Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
UBIAD1	29914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11346095	11346095	+	Silent	SNP	G	G	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	UBIAD1-90	NM_013319	exon2	c.G924C	p.L308L	CAAACTGCCCCAG	.	152	62	157	0	.	19	13	6	0	0
PADI3	51702	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	17609568	17609568	+	Silent	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	PADI3-132	NM_016233	exon16	c.G1989A	p.V663V	CATGGTGCCCTGA	.	62	13	53	0	.	0	0	0	0	0
ZDHHC18	84243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27176925	27176925	+	Silent	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ZDHHC18-90	NM_032283	exon4	c.G780A	p.T260T	CCTGACGTTGCGT	.	185	76	201	0	.	0	0	0	0	0
KIAA1522	57648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	33237745	33237745	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	KIAA1522-90	NM_020888	exon6	c.C2965A	p.P989T	GTGTCCCCTGAGA	.	40	13	31	0	.	20	9	11	0	0
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	39835802	39835802	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	MACF1-165	NM_012090	exon47	c.C6853G	p.P2285A	ATTCCACCTACGG	.	35	18	48	0	.	6	5	1	0	0
IER5	51278	hgsc.bcm.edu	37	1	181058618	181058618	+	Missense_Mutation	SNP	C	C	G	rs1416829		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	IER5-227	NM_016545	exon1	c.C580G	p.R194G	ACCCCCCGCGCTG	.	2	2	0	0	C|0.566;G|0.434	0	0	0	0	0
HMCN1	83872	bcgsc.ca	37	1	186094789	186094789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	HMCN1-113	NM_031935	exon82	c.C12553A	p.Q4185K	AATTCACAAGCCA	.	78	16	92	7	.	0	0	0	0	0
TMEM81	388730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205052751	205052751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	TMEM81-68	NM_203376	exon1	c.C698A	p.A233D	CCAATGGCAATTC	.	113	37	123	0	.	3	2	1	0	0
RBBP5	5929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205064022	205064022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	RBBP5-226	NM_005057	exon13	c.G1567A	p.E523K	TGAGTTCCGCCTG	.	143	63	152	1	.	3	0	3	0	0
CR2	1380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207642031	207642031	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	CR2-232	NM_001006658	exon3	c.A605C	p.K202T	CGGGAAAATGGAG	.	195	85	288	0	.	0	0	0	0	0
DCHS1	8642	hgsc.bcm.edu	37	11	6662787	6662787	+	Missense_Mutation	SNP	G	G	A	rs201684495		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	DCHS1-73	NM_003737	exon2	c.C58T	p.H20Y	GGAGGTGGGGCCT	.	4	2	0	0	.	0	0	0	0	0
OR4A16	81327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55110797	55110797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	OR4A16-69	NM_001005274	exon1	c.C121T	p.L41F	GGAAACCTCCTCA	.	180	64	202	0	.	0	0	0	0	0
ETS1	2113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	128360461	128360461	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ETS1-1270	NM_001143820	exon4	c.T225A	p.C75X	ATCTGCACATTCC	.	68	26	76	0	.	0	0	0	0	0
SLC6A13	6540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	335609	335609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	SLC6A13-90	NM_016615	exon9	c.T1007C	p.L336P	AAGCCCAGGATGG	.	77	46	58	0	.	172	47	125	0	0
TAS2R20	259295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	11150353	11150353	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	TAS2R20-90	NM_176889	exon1	c.T122A	p.I41N	GAGGAGATCTTTT	.	100	63	75	0	.	0	0	0	0	0
TBC1D15	64786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	72288466	72288466	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	TBC1D15-90	NM_022771	exon8	c.A709T	p.K237X	GCATAGAAAATTA	.	97	51	90	0	.	0	0	0	0	0
CEP290	80184	broad.mit.edu	37	12	88479916	88479916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	CEP290-96	NM_025114	exon34	c.G4337T	p.S1446I	GGCAAACTAGGGT	.	105	4	59	0	.	20	20	0	0	0
GALNT4	8693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	89918277	89918277	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	.	NM_003774	exon1	c.T50G	p.F17C	GTTAAAAACGCCA	.	56	24	59	0	.	4	2	2	0	0
CHPT1	56994	hgsc.bcm.edu	37	12	102091671	102091671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	CHPT1-90	NM_020244	exon1	c.C32A	p.P11Q	CCGCGCCGCGCTG	.	4	4	4	1	.	0	0	0	0	0
SLC7A1	6541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	30091728	30091728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	SLC7A1-90	NM_003045	exon10	c.A1492G	p.I498V	TTGAAATGTTCAC	.	323	93	293	0	.	0	0	0	0	0
EFNB2	1948	broad.mit.edu;bcgsc.ca	37	13	107148096	107148096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	EFNB2-91	NM_004093	exon3	c.G499A	p.D167N	CTTTACCTTGTCC	.	533	11	383	0	.	0	0	0	0	0
GJD2	57369	broad.mit.edu	37	15	35044907	35044907	+	Silent	SNP	C	C	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	GJD2-90	NM_020660	exon2	c.G738A	p.R246R	AGTTGGCCGGGAC	.	54	4	68	0	.	0	0	0	0	0
TRIP4	9325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	64702017	64702017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	TRIP4-188	NM_016213	exon7	c.T1033C	p.Y345H	GCAGAGTATCATA	.	75	25	83	0	.	0	0	0	0	0
ADCY9	115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4165346	4165346	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ADCY9-139	NM_001116	exon2	c.A98C	p.N33T	TTGGGGTTGATCT	.	29	12	23	0	.	1	1	0	0	0
SUPT6H	6830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27002076	27002076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	SUPT6H-93	NM_003170	exon5	c.T434C	p.I145T	AAGCTATTGCGGA	.	82	25	49	0	.	19	14	5	0	0
KRTAP1-1	81851	hgsc.bcm.edu	37	17	39197360	39197360	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	.	NM_030967	exon1	c.T290C	p.I97T	CCACCAATGCCAC	.	83	6	54	1	.	0	0	0	0	0
FSCN2	25794	hgsc.bcm.edu	37	17	79495866	79495866	+	Silent	SNP	G	G	A	rs34126129		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	.	NM_001077182	exon1	c.G309A	p.R103R	GCTGCGGTCCGAG	.	5	4	6	0	G|0.995;A|0.005	0	0	0	0	0
SF3A2	8175	hgsc.bcm.edu	37	19	2248401	2248401	+	Silent	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	SF3A2-90	NM_007165	exon9	c.G1251A	p.S417S	TCCGTCGGCTCCT	.	9	4	1	0	.	255	121	134	0	0
NDUFB7	4713	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	14677078	14677078	+	Splice_Site	SNP	C	C	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	NDUFB7-91	NM_004146	exon4	c.282-1G>T	.	ACATAGCTGGGGG	.	78	35	97	0	.	4	2	2	0	0
MAU2	23383	broad.mit.edu	37	19	19452209	19452209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	MAU2-91	NM_015329	exon7	c.C728T	p.A243V	TGGATGCCGGGCA	.	56	4	45	0	.	0	0	0	0	0
LGI4	163175	broad.mit.edu	37	19	35622732	35622732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	LGI4-91	NM_139284	exon5	c.C419T	p.P140L	AATCTGGGGAGGG	.	6	4	10	0	.	1	1	0	0	0
NCOA1	8648	broad.mit.edu	37	2	24930397	24930397	+	Silent	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	NCOA1-228	NM_147223	exon11	c.G2058A	p.R686R	AGAACGGCATAAA	.	178	6	157	0	.	7	7	0	0	0
MIR663B	100313824	bcgsc.ca	37	2	133014546	133014546	+	RNA	SNP	C	C	G	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	.	.	.	.	.	AAACCTCAGGCAC	.	45	6	41	1	.	9	9	0	0	0
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220338577	220338577	+	Silent	SNP	C	C	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	SPEG-383	NM_005876	exon18	c.C4399A	p.R1467R	ACCGCCCGAAACC	.	157	86	156	0	.	0	0	0	0	0
INHA	3623	hgsc.bcm.edu	37	2	220437360	220437360	+	Silent	SNP	C	C	G	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	INHA-91	NM_002191	exon1	c.C264G	p.A88A	CCCAGCCACAGGT	.	4	4	2	1	.	0	0	0	0	0
SRSF6	6431	hgsc.bcm.edu;broad.mit.edu	37	20	42087023	42087023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	SRSF6-289	NM_006275	exon2	c.G130A	p.D44N	TTCGAGGACTCCC	.	17	9	14	0	.	69	24	45	0	0
SEC14L4	284904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30891293	30891293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	SEC14L4-91	NM_001161368	exon5	c.G371A	p.R124H	TTGATGCGCTTCC	.	40	17	52	0	.	0	0	0	0	0
YWHAH	7533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	32352660	32352660	+	Silent	SNP	C	C	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	YWHAH-1082	NM_003405	exon2	c.C622T	p.L208L	GCTGAGCTGGACA	.	34	18	43	0	.	198	112	86	0	0
ATG7	10533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	11356947	11356947	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ATG7-90	NM_001136031	exon7	c.T658A	p.F220I	GATTTCTTCCAAG	.	71	30	66	0	.	6	1	5	0	0
DHX30	22907	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	47882520	47882520	+	Silent	SNP	C	C	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	DHX30-228	NM_138615	exon7	c.C520A	p.R174R	AGTATTCGACCAG	.	46	4	39	0	.	13	13	0	0	0
CELSR3	1951	broad.mit.edu	37	3	48696845	48696845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	CELSR3-523	NM_001407	exon1	c.C3223T	p.R1075W	TCACCCGCACCTC	.	185	4	197	0	.	0	0	0	0	0
ATP13A4	84239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	193132518	193132518	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ATP13A4-92	NM_032279	exon26	c.C2864G	p.P955R	AGCTTAGGGTAGG	.	68	23	89	0	.	1	0	1	0	0
ABLIM2	84448	broad.mit.edu	37	4	8021392	8021392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ABLIM2-47	NM_001130083	exon14	c.G1376A	p.G459D	TTTACGCCAGTGT	.	56	3	47	0	.	1	1	0	0	0
ANAPC4	29945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	25396298	25396298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ANAPC4-293	NM_013367	exon13	c.A947G	p.E316G	GTGCTGAACTTCA	.	103	43	145	1	.	2	2	0	0	0
PARM1	25849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	75937687	75937687	+	Silent	SNP	G	G	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	PARM1-1	NM_015393	exon2	c.G96C	p.P32P	TCTTCCGACAAAC	.	67	32	81	0	.	3	3	0	0	0
ENPEP	2028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	111397845	111397845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ENPEP-157	NM_001977	exon1	c.G275A	p.R92Q	ACTTTCGACTGCC	.	93	36	133	0	.	7	7	0	0	0
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	7820695	7820695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ADCY2-97	NM_020546	exon24	c.G3016A	p.V1006M	GGACCTGTGATAG	.	63	33	54	0	.	7	3	4	0	0
RPS14	6208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149827271	149827271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	RPS14-90	NM_001025071	exon2	c.A26G	p.K9R	TCCTTCTTTTCCT	.	148	67	143	0	.	1195	643	552	0	0
PRPF4B	8899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	4047415	4047415	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	PRPF4B-1308	NM_003913	exon7	c.C1868G	p.S623C	GTTCATCTCAGAA	.	195	67	128	0	.	0	0	0	0	0
INTS1	26173	hgsc.bcm.edu	37	7	1538639	1538639	+	Missense_Mutation	SNP	T	T	C	rs200286642		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	.	NM_001080453	exon8	c.A1109G	p.K370R	TCCAGCTTCTGCA	.	9	5	4	1	.	11	4	7	0	0
KCND2	3751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	119915491	119915491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	KCND2-517	NM_012281	exon1	c.G805T	p.A269S	GTGGTGGCCATCC	.	102	28	82	0	.	0	0	0	0	0
KLRG2	346689	broad.mit.edu	37	7	139164445	139164445	+	Silent	SNP	C	C	T	rs201132743		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	KLRG2-90	NM_198508	exon3	c.G933A	p.A311A	GGCCTGCGCTTCT	.	164	4	103	0	C|0.999;T|0.000	1	1	0	0	0
CDKN2B	1030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	22006244	22006244	+	Silent	SNP	G	G	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	CDKN2B-792	NM_004936	exon2	c.C159T	p.V53V	CATCATGACCTGC	.	22	8	49	0	.	0	0	0	0	0
NIPSNAP3B	55335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	107531256	107531256	+	Silent	SNP	T	T	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	NIPSNAP3B-92	NM_018376	exon3	c.T384A	p.I128I	GGAAATTACTTAC	.	77	38	95	0	.	3	1	2	0	0
CNTRL	11064	broad.mit.edu	37	9	123888062	123888062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	CNTRL-661	NM_007018	exon12	c.C1873A	p.L625M	GAATACCTGGGGA	.	114	4	143	0	.	0	0	0	0	0
WNK3	65267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	54319393	54319393	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	WNK3-441	NM_001002838	exon10	c.T1965A	p.H655Q	AAGGACATGTACA	.	28	21	46	0	.	0	0	0	0	0
GAPDH	2597	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	6646478	6646485	+	Frame_Shift_Del	DEL	TGCCTCCT	TGCCTCCT	-	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	TGCCTCCT	TGCCTCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	GAPDH-226	NM_002046	exon7	c.447_454del	p.149_152del	.	.	47	13	39	0	.	0	0	0	0	0
OR4K1	79544	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	20404312	20404313	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	OR4K1-71	NM_001004063	exon1	c.487_488del	p.163_163del	.	.	114	48	105	0	.	0	0	0	0	0
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	23927477	23927484	+	Frame_Shift_Del	DEL	TTAAAGGC	TTAAAGGC	-	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	TTAAAGGC	TTAAAGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	.	NM_138286	exon4	c.868_875del	p.290_292del	.	.	108	28	165	0	.	0	0	0	0	0
CMBL	134147	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	10288604	10288609	+	In_Frame_Del	DEL	AAGGCT	AAGGCT	-	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	AAGGCT	AAGGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	CMBL-69	NM_138809	exon3	c.248_253del	p.83_85del	.	.	101	32	131	0	.	0	0	0	0	0
CPEB4	80315	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	173317605	173317605	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	CPEB4-90	NM_030627	exon1	c.869delG	p.S290fs	.	.	277	108	376	0	.	0	0	0	0	0
STAG3L2	442582	broad.mit.edu	37	7	74300557	74300564	+	RNA	DEL	AGAGCTCC	AGAGCTCC	-	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	AGAGCTCC	AGAGCTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	.	.	.	.	.	CAGTGAAGAGCTC	.	265	7	152	0	.	0	0	0	0	0
C10orf95	79946	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	104211148	104211149	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	C10orf95-91	NM_024886	exon1	c.78_79insG	p.G26fs	.	.	42	18	55	0	.	0	0	0	0	0