon1	c.C317T	p.A106V	ACAGTGGCAAAAG	.	139	4	97	0	.	0	0	0	0	0
MALAT1	378938	ucsc.edu;bcgsc.ca	37	11	65273039	65273039	+	RNA	SNP	C	C	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	.	.	.	.	.	GCCACCCCGTGCC	.	106	45	150	0	.	123	59	64	0	0
LARP4	113251	bcgsc.ca	37	12	50869377	50869377	+	Silent	SNP	G	G	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	LARP4-91	NM_052879	exon16	c.G1905C	p.V635V	TCTTGTGCAGCCA	.	225	34	353	0	.	3	3	0	0	0
BEST3	144453	bcgsc.ca	37	12	70049556	70049556	+	Missense_Mutation	SNP	A	A	C	rs75364232		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	BEST3-248	NM_032735	exon10	c.T1138G	p.W380G	AATCCCACAGCCA	.	117	19	160	0	.	1	1	0	0	0
RPL6	6128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	112843158	112843158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	RPL6-153	NM_001024662	exon7	c.G737A	p.R246H	ATCTTGCGCTGCT	.	59	16	49	0	.	1890	995	894	0	1
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	12	4	16	0	.	13	11	2	0	0
DMXL2	23312	broad.mit.edu;bcgsc.ca	37	15	51783908	51783908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	DMXL2-99	NM_001174116	exon20	c.C4820T	p.S1607F	GCCTCAGAATGAA	.	121	49	144	2	.	0	0	0	0	0
CHD2	1106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	93567925	93567925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	CHD2-229	NM_001271	exon39	c.G5477A	p.R1826Q	ATGTTCGGAAAAC	.	44	4	59	0	.	12	12	0	0	0
SMG1	23049	hgsc.bcm.edu	37	16	18841542	18841542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	SMG1-1160	NM_015092	exon52	c.A8942G	p.K2981R	TTTACCTTTTCAA	.	26	2	34	0	.	0	0	0	0	0
NFATC2IP	84901	hgsc.bcm.edu	37	16	28962357	28962357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	NFATC2IP-91	NM_032815	exon1	c.G25A	p.G9S	AAGCGGGGCCGCT	.	12	5	7	0	.	1	0	1	0	0
PLEKHG4	25894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67315014	67315014	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	PLEKHG4-92	NM_001129728	exon5	c.G740C	p.G247A	CACTGGGACTGAC	.	118	62	155	0	.	2	2	0	0	0
CDH3	1001	bcgsc.ca	37	16	68732251	68732251	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	CDH3-950	NM_001793	exon16	c.G2438C	p.G813A	AGTGGGGCAGCCG	.	114	18	158	0	.	0	0	0	0	0
AP1G1	164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	71789972	71789972	+	Silent	SNP	C	C	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	AP1G1-92	NM_001030007	exon13	c.G1188A	p.E396E	TTCTGGCTCACAC	.	140	59	153	1	.	1	1	0	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77325309	77325309	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ADAMTS18-1036	NM_199355	exon21	c.G3256T	p.G1086X	GCTTTCCCTGGAA	.	349	6	353	0	.	0	0	0	0	0
CCL23	6368	broad.mit.edu	37	17	34340315	34340315	+	Silent	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	CCL23-90	NM_005064	exon4	c.C336T	p.A112A	GGGGTTGGCACAG	.	68	3	28	0	.	0	0	0	0	0
CDK12	51755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37627488	37627488	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	CDK12-1055	NM_016507	exon2	c.T1403A	p.L468Q	CACATCTAAACAC	.	187	50	159	0	.	3	2	1	0	0
CDC27	996	hgsc.bcm.edu	37	17	45214661	45214661	+	Silent	SNP	G	G	A	rs111322439		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	CDC27-291	NM_001114091	exon14	c.C1788T	p.F596F	TCTCTGGAAGAAT	.	117	9	81	1	G|0.500;A|0.500	10	10	0	0	0
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	57754485	57754485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	CLTC-835	NM_004859	exon17	c.A2732G	p.K911R	GTGAGAAGAGAGA	.	127	82	82	0	.	3	0	3	0	0
MRC2	9902	hgsc.bcm.edu	37	17	60767020	60767020	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	MRC2-117	NM_006039	exon24	c.G3472C	p.A1158P	CGCAATGCCAGCC	.	25	2	16	0	.	0	0	0	0	0
SLC16A6	9120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	66267173	66267173	+	Silent	SNP	A	A	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	SLC16A6-90	NM_001174166	exon6	c.T1128C	p.F376F	AAAAGTAAAGGCA	.	130	85	94	0	.	2	2	0	0	0
MIR7-3	407045	bcgsc.ca	37	19	4770697	4770697	+	RNA	SNP	T	T	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	.	.	.	.	.	TGGCTGTGGTCTA	.	175	21	289	1	.	2	2	0	0	0
ZNF763	284390	hgsc.bcm.edu	37	19	12088187	12088187	+	Silent	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ZNF763-90	NM_001012753	exon3	c.G141A	p.G47G	TTTAGGGAAAAAG	.	83	7	65	0	.	2	2	0	0	0
ROCK2	9475	broad.mit.edu	37	2	11354553	11354553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ROCK2-546	NM_004850	exon17	c.G1973A	p.G658D	ATTTTGCCGTTCT	.	78	4	64	0	.	0	0	0	0	0
ZNF514	84874	bcgsc.ca	37	2	95818976	95818976	+	Missense_Mutation	SNP	A	A	C	rs79400981		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ZNF514-90	NM_032788	exon3	c.T23G	p.V8G	AATTCCACAGCCA	.	72	10	101	0	.	13	13	0	0	0
PROM2	150696	bcgsc.ca	37	2	95945594	95945594	+	Missense_Mutation	SNP	T	T	G	rs199504764		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	PROM2-91	NM_001165977	exon11	c.T1276G	p.W426G	GGCAGGTGGATCG	.	93	24	146	7	T|0.998;G|0.002	0	0	0	0	0
BIN1	274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	127828371	127828371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	BIN1-655	NM_139346	exon3	c.A187G	p.K63E	GATCCTTCTGCAG	.	56	24	31	0	.	54	22	32	0	0
RAB6C	84084	hgsc.bcm.edu	37	2	130738210	130738210	+	Silent	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	RAB6C-251	NM_032144	exon1	c.G522A	p.L174L	AGCTTTGCCGGGA	.	221	62	206	0	.	8	8	0	0	0
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152512859	152512859	+	Silent	SNP	C	C	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	NEB-145	NM_004543	exon49	c.G6303A	p.E2101E	CTTGTACTCCCGA	.	155	66	191	0	.	0	0	0	0	0
SCN3A	6328	bcgsc.ca	37	2	166012356	166012356	+	Nonsense_Mutation	SNP	G	G	T	rs202083628		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	SCN3A-141	NM_001081676	exon10	c.C1089A	p.Y363X	GCTTGTGTAGCCA	.	85	11	155	0	.	1	1	0	0	0
SCN9A	6335	bcgsc.ca	37	2	167060900	167060900	+	Silent	SNP	C	C	T	rs201748099		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	SCN9A-181	NM_002977	exon25	c.G4440A	p.K1480K	TGGCTTCTTGGAC	.	61	15	111	1	.	0	0	0	0	0
ABCB11	8647	bcgsc.ca	37	2	169847341	169847341	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ABCB11-139	NM_003742	exon9	c.C878G	p.A293G	CCAAAAGCAGCCA	.	279	26	411	1	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179433843	179433843	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	TTN-636	NM_001267550	exon326	c.C77016G	p.Y25672X	TCTAAAGTAATAA	.	231	99	200	0	.	0	0	0	0	0
COL6A3	1293	bcgsc.ca	37	2	238253123	238253123	+	Missense_Mutation	SNP	A	A	C	rs199609978		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	COL6A3-526	NM_004369	exon36	c.T7538G	p.V2513G	AAGAAAACAGCCA	.	210	29	205	0	.	4	4	0	0	0
CDS2	8760	bcgsc.ca	37	20	5157344	5157344	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	CDS2-226	NM_003818	exon4	c.C342A	p.Y114X	TGGCTACAACGTC	.	252	21	303	0	.	4	4	0	0	0
ZHX3	23051	ucsc.edu	37	20	39832697	39832697	+	Missense_Mutation	SNP	T	T	G	rs200146666		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ZHX3-93	NM_015035	exon3	c.A860C	p.H287P	GGCTGGTGGACAT	.	116	12	81	5	T|0.999;G|0.001	4	4	0	0	0
LSM14B	149986	hgsc.bcm.edu	37	20	60697753	60697753	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	LSM14B-22	NM_144703	exon1	c.G31C	p.G11R	TATCTGGGCAGCA	.	38	2	53	0	.	0	0	0	0	0
ZGPAT	84619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62340218	62340218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ZGPAT-90	NM_032527	exon2	c.G286A	p.A96T	GCAGCGGCCCGTG	.	122	72	135	1	.	25	7	18	0	0
FBXO7	25793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	32889131	32889131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	FBXO7-228	NM_012179	exon7	c.C1007A	p.P336Q	TCCTCCCATTGGA	.	278	111	270	1	.	55	30	25	0	0
RBM6	10180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50005960	50005960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	RBM6-280	NM_005777	exon3	c.G1102T	p.D368Y	GACCAAGATAAGT	.	96	43	72	0	.	28	15	13	0	0
DGKQ	1609	hgsc.bcm.edu	37	4	954919	954919	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	DGKQ-537	NM_001347	exon22	c.T2645C	p.L882P	GCCTTGAGGAGCG	.	34	2	56	0	.	12	12	0	0	0
WHSC1	7468	bcgsc.ca	37	4	1957868	1957868	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	WHSC1-664	NM_133335	exon15	c.G2834C	p.G945A	ACCGGGGCAGCCG	.	216	33	258	2	.	9	9	0	0	0
RBPJ	3516	hgsc.bcm.edu	37	4	26426305	26426305	+	Silent	SNP	C	C	T	rs5007635		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	RBPJ-659	NM_005349	exon8	c.C726T	p.I242I	CTACATCCATTAT	.	45	3	99	0	.	6	6	0	0	0
PET112	5188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	152592364	152592364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	PET112-90	NM_004564	exon13	c.A1636G	p.M546V	TTATCATGACTGG	.	187	88	156	0	.	82	46	36	0	0
SPEF2	79925	bcgsc.ca	37	5	35670228	35670228	+	Missense_Mutation	SNP	C	C	A	rs77343152		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	SPEF2-26	NM_024867	exon10	c.C1423A	p.Q475K	TATGAACAAGCCT	.	200	29	194	0	.	4	4	0	0	0
LOX	4015	bcgsc.ca	37	5	121409741	121409741	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	LOX-650	NM_002317	exon4	c.C1002A	p.Y334X	CCTGTGGTAGCCA	.	226	20	329	0	.	2	2	0	0	0
F12	2161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176831341	176831341	+	Silent	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	F12-90	NM_000505	exon9	c.C874T	p.L292L	GTGCCAGGTCGCA	.	35	15	50	0	.	0	0	0	0	0
FAM65B	9750	bcgsc.ca	37	6	24850081	24850081	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	FAM65B-91	NM_015864	exon11	c.T896G	p.V299G	ATGTCGACAGCCA	.	238	44	297	1	.	2	2	0	0	0
ZKSCAN3	80317	bcgsc.ca	37	6	28333714	28333714	+	Silent	SNP	G	G	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ZKSCAN3-92	NM_024493	exon6	c.G1269A	p.E423E	TGGGGAGAAGCCG	.	49	14	73	0	.	5	4	1	0	0
HLA-DOA	3111	broad.mit.edu;bcgsc.ca	37	6	32974906	32974906	+	Missense_Mutation	SNP	C	C	T	rs200140467		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	HLA-DOA-514	NM_002119	exon4	c.G700A	p.V234M	TGCCCACGAGGAA	.	106	6	141	0	C|0.999;T|0.000	1	1	0	0	0
FKBP5	2289	bcgsc.ca	37	6	35610559	35610559	+	Missense_Mutation	SNP	T	T	G	rs139048363		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	FKBP5-227	NM_001145775	exon3	c.A43C	p.T15P	TGGCTGTGGGGCT	.	202	23	311	0	.	0	0	0	0	0
FAM184A	79632	bcgsc.ca	37	6	119282964	119282964	+	Silent	SNP	T	T	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	FAM184A-519	NM_024581	exon17	c.A3303C	p.P1101P	TGGCTGTGGAAGT	.	325	38	355	3	.	0	0	0	0	0
L3MBTL3	84456	bcgsc.ca	37	6	130442104	130442104	+	Splice_Site	SNP	G	G	T	rs200269881		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	L3MBTL3-96	NM_032438	exon20	c.1966+1G>T	.	CCAGAGGTAGCCA	.	71	13	148	0	.	0	0	0	0	0
PLG	5340	broad.mit.edu	37	6	161152118	161152118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	PLG-94	NM_000301	exon11	c.C1292T	p.A431V	CAGATGCCGATAA	.	121	4	125	0	.	0	0	0	0	0
VPS37D	155382	hgsc.bcm.edu	37	7	73083798	73083798	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	VPS37D-68	NM_001077621	exon2	c.C188G	p.A63G	ACTACGCGCTGGC	.	10	4	7	0	.	10	4	6	0	0
DPYS	1807	hgsc.bcm.edu	37	8	105479134	105479134	+	Silent	SNP	C	C	T	rs182332679		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	DPYS-229	NM_001385	exon1	c.G15A	p.S5S	GAGCCGCGAGGGC	.	6	6	1	1	C|0.967;T|0.033	0	0	0	0	0
EDF1	8721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139757816	139757816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	EDF1-90	NM_003792	exon3	c.G215T	p.R72M	GTCACCCTGTCAT	.	48	19	69	0	.	1601	722	879	0	0
DDX3X	1654	bcgsc.ca	37	X	41205659	41205659	+	Missense_Mutation	SNP	C	C	A	rs200427211		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	DDX3X-715	NM_001193416	exon13	c.C1493A	p.T498K	TGGCTACAGCAGT	.	75	12	68	0	.	0	0	0	0	0
PHF8	23133	hgsc.bcm.edu	37	X	53966769	53966769	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	PHF8-133	NM_001184896	exon21	c.G2938C	p.A980P	ACAGGGCCTCTTG	.	29	2	50	0	.	7	7	0	0	0
FGGY	55277	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	60133071	60133091	+	Frame_Shift_Del	DEL	TACTGGTAAGTCTGGGAAAGA	TACTGGTAAGTCTGGGAAAGA	-	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	TACTGGTAAGTCTGGGAAAGA	TACTGGTAAGTCTGGGAAAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	FGGY-69	NM_001113411	exon14	c.1485_1489del	p.495_497del	.	.	123	29	240	0	.	0	0	0	0	0
OR52H1	390067	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	5566652	5566652	+	Nonsense_Mutation	DEL	C	C	-	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	OR52H1-114	NM_001005289	exon1	c.102delG	p.W34X	.	.	72	27	99	0	.	0	0	0	0	0
PPP6R3	55291	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	68318634	68318637	+	Frame_Shift_Del	DEL	CATC	CATC	-	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	CATC	CATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	PPP6R3-91	NM_001164162	exon6	c.598_601del	p.200_201del	.	.	55	25	79	0	.	0	0	0	0	0
SCAF11	9169	broad.mit.edu	37	12	46320707	46320708	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	SCAF11-93	NM_004719	exon11	c.2776_2777del	p.926_926del	CTCCTTTCTCTCT	.	273	6	183	0	.	0	0	0	0	0
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu	37	20	46252817	46252817	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	NCOA3-229	NM_181659	exon4	c.246delA	p.I82fs	.	.	89	17	38	0	.	0	0	0	0	0
SBNO1	55206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123801801	123801802	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	SBNO1-292	NM_001167856	exon20	c.2902_2903insA	p.P968fs	.	.	115	36	91	0	.	0	0	0	0	0
TMCO3	55002	bcgsc.ca	37	13	114188424	114188425	+	In_Frame_Ins	INS	-	-	GGTTTTTTTTTT	rs141899812	bycluster;by1000genomes;alternate_allele	TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	TMCO3-90	NM_017905	exon9	c.1408_1409insGGTTTTTTTTTT	p.V470delinsGFFFF	GCGGCGGTTTTTC	.	244	5	207	0	.	0	0	0	0	0
INF2	64423	hgsc.bcm.edu;bcgsc.ca	37	14	105174895	105174896	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	INF2-492	NM_001031714	exon9	c.1858_1859insC	p.A620fs	.	.	43	22	44	0	.	0	0	0	0	0
PRKRA	8575	hgsc.bcm.edu	37	2	179306335	179306336	+	Splice_Site	DNP	AC	AC	GT	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	PRKRA		exon7	c.534+1G>A	.	TACTCACTAAAGA	.	80.0	5.0	61.0	1.0	.	0	0	0	0	0