Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
KIAA2013	90231	hgsc.bcm.edu	37	1	11986231	11986231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	KIAA2013-91	NM_138346	exon1	c.C64T	p.L22F	AGAGGAGGCGGCG	.	4	4	0	0	.	0	0	0	0	0
UBXN11	91544	hgsc.bcm.edu	37	1	26608861	26608861	+	Missense_Mutation	SNP	C	C	T	rs200313935		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	UBXN11-91	NM_183008	exon16	c.G1492A	p.G498S	CGGGACCGGGACC	.	32	18	16	0	C|0.988;T|0.012	0	0	0	0	0
UBXN11	91544	hgsc.bcm.edu	37	1	26608865	26608865	+	Silent	SNP	A	A	G	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	UBXN11-91	NM_183008	exon16	c.T1488C	p.G496G	ACCGGGACCGGGA	.	32	18	21	0	.	0	0	0	0	0
LAPTM5	7805	broad.mit.edu	37	1	31208088	31208088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	LAPTM5-226	NM_006762	exon7	c.C631T	p.R211W	AGCACCGCCACAC	.	99	5	112	0	.	31	31	0	0	0
ECHDC2	55268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	53362195	53362195	+	Silent	SNP	T	T	C	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	ECHDC2-90	NM_001198961	exon10	c.A876G	p.K292K	GGGTCATTTGCCA	.	49	13	75	0	.	32	17	15	0	0
RNF2	6045	broad.mit.edu	37	1	185060812	185060812	+	Silent	SNP	T	T	C	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	RNF2-658	NM_007212	exon3	c.T189C	p.T63T	CATGACTACAAAG	.	151	3	163	0	.	1	1	0	0	0
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	216262462	216262462	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	USH2A-115	NM_206933	exon23	c.C4778A	p.T1593N	GTTGTAGTTACTT	.	52	18	74	0	.	0	0	0	0	0
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	237730023	237730023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	RYR2-158	NM_001035	exon28	c.C3371G	p.P1124R	GTCAACCGGATCA	.	185	48	152	0	.	0	0	0	0	0
GAD2	2572	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	26506915	26506915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	GAD2-515	NM_000818	exon3	c.C281T	p.A94V	TCCATGCAACAGG	.	195	54	77	0	.	0	0	0	0	0
KIF5B	3799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	32326205	32326205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	KIF5B-399	NM_004521	exon8	c.G688T	p.V230F	AATCAACCAGATA	.	77	10	89	0	.	5	4	1	0	0
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	49983779	49983779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	WDFY4-22	NM_020945	exon15	c.C2791T	p.P931S	GGAATTCCCTCAT	.	92	30	93	0	.	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1093050	1093050	+	Silent	SNP	C	C	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	MUC2-90	NM_002457	exon30	c.C4869A	p.G1623G	CACTGGCACACAG	.	88	7	79	1	.	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1093061	1093061	+	Missense_Mutation	SNP	C	C	T	rs199518058		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	MUC2-90	NM_002457	exon30	c.C4880T	p.P1627L	AGACCCCAACCCC	.	90	7	86	1	.	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1093204	1093204	+	Missense_Mutation	SNP	C	C	A	rs56299570		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	MUC2-90	NM_002457	exon30	c.C5023A	p.P1675T	CCAACCCCAACAG	.	55	5	70	1	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	96	6	38	0	.	0	0	0	0	0
STIM1	6786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4104179	4104179	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	STIM1-91	NM_003156	exon9	c.T1205G	p.L402R	CTTCCCTGGATGA	.	324	102	365	0	.	1	1	0	0	0
PRPH	5630	hgsc.bcm.edu	37	12	49689404	49689404	+	Missense_Mutation	SNP	G	G	T	rs58599399		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	PRPH-90	NM_006262	exon1	c.G421T	p.D141Y	CGCGCCGACCAGC	.	99	56	2	0	G|0.999;T|0.001	0	0	0	0	0
GNS	2799	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	65152878	65152878	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	GNS-514	NM_002076	exon1	c.T179A	p.V60E	CCGAGCACTTCGT	.	229	52	159	1	.	0	0	0	0	0
TMTC2	160335	broad.mit.edu	37	12	83251082	83251082	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	TMTC2-92	NM_152588	exon2	c.A377C	p.H126P	CTTCTCACCCCAT	.	181	33	119	21	.	0	0	0	0	0
CEP290	80184	broad.mit.edu;bcgsc.ca	37	12	88471486	88471486	+	Silent	SNP	G	G	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	CEP290-96	NM_025114	exon40	c.C5574A	p.T1858T	TCCACTGGTTAGT	.	19	4	23	0	.	0	0	0	0	0
RXFP2	122042	bcgsc.ca	37	13	32352703	32352703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	RXFP2-90	NM_001166058	exon9	c.G768T	p.M256I	CCAAATGCCTCAA	.	63	4	49	0	.	0	0	0	0	0
ZIC5	85416	hgsc.bcm.edu	37	13	100623585	100623585	+	Silent	SNP	C	C	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	ZIC5-90	NM_033132	exon1	c.G345A	p.P115P	AGCCTCCGGGTGT	.	14	9	0	0	.	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	61	5	24	0	.	2	2	0	0	0
HECTD1	25831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	31576342	31576342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	HECTD1-570	NM_015382	exon38	c.C6736T	p.H2246Y	GGAAATGAAACAG	.	161	36	191	0	.	4	2	2	0	0
KIF7	374654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90174782	90174782	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	KIF7-523	NM_198525	exon15	c.A3055C	p.K1019Q	GCTGCTTGAGCAG	.	100	32	69	0	.	0	0	0	0	0
UBALD1	124402	broad.mit.edu	37	16	4659850	4659850	+	Silent	SNP	T	T	G	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	.	NM_145253	exon3	c.A318C	p.S106S	CGGGGGTGACGTG	.	61	26	18	7	.	4	1	3	0	0
TRIM72	493829	hgsc.bcm.edu	37	16	31226442	31226442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	TRIM72-44	NM_001008274	exon2	c.G383A	p.R128H	ACGCACGCCTCAA	.	31	19	0	0	.	0	0	0	0	0
ZDHHC7	55625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	85010785	85010785	+	Silent	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	ZDHHC7-289	NM_001145548	exon8	c.C777T	p.F259F	GCACAGGAAGATC	.	209	45	165	0	.	3	3	0	0	0
ARHGAP23	57636	hgsc.bcm.edu	37	17	36666551	36666551	+	Silent	SNP	T	T	C	rs62074752		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	ARHGAP23-205	NM_001199417	exon24	c.T3819C	p.D1273D	GGGGGATGAGGCG	.	15	15	0	0	C|0.823;G|0.000;T|0.177	0	0	0	0	0
KRTAP4-6	81871	hgsc.bcm.edu	37	17	39296599	39296599	+	Silent	SNP	T	T	C	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	.	NM_030976	exon1	c.A141G	p.R47R	CTGGGGTCTGCAG	.	129	11	78	0	.	0	0	0	0	0
LOC100653515	0	broad.mit.edu	37	17	76888505	76888505	+	Silent	SNP	T	T	G	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	.	NM_001243540	exon3	c.A81C	p.S27S	CGGGCCTGAGGAG	.	345	28	264	8	.	0	0	0	0	0
FSCN2	25794	hgsc.bcm.edu	37	17	79504052	79504052	+	Silent	SNP	C	C	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	.	NM_001077182	exon5	c.C1497A	p.G499G	CTCGGGCCTGCTG	.	8	5	0	0	.	0	0	0	0	0
ZNF567	163081	broad.mit.edu	37	19	37210687	37210687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	ZNF567-90	NM_152603	exon4	c.G968A	p.R323H	TCATTCGTCATCA	.	111	5	85	0	.	0	0	0	0	0
OXER1	165140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	42990999	42990999	+	Silent	SNP	C	C	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	OXER1-500	NM_148962	exon1	c.G321T	p.L107L	CCCCACCAGGCCC	.	100	34	100	0	.	5	5	0	0	0
C2orf81	388963	broad.mit.edu	37	2	74642280	74642280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	.	NM_001145054	exon4	c.A943C	p.T315P	GGCGGGTGGCGCC	.	122	32	30	4	.	0	0	0	0	0
DNMT3B	1789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31389169	31389169	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	DNMT3B-660	NM_006892	exon19	c.G2082C	p.W694C	CTTCTGGATGTTT	.	264	77	216	0	.	0	0	0	0	0
L3MBTL1	26013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	42162966	42162966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	L3MBTL1-227	NM_032107	exon15	c.G1576A	p.V526M	GAGGCTGTGGACC	.	101	25	79	0	.	0	0	0	0	0
SLC13A3	64849	broad.mit.edu	37	20	45194975	45194975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	SLC13A3-91	NM_022829	exon11	c.C1387T	p.P463S	CGGGGGGCACATT	.	236	4	227	0	.	5	5	0	0	0
PREX1	57580	broad.mit.edu	37	20	47258948	47258948	+	Silent	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	PREX1-231	NM_020820	exon28	c.C3681T	p.N1227N	TACCTGGTTAAAG	.	140	4	142	1	.	0	0	0	0	0
FAM65C	140876	broad.mit.edu	37	20	49208955	49208955	+	Missense_Mutation	SNP	C	C	G	rs77093450	alternate_allele	TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	FAM65C-92	NM_080829	exon19	c.G2491C	p.G831R	GAGTGCCGTCCAG	.	127	6	98	0	.	2	2	0	0	0
DOPEY2	9980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	37642372	37642372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	DOPEY2-91	NM_005128	exon27	c.C5549T	p.T1850I	AGCAAACCAGCTG	.	82	25	79	0	.	6	4	2	0	0
KCNJ4	3761	broad.mit.edu	37	22	38822920	38822920	+	Silent	SNP	A	A	C	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	KCNJ4-90	NM_004981	exon2	c.T1218G	p.G406G	CTTGGAACCCGCC	.	191	23	66	4	.	0	0	0	0	0
ZBED4	9889	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50279802	50279802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	ZBED4-92	NM_014838	exon2	c.C2492T	p.T831M	GCCATACGGTGAA	.	159	49	114	1	.	0	0	0	0	0
OSBPL11	114885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	125298795	125298795	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	OSBPL11-135	NM_022776	exon3	c.T323A	p.L108H	CCTGCAAGCTGCA	.	130	25	101	0	.	3	2	1	0	0
NPHP3	27031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	132418235	132418235	+	Silent	SNP	A	A	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	NPHP3-91	NM_153240	exon13	c.T1947A	p.I649I	AGAAACAATTACT	.	61	22	48	0	.	0	0	0	0	0
MUC4	4585	broad.mit.edu	37	3	195511447	195511447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	MUC4-90	NM_018406	exon2	c.C7004T	p.T2335M	AGAGGCGTGGTGT	.	416	4	236	1	.	0	0	0	0	0
SDHA	6389	hgsc.bcm.edu	37	5	218487	218487	+	Missense_Mutation	SNP	G	G	A	rs187964306		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	SDHA-226	NM_004168	exon1	c.G17A	p.G6D	TCCGGGGCCTGTC	.	14	9	0	0	G|0.996;A|0.004	16	8	8	0	0
NSUN2	54888	hgsc.bcm.edu	37	5	6633071	6633071	+	Missense_Mutation	SNP	G	G	A	rs181415619		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	NSUN2-91	NM_017755	exon1	c.C22T	p.R8W	GCCGCCGACCCCG	.	7	7	0	0	G|0.974;A|0.026	0	0	0	0	0
ISL1	3670	broad.mit.edu	37	5	50687165	50687165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	ISL1-515	NM_002202	exon5	c.G823T	p.G275C	CACGACGGTGGCT	.	142	5	113	0	.	0	0	0	0	0
REV3L	5980	ucsc.edu;bcgsc.ca	37	6	111701285	111701285	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	REV3L-294	NM_002912	exon11	c.G1354T	p.E452X	TTTCTTCATCATC	.	109	35	121	2	.	0	0	0	0	0
SLC22A3	6581	hgsc.bcm.edu	37	6	160769796	160769796	+	Silent	SNP	C	C	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	SLC22A3-517	NM_021977	exon1	c.C345T	p.A115A	ACTCGCCGCCTTC	.	23	11	0	0	.	0	0	0	0	0
TBP	6908	hgsc.bcm.edu	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	TBP-91	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	75	10	58	0	.	2	2	0	0	0
TAF6	6878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99707631	99707631	+	Silent	SNP	G	G	A	rs148894017		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	TAF6-91	NM_001190415	exon12	c.C1335T	p.D445D	AGGGCCGTCCAGC	.	155	37	124	0	G|1.000;A|0.000	35	23	11	1	0
SSPO	23145	hgsc.bcm.edu	37	7	149487608	149487608	+	Splice_Site	SNP	T	T	G	rs1635798		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	.	NM_198455	exon32	c.4921+1T>G	.	CCTGCGTTGAGGC	.	4	4	0	0	T|0.784;G|0.216	0	0	0	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174500	150174500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	GIMAP8-95	NM_175571	exon5	c.G1630T	p.A544S	AAAACAGCTGTGG	.	194	8	149	0	.	1	1	0	0	0
HR	55806	hgsc.bcm.edu	37	8	21974513	21974513	+	Missense_Mutation	SNP	G	G	C	rs143782421		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	HR-154	NM_005144	exon17	c.C3253G	p.P1085A	TGCCTGGGGCGCC	.	17	8	6	0	G|0.994;C|0.006	0	0	0	0	0
HR	55806	hgsc.bcm.edu	37	8	21974550	21974550	+	Silent	SNP	C	C	T	rs146855847		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	HR-154	NM_005144	exon17	c.G3216A	p.V1072V	CGGGCACACCTCA	.	15	5	10	0	C|0.994;T|0.006	0	0	0	0	0
STMN4	81551	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	27099960	27099960	+	Silent	SNP	G	G	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	STMN4-154	NM_030795	exon3	c.C63T	p.S21S	GAAGCAGGAGCAG	.	138	43	113	1	.	0	0	0	0	0
C9orf156	51531	broad.mit.edu	37	9	100672508	100672508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	C9orf156-90	NM_016481	exon4	c.C800A	p.A267E	TCTTCTGCCACGC	.	207	6	151	0	.	6	6	0	0	0
AKNA	80709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	117143567	117143567	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	AKNA-94	NM_030767	exon2	c.G47T	p.G16V	CCCTTCCCCAGGC	.	83	25	38	0	.	2	2	0	0	0
UBXN11	91544	hgsc.bcm.edu	37	1	26608848	26608853	+	In_Frame_Del	DEL	CTGGGG	CTGGGG	-	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	CTGGGG	CTGGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	UBXN11-91	NM_183008	exon16	c.1500_1505del	p.500_502del	.	.	25	13	11	0	.	0	0	0	0	0
F12	2161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176833055	176833058	+	Frame_Shift_Del	DEL	AGTG	AGTG	-	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	AGTG	AGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	F12-90	NM_000505	exon3	c.120_123del	p.40_41del	.	.	71	23	63	0	.	0	0	0	0	0
OBSCN	84033	broad.mit.edu	37	1	228444409	228444410	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	OBSCN-403	NM_001271223	exon16	c.4643_4644insG	p.A1548fs	CCCAGGCGGGGGC	.	388	8	224	0	.	0	0	0	0	0
PTGDR2	11251	hgsc.bcm.edu	37	11	60620166	60620167	+	In_Frame_Ins	INS	-	-	GCG	rs55642873		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	.	NM_004778	exon2	c.1030_1031insCGC	p.T344delinsRT	.	.	48	12	1	0	.	0	0	0	0	0
USP31	57478	hgsc.bcm.edu	37	16	23160421	23160422	+	In_Frame_Ins	INS	-	-	GAGGAGGGC	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	USP31-663	NM_020718	exon1	c.171_172insGCCCTCCTC	p.S57delinsSPSS	.	.	58	12	32	0	.	0	0	0	0	0
PRDM13	59336	hgsc.bcm.edu	37	6	100061624	100061625	+	In_Frame_Ins	INS	-	-	CCG	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	PRDM13-135	NM_021620	exon4	c.1113_1114insCCG	p.D371delinsDP	.	.	13	11	0	0	.	0	0	0	0	0