Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
KIAA1522	57648	ucsc.edu;bcgsc.ca	37	1	33236309	33236309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	KIAA1522-90	NM_020888	exon6	c.G1529A	p.R510Q	ATCAGCGGGGCTT	.	37	4	33	0	.	44	44	0	0	0
FOXE3	2301	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	47882415	47882415	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	FOXE3-130	NM_012186	exon1	c.A428C	p.N143T	AGGGCAACTACTG	.	103	30	101	0	.	2	1	0	1	0
BCAR3	8412	hgsc.bcm.edu	37	1	94054978	94054978	+	Splice_Site	SNP	T	T	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	BCAR3-228	NM_003567	exon6	c.487-2A>G	.	GACACCTTTGGGA	.	31	2	41	0	.	2	2	0	0	0
SYPL2	284612	ucsc.edu	37	1	110022091	110022091	+	Missense_Mutation	SNP	A	A	G	rs201865079		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	SYPL2-91	NM_001040709	exon6	c.A740G	p.D247G	GCCAGGACCAGGA	.	83	1	90	1	A|0.994;G|0.006	24	18	6	0	0
PEA15	8682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160181403	160181403	+	Silent	SNP	C	C	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	PEA15-658	NM_003768	exon2	c.C69A	p.L23L	ACAGCTCAAGTCG	.	100	16	131	0	.	106	87	19	0	0
DENND1B	163486	hgsc.bcm.edu	37	1	197684159	197684159	+	Splice_Site	SNP	A	A	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	DENND1B-44	NM_001195215	exon4	c.126+2T>C	.	GTACCAACCTGGT	.	30	2	32	0	.	0	0	0	0	0
VIM	7431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	17276732	17276732	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	VIM-291	NM_003380	exon6	c.C923G	p.A308G	ATGACGCCCTGCG	.	116	17	134	0	.	2592	2221	365	3	3
C11orf49	79096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47074069	47074069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	C11orf49-90	NM_001003677	exon3	c.G280T	p.D94Y	AATGGCGGTAAGT	.	102	47	82	0	.	0	0	0	0	0
ANKRD13D	338692	hgsc.bcm.edu;bcgsc.ca	37	11	67059495	67059495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	ANKRD13D-91	NM_207354	exon6	c.A575G	p.D192G	ACCATGACCGGCA	.	57	4	101	0	.	30	28	1	1	0
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	73020470	73020470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	ARHGEF17-227	NM_014786	exon1	c.G787A	p.G263R	CTGCCTGGAGCCC	.	44	23	47	0	.	19	9	10	0	0
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	76890090	76890090	+	Splice_Site	SNP	G	G	T	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	MYO7A-138	NM_001127179	exon20	c.2283-1G>T	.	GTTTCAGGTCTAA	.	18	9	21	0	.	0	0	0	0	0
MED17	9440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	93542943	93542943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	MED17-187	NM_004268	exon11	c.C1645A	p.L549M	CAAGTACTGAGCT	.	163	71	189	0	.	47	24	23	0	0
VPS26B	112936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	134115448	134115448	+	Silent	SNP	C	C	T	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	VPS26B-90	NM_052875	exon6	c.C975T	p.T325T	GCGGACCCCCAGC	.	32	18	37	0	.	21	11	10	0	0
RPAP3	79657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48080648	48080648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	RPAP3-69	NM_024604	exon9	c.G907A	p.E303K	AGCATTCAATTGC	.	79	45	86	1	.	19	9	10	0	0
PLA2G4F	255189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42442584	42442584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	PLA2G4F-94	NM_213600	exon9	c.T872C	p.V291A	AGGGCCACAGAAC	.	29	15	31	0	.	0	0	0	0	0
TICRR	90381	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	90129030	90129030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	.	NM_152259	exon4	c.G1268A	p.R423H	TGTGCCGCACCAA	.	68	6	90	0	.	0	0	0	0	0
PKD1	5310	ucsc.edu	37	16	2168072	2168072	+	Silent	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	PKD1-91	NM_000296	exon5	c.C921T	p.F307F	GTCTCCGAAGTCC	.	26	2	37	0	.	4	4	0	0	0
KPNB1	3837	broad.mit.edu	37	17	45727756	45727756	+	Silent	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	KPNB1-229	NM_002265	exon2	c.A45A	p.G15G	AGATCGGCTGGAG	.	43	3	33	0	.	1	1	0	0	0
APCDD1	147495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	10487950	10487950	+	Missense_Mutation	SNP	G	G	A	rs112875590		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	APCDD1-90	NM_153000	exon5	c.G1460A	p.R487Q	ATGGCCGGGCCCC	.	149	44	152	1	G|0.999;A|0.001	7	6	0	1	0
DSG4	147409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	28980927	28980927	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	DSG4-177	NM_001134453	exon10	c.A1361T	p.K454M	TTGATAAGAAGTC	.	78	37	77	0	.	0	0	0	0	0
WDR18	57418	hgsc.bcm.edu;broad.mit.edu	37	19	992048	992048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	WDR18-91	NM_024100	exon8	c.A1025G	p.H342R	ACAAGCACCTGCT	.	27	16	9	0	.	65	37	27	1	0
NDUFA11	126328	ucsc.edu	37	19	5897010	5897010	+	Splice_Site	SNP	T	T	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	NDUFA11-90	NM_001193375	exon3	c.98-2A>T	.	CAGGCCTGCGAGA	.	102	1	129	0	.	0	0	0	0	0
TSHZ3	57616	hgsc.bcm.edu	37	19	31770237	31770237	+	Silent	SNP	A	A	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	TSHZ3-232	NM_020856	exon2	c.T462C	p.S154S	GCTGCTACTGCTG	.	29	2	35	0	.	6569	33	6530	4	2
AKT2	208	hgsc.bcm.edu	37	19	40743950	40743950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	AKT2-978	NM_001626	exon9	c.C757T	p.R253W	AAAACCGGGCCCG	.	27	2	26	0	.	242	228	14	0	0
KLK7	5650	hgsc.bcm.edu	37	19	51485616	51485616	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	KLK7-650	NM_001243126	exon2	c.C167G	p.A56G	AGGATAGCAGTAA	.	9	3	16	2	.	0	0	0	0	0
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56511120	56511120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	NLRP5-162	NM_153447	exon1	c.G29A	p.G10E	AACTTGGAGCTGC	.	234	35	241	0	.	0	0	0	0	0
APOB	338	bcgsc.ca	37	2	21232458	21232458	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	APOB-175	NM_000384	exon26	c.A7282C	p.K2428Q	ATGACTTTAATTT	.	107	4	108	0	.	0	0	0	0	0
PROM2	150696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	95941238	95941238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	PROM2-91	NM_001165977	exon2	c.G274A	p.A92T	GAGCTGGCCTCCG	.	82	27	88	0	.	0	0	0	0	0
ATG16L1	55054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234173559	234173559	+	Silent	SNP	T	T	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	ATG16L1-90	NM_017974	exon5	c.T411C	p.T137T	GCAGACTATCTCT	.	114	38	129	0	.	25	17	8	0	0
DZANK1	55184	hgsc.bcm.edu	37	20	18435935	18435935	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	.	NM_001099407	exon4	c.C334G	p.P112A	CTTCAGGAGAGAC	.	25	2	18	0	.	6	6	0	0	0
SLC19A1	6573	hgsc.bcm.edu	37	21	46935688	46935688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	SLC19A1-90	NM_194255	exon6	c.T1660C	p.S554P	GGCCTGAGGCTTG	.	57	4	65	0	.	14	14	0	0	0
TNXB	7148	hgsc.bcm.edu	37	6	32023635	32023635	+	Silent	SNP	A	A	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	TNXB-90	NM_019105	exon24	c.T8460C	p.G2820G	TGTCACACCCACG	.	71	5	109	0	.	0	0	0	0	0
SCRN1	9805	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	29994945	29994945	+	Missense_Mutation	SNP	C	C	T	rs75604334	byfrequency;alternate_allele	TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	SCRN1-92	NM_001145514	exon3	c.G251A	p.R84K	TAGGTCCTTGGAA	.	164	53	124	0	C|0.982;G|0.018	152	97	55	0	0
DOCK4	9732	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	111368503	111368503	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	DOCK4-26	NM_014705	exon52	c.C5728G	p.L1910V	GCCGCAGAGTCCG	.	113	6	98	0	.	21	21	0	0	0
GALNT11	63917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151805279	151805279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	GALNT11-90	NM_022087	exon6	c.T869C	p.V290A	CTGTCGTCCGCGG	.	143	106	90	0	.	418	155	263	0	0
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	2063780	2063780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	MYOM2-95	NM_003970	exon26	c.C3209T	p.T1070I	AAGCTACTGGCAT	.	79	36	128	0	.	1	0	1	0	0
OPLAH	26873	hgsc.bcm.edu	37	8	145110805	145110805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	OPLAH-68	NM_017570	exon16	c.A2134G	p.T712A	TCTTGGTCACCTC	.	14	2	16	0	.	21	21	0	0	0
CCDC180	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	100117239	100117239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	.	NM_020893	exon24	c.A3345G	p.I1115M	TTTCATAGAGAAA	.	108	48	112	0	.	1	0	1	0	0
DNAJC25-GNG10	552891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	114429094	114429094	+	Splice_Site	SNP	G	G	A	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	DNAJC25-GNG10-159	NM_004125	exon2	c.337-1G>A	.	GTTTCAGGTCTCT	.	43	14	56	0	.	1	0	1	0	0
ZER1	10444	hgsc.bcm.edu	37	9	131513498	131513498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	ZER1-91	NM_006336	exon7	c.A1088G	p.Y363C	TCCGTGTAGGCCT	.	34	3	32	0	.	61	61	0	0	0
CHDC2	286464	hgsc.bcm.edu	37	X	36156552	36156552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	.	NM_173695	exon10	c.T1231C	p.Y411H	ACTCTTTATGAAA	.	31	2	33	0	.	1	1	0	0	0
ZBTB33	10009	broad.mit.edu	37	X	119387346	119387346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	ZBTB33-132	NM_006777	exon2	c.C76T	p.R26C	GAGCAACGTGGCC	.	148	6	131	0	.	15	14	1	0	0
KIAA1704	55425	broad.mit.edu	37	13	45580365	45580367	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	KIAA1704-92	NM_018559	exon3	c.250_252del	p.84_84del	GATGACGATGATG	.	204	7	221	0	.	0	0	0	0	0
PVRL2	5819	broad.mit.edu	37	19	45349842	45349844	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	PVRL2-90	NM_002856	exon1	c.60_62del	p.20_21del	GTGGCCGCTGCTG	.	6	3	6	0	.	0	0	0	0	0
ARHGAP21	57584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	24885703	24885704	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	ARHGAP21-235	NM_020824	exon17	c.3443_3444insC	p.R1148fs	.	.	99	42	119	0	.	0	0	0	0	0
PTGDR	5729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	52734893	52734894	+	Missense_Mutation	DNP	CT	CT	AG	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	PTGDR		exon1	c.T362G	p.L121R	CGACACTGCAACT	.	231.0	81.0	309.0	0.0	.	0	0	0	0	0