Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
TAS1R3	83756	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1269265	1269265	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TAS1R3-22	NM_152228	exon6	c.G1980A	p.V660V	CTTCGTGGAGTCA	.	32	9	43	0	.	0	0	0	0	0
EPHA8	2046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22902942	22902942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	EPHA8-1380	NM_020526	exon3	c.G392A	p.R131H	CGGACCGCGACCT	.	49	22	104	0	.	0	0	0	0	0
KDM4A	9682	broad.mit.edu	37	1	44169937	44169937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	KDM4A-227	NM_014663	exon22	c.A3091G	p.T1031A	ATTTTCACAGAGA	.	182	4	241	0	.	103	103	0	0	0
SLC6A9	6536	broad.mit.edu	37	1	44467233	44467233	+	Silent	SNP	G	G	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SLC6A9-90	NM_201649	exon9	c.C1248G	p.S416S	GAGGATGGAGAAG	.	115	4	218	0	.	7	7	0	0	0
FGGY	55277	broad.mit.edu	37	1	59812021	59812021	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	FGGY-69	NM_001113411	exon4	c.G416C	p.G139A	TCGGGGGGGTGAT	.	50	4	56	0	.	53	53	0	0	0
VANGL1	81839	ucsc.edu	37	1	116226588	116226588	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	VANGL1-226	NM_001172412	exon6	c.C970T	p.Q324X	ACTGGCCAGTCCC	.	53	5	129	0	.	24	23	0	1	0
PSMB4	5692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151372078	151372078	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PSMB4-92	NM_002796	exon1	c.G15A	p.L5L	GTTTTTGGGGTCG	.	135	55	274	1	.	87	45	42	0	0
RRNAD1	51093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156705540	156705540	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	RRNAD1-90	NM_015997	exon7	c.G1145A	p.R382Q	TACAGCGAGTGGG	.	76	37	145	2	.	25	19	6	0	0
INSRR	3645	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156823725	156823725	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	INSRR-1403	NM_014215	exon2	c.C456T	p.T152T	GTCAATGGTGGAG	.	17	5	42	0	.	0	0	0	0	0
PLEKHA6	22874	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204226699	204226699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PLEKHA6-654	NM_014935	exon9	c.G1306A	p.E436K	CCAGCTCATCATA	.	20	12	25	0	.	26	15	11	0	0
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	211192165	211192165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	KCNH1-94	NM_172362	exon6	c.C992T	p.A331V	TGATCAGCAAAAC	.	171	59	229	1	.	0	0	0	0	0
SPATA17	128153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	217975148	217975148	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SPATA17-69	NM_138796	exon9	c.G961T	p.E321X	TACAAAGAACAAT	.	62	28	48	0	.	5	2	3	0	0
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228494234	228494234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	OBSCN-403	NM_001271223	exon55	c.G14692A	p.G4898S	CTTCAGGGCTGCA	.	61	30	99	0	.	5	0	5	0	0
ADAMTS14	140766	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	72503320	72503320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ADAMTS14-232	NM_139155	exon13	c.G1950T	p.E650D	GTGTGAGCTGATC	.	47	15	93	0	.	2	0	2	0	0
CPEB3	22849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	93812079	93812079	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	CPEB3-90	NM_014912	exon10	c.T1987C	p.C663R	ATTCACAGTAATA	.	45	19	86	0	.	20	10	10	0	0
KNDC1	85442	broad.mit.edu	37	10	135012252	135012252	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	KNDC1-229	NM_152643	exon14	c.G2240C	p.G747A	CTCTTGGGGCGTC	.	5	3	13	0	.	8	2	6	0	0
SMPD1	6609	hgsc.bcm.edu	37	11	6411953	6411953	+	Missense_Mutation	SNP	C	C	G	rs200577287	alternate_allele	TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SMPD1-90	NM_000543	exon1	c.C125G	p.A42G	CGCTGGCGCTGGC	.	27	2	31	2	.	0	0	0	0	0
HARBI1	283254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46637368	46637368	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	HARBI1-90	NM_173811	exon2	c.G420T	p.G140G	TGGCATCCCTGCC	.	226	84	417	0	.	2	0	2	0	0
PPP6R3	55291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	68377390	68377390	+	Silent	SNP	T	T	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PPP6R3-91	NM_001164160	exon24	c.T2487A	p.S829S	ACTGTCTACCTCT	.	124	54	205	0	.	81	43	38	0	0
MMP3	4314	ucsc.edu;bcgsc.ca	37	11	102713447	102713447	+	Silent	SNP	G	G	T	rs41380244	byfrequency;alternate_allele	TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	MMP3-226	NM_002422	exon2	c.C306A	p.T102T	AGGAAAGGTTCTG	.	35	19	75	0	G|0.673;C|0.327	0	0	0	0	0
ANKK1	255239	hgsc.bcm.edu;broad.mit.edu	37	11	113270078	113270078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ANKK1-628	NM_178510	exon8	c.A1387G	p.T463A	GGGTGGACCCCTC	.	9	3	15	0	.	0	0	0	0	0
PEX5	5830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	7343122	7343122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PEX5-91	NM_001131023	exon2	c.T149C	p.V50A	AGGCAGTGAGTGT	.	21	11	22	0	.	79	2	77	0	0
GSG1	83445	broad.mit.edu;bcgsc.ca	37	12	13243503	13243503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	GSG1-90	NM_001080554	exon2	c.C298T	p.R100W	AGAACCGGTCATC	.	147	9	208	0	.	0	0	0	0	0
IPO8	10526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	30790088	30790088	+	Silent	SNP	C	C	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	IPO8-227	NM_006390	exon22	c.G2523C	p.L841L	GATACTCAGTCCT	.	126	78	93	0	.	114	44	69	1	0
FAM60A	58516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	31435663	31435663	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	FAM60A-90	NM_021238	exon7	c.T649G	p.S217A	GAGTGGAGATGGG	.	94	51	112	0	.	140	43	97	0	0
FMNL3	91010	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	50041978	50041978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	FMNL3-228	NM_175736	exon22	c.G2674A	p.E892K	TTGCCTCAGCCGT	.	97	18	127	0	.	0	0	0	0	0
KRT83	3889	broad.mit.edu;ucsc.edu	37	12	52708468	52708468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	KRT83-91	NM_002282	exon9	c.G1429A	p.G477S	GCTGGCCACAGGG	.	14	5	17	0	.	0	0	0	0	0
HSP90B1	7184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	104336447	104336447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	HSP90B1-93	NM_003299	exon12	c.T1517C	p.L506P	CACGTCTTGCTAA	.	159	94	115	0	.	4615	1355	3260	0	0
MYO1H	283446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	109834250	109834250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	.	NM_001101421	exon3	c.C304T	p.L102F	TTCATCCTCATTT	.	88	46	61	0	.	0	0	0	0	0
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	124848291	124848291	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	NCOR2-229	NM_006312	exon23	c.T2862C	p.N954N	TGAGGCATTGGCC	.	145	77	190	0	.	81	31	49	0	1
KBTBD6	89890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	41704906	41704906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	KBTBD6-92	NM_152903	exon1	c.A1742G	p.N581S	ACCCGGTTCTTTT	.	257	154	230	0	.	14	5	9	0	0
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	101944368	101944368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	NALCN-167	NM_052867	exon9	c.C1020A	p.S340R	AGTGCTGCTTCTC	.	52	33	69	0	.	0	0	0	0	0
SIPA1L1	26037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	72055716	72055716	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SIPA1L1-156	NM_015556	exon2	c.T1127C	p.L376P	GACCTCTGTCTCA	.	68	25	111	0	.	74	44	30	0	0
SIPA1L1	26037	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	72055734	72055734	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SIPA1L1-156	NM_015556	exon2	c.T1145A	p.F382Y	CCAGTTTTAGCTC	.	52	18	101	0	.	76	39	37	0	0
THBS1	7057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	39885267	39885267	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	THBS1-653	NM_003246	exon18	c.T2834C	p.I945T	ATGACATCTGTCC	.	73	33	104	0	.	95	36	59	0	0
EPB42	2038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43508525	43508525	+	Missense_Mutation	SNP	C	C	T	rs202154600		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	EPB42-92	NM_000119	exon2	c.G227A	p.R76H	GGAGCGCGGAAGT	.	72	33	121	1	C|0.999;T|0.001	0	0	0	0	0
TLN2	83660	ucsc.edu	37	15	63047869	63047869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TLN2-573	NM_015059	exon34	c.G4615A	p.A1539T	AGCACTGCCAACC	.	37	4	66	0	.	33	33	0	0	0
HMG20A	10363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	77756662	77756662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	HMG20A-228	NM_018200	exon4	c.A170G	p.Q57R	TCTCTCAAGGTCA	.	93	38	101	0	.	32	19	13	0	0
TSC2	7249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2130345	2130345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TSC2-1908	NM_001114382	exon30	c.G3577A	p.G1193S	ACCCAGGGCTGGG	.	98	25	118	0	.	82	55	27	0	0
NLRC3	197358	ucsc.edu	37	16	3613310	3613310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	NLRC3-96	NM_178844	exon5	c.G1628A	p.R543Q	TGGGTCCGGTAGG	.	24	4	25	0	.	0	0	0	0	0
LOC81691	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20851091	20851091	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	LOC81691-92	NM_030941	exon14	c.C1398T	p.A466A	GCAGGCCAGAGTG	.	470	297	479	1	.	1	0	1	0	0
CTDNEP1	23399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7149598	7149598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	CTDNEP1-91	NM_001143775	exon5	c.T452C	p.I151T	TTAAGAATGCTTC	.	154	42	155	0	.	274	188	86	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	436	39	376	26	.	54	9	45	0	0
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	16089949	16089949	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	NCOR1-229	NM_001190440	exon2	c.C161G	p.S54X	AGCTGTGATGCCT	.	98	29	70	0	.	104	54	50	0	0
SRCIN1	80725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	36708962	36708962	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	.	NM_025248	exon12	c.G2331C	p.K777N	CCCACCCTTGAGC	.	99	32	121	0	.	0	0	0	0	0
CASC3	22794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38319005	38319005	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	CASC3-91	NM_007359	exon6	c.G636A	p.W212X	GCTATGGAAGGAT	.	59	15	67	0	.	66	63	3	0	0
MPO	4353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	56348163	56348163	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	MPO-156	NM_000250	exon12	c.T2092A	p.S698T	GCAATGAGATCTG	.	93	57	144	0	.	0	0	0	0	0
INTS2	57508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	59981846	59981846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	INTS2-206	NM_020748	exon9	c.C1306A	p.L436I	CCAGTAGCATACA	.	28	19	37	1	.	9	6	3	0	0
PALM	5064	ucsc.edu;bcgsc.ca	37	19	731193	731193	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PALM-68	NM_002579	exon5	c.C368G	p.P123R	CAGCCCCGAGTCC	.	18	5	44	0	.	57	39	18	0	0
PIP5K1C	23396	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	3648675	3648675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PIP5K1C-267	NM_001195733	exon9	c.G1159A	p.G387R	GCTCCCCGCGGCC	.	46	24	99	0	.	41	22	19	0	0
APBA3	9546	bcgsc.ca	37	19	3760228	3760228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	APBA3-90	NM_004886	exon2	c.G35A	p.G12E	GGAGGCCCCGAAG	.	22	8	68	0	.	23	12	11	0	0
PSMD8	5714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38874011	38874011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PSMD8-68	NM_002812	exon7	c.A1034G	p.Q345R	CCCGGCAGCTGGA	.	28	9	66	0	.	127	73	54	0	0
ZNF180	7733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44981073	44981073	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ZNF180-92	NM_013256	exon5	c.C1625G	p.T542S	GTGTGAGTTCTTT	.	89	33	96	0	.	4	2	2	0	0
RSPH6A	81492	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46317979	46317979	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	RSPH6A-91	NM_030785	exon1	c.C456T	p.Y152Y	TGTCTGGTAGAGG	.	50	12	101	0	.	0	0	0	0	0
LILRA3	11026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54803120	54803120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	LILRA3-91	NM_006865	exon4	c.C557A	p.P186H	CTCACGGGGCCCA	.	98	44	215	0	.	0	0	0	0	0
PPP6R1	22870	ucsc.edu	37	19	55752390	55752390	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PPP6R1-67	NM_014931	exon10	c.G1219C	p.V407L	TGCTCACGCATCC	.	4	1	13	0	.	86	38	48	0	0
ZNF324B	388569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58966903	58966903	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ZNF324B-91	NM_207395	exon4	c.T592A	p.C198S	AAGCCATGTGCAC	.	44	17	117	0	.	3	3	0	0	0
PAPOLG	64895	broad.mit.edu	37	2	61009021	61009021	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PAPOLG-69	NM_022894	exon11	c.T908C	p.V303A	CACAGGTAAATCC	.	136	4	102	0	.	0	0	0	0	0
TGFA	7039	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	70742029	70742029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TGFA-683	NM_001099691	exon2	c.C56T	p.A19V	TGGCACGCAGCCA	.	49	24	70	1	.	17	10	7	0	0
DCTN1	1639	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74597431	74597431	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	DCTN1-95	NM_004082	exon12	c.A1169T	p.K390M	TGGAGCTTCACAT	.	69	22	79	0	.	138	92	46	0	0
MAP4K4	9448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	102493544	102493544	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	MAP4K4-547	NM_145686	exon25	c.C2988A	p.I996I	TCTTATCAACCGA	.	94	54	54	0	.	99	44	55	0	0
UPP2	151531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	158971732	158971732	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	UPP2-90	NM_001135098	exon5	c.A471G	p.R157R	AGACAGATACTGT	.	131	39	140	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179468605	179468605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TTN-636	NM_001267550	exon282	c.T54809C	p.I18270T	TTACATATGGGAT	.	78	28	105	0	.	4	3	1	0	0
RPL37A	6168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	217364692	217364692	+	Silent	SNP	T	T	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	RPL37A-91	NM_000998	exon3	c.T153A	p.A51A	ACGAGCTGTGGGG	.	177	92	159	0	.	3198	1049	2149	0	0
SP110	3431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	231077477	231077477	+	Silent	SNP	T	T	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SP110-155	NM_001185015	exon5	c.A600C	p.S200S	CTCACCTGAAGTG	.	274	147	352	2	.	0	0	0	0	0
MMP24	10893	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33851638	33851638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	.	NM_006690	exon5	c.C862A	p.L288M	CACGCGCTGGGAC	.	12	7	24	0	.	84	25	59	0	0
EPB41L1	2036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	34800245	34800245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	EPB41L1-93	NM_001258329	exon17	c.A2131G	p.I711V	AAGAAGATTGAGC	.	95	33	93	0	.	286	182	104	0	0
NPEPL1	79716	hgsc.bcm.edu;broad.mit.edu	37	20	57276200	57276200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	.	NM_024663	exon6	c.A808G	p.S270G	GGCCTCAGCATCA	.	9	4	19	0	.	0	0	0	0	0
SETD4	54093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	37410517	37410517	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SETD4-154	NM_017438	exon10	c.G1119C	p.K373N	ACTTGTCTTCTCA	.	133	62	138	0	.	9	7	2	0	0
CERK	64781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	47108141	47108141	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	CERK-251	NM_022766	exon4	c.A429C	p.K143N	TTGTCCTTTTCCT	.	66	26	54	0	.	30	15	15	0	0
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47049869	47049869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	NBEAL2-69	NM_015175	exon51	c.G7816A	p.A2606T	CACCTGGCATTGG	.	43	25	33	0	.	51	17	34	0	0
NICN1	84276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49463424	49463424	+	Silent	SNP	C	C	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	NICN1-90	NM_032316	exon3	c.G315C	p.L105L	GTCACACAGCATC	.	41	13	54	0	.	3	2	1	0	0
SFMBT1	51460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52988412	52988412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SFMBT1-91	NM_016329	exon3	c.T44C	p.M15T	TCTTCCATACCAG	.	226	135	223	0	.	28	8	20	0	0
LRIG1	26018	broad.mit.edu	37	3	66460690	66460690	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	LRIG1-230	NM_015541	exon7	c.G798T	p.L266L	GTACTCCAGGTGC	.	275	8	250	0	.	0	0	0	0	0
ZBTB11	27107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	101390027	101390027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ZBTB11-91	NM_014415	exon3	c.T725C	p.L242P	ATAAAAAGATCTC	.	101	29	82	0	.	19	13	6	0	0
SLCO2A1	6578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	133692538	133692538	+	Silent	SNP	G	G	C	rs150677069	alternate_allele	TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SLCO2A1-90	NM_005630	exon3	c.C366G	p.S122S	GGGCTCGGAGAGG	.	34	9	43	0	G|1.000;A|0.000	195	141	54	0	0
ATP13A3	79572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	194146121	194146121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ATP13A3-69	NM_024524	exon29	c.C3263T	p.A1088V	GCAATTGCCACTA	.	101	54	69	0	.	109	26	83	0	0
ZBTB49	166793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	4322599	4322599	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ZBTB49-92	NM_145291	exon8	c.C1854A	p.S618S	TTTCTCCCAAGAC	.	39	21	62	0	.	2	0	2	0	0
CCKAR	886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	26483517	26483517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	CCKAR-523	NM_000730	exon5	c.G1030A	p.E344K	GGCGCTCTGCGGA	.	77	34	120	0	.	1	1	0	0	0
ANXA3	306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	79516549	79516549	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ANXA3-90	NM_005139	exon8	c.A498G	p.E166E	AGATGAAAGTCTG	.	259	95	265	0	.	0	0	0	0	0
PLRG1	5356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	155470082	155470082	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PLRG1-90	NM_002669	exon2	c.A15G	p.V5V	TTTCTGTACCTCC	.	29	11	31	0	.	0	0	0	0	0
SLC6A18	348932	broad.mit.edu	37	5	1225707	1225707	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SLC6A18-91	NM_182632	exon1	c.G115C	p.G39R	GGACTGGGGAACA	.	52	25	137	0	.	0	0	0	0	0
TMEM167A	153339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82357708	82357708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TMEM167A-90	NM_174909	exon3	c.T136C	p.C46R	TGGCACACTTCCA	.	61	31	67	1	.	0	0	0	0	0
PCSK1	5122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	95728748	95728748	+	Missense_Mutation	SNP	C	C	T	rs140941383		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PCSK1-92	NM_000439	exon14	c.G2219A	p.R740Q	AGCAGCCGGTCGT	.	255	109	306	1	C|1.000;T|0.000	0	0	0	0	0
CHD1	1105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	98236974	98236974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	CHD1-274	NM_001270	exon5	c.A503G	p.E168G	CTCTCTTCTTCAG	.	144	63	149	0	.	12	8	4	0	0
SLC25A46	91137	hgsc.bcm.edu	37	5	110075085	110075085	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SLC25A46-68	NM_138773	exon1	c.G265C	p.V89L	GGCAGTGTGCAGG	.	6	3	6	1	.	61	28	32	1	0
HDAC3	8841	ucsc.edu	37	5	141007714	141007714	+	Silent	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	HDAC3-227	NM_003883	exon9	c.G732T	p.V244V	GAAGTCCACTACC	.	43	5	60	0	.	42	42	0	0	0
GTF2H4	2968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30877829	30877829	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	GTF2H4-661	NM_001517	exon4	c.C363T	p.A121A	CATTGCCCTTCTG	.	133	57	243	1	.	0	0	0	0	0
VARS2	57176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30883015	30883015	+	Splice_Site	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	VARS2-26	NM_020442	exon3	c.283+1G>A	.	AGAAAGGTAAGTA	.	97	50	164	1	.	0	0	0	0	0
VARS	7407	ucsc.edu	37	6	31745374	31745374	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	VARS-93	NM_006295	exon30	c.G3792A	p.L1264L	GGATCACAGCATC	.	37	4	42	0	.	61	61	0	0	0
HLA-DQA2	3118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32714066	32714066	+	Silent	SNP	C	C	T	rs143176293		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	HLA-DQA2-90	NM_020056	exon4	c.C663T	p.C221C	GGTCTGCGCCCTG	.	154	73	217	1	C|1.000;T|0.000	2	2	0	0	0
SCUBE3	222663	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	35199528	35199528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SCUBE3-91	NM_152753	exon4	c.G361T	p.G121C	GGCAACGGCGGCT	.	39	18	105	0	.	1	1	0	0	0
CDC5L	988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	44390515	44390515	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	CDC5L-229	NM_001253	exon10	c.A1373T	p.D458V	TGGCAGACTATAG	.	162	64	205	2	.	27	12	15	0	0
RCAN2	10231	hgsc.bcm.edu	37	6	46216582	46216582	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	RCAN2-90	NM_001251973	exon3	c.C277G	p.L93V	TAAATAGCTGGAA	.	47	3	46	0	.	19	19	0	0	0
PLEKHG1	57480	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151151821	151151821	+	Missense_Mutation	SNP	C	C	T	rs138970683		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PLEKHG1-92	NM_001029884	exon16	c.C1574T	p.A525V	TTCGAGCGGGTGG	.	35	11	62	0	C|0.999;T|0.000	4	3	1	0	0
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152671451	152671451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SYNE1-607	NM_182961	exon72	c.A11753G	p.E3918G	TTCGCCTCCAGAC	.	85	23	155	0	.	12	8	4	0	0
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	157527600	157527600	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ARID1B-154	NM_020732	exon20	c.G5325A	p.K1775K	CCCAAAGGAGAAG	.	114	43	133	0	.	72	44	28	0	0
ERV3-1	2086	bcgsc.ca	37	7	64452749	64452749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	.	NM_001007253	exon2	c.C656A	p.P219Q	CCTAGCGGTGCTT	.	592	19	373	1	.	25	25	0	0	0
TMEM120A	83862	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	75617587	75617587	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	.	.	.	.	.	GTTGATGAGGATG	.	99	40	97	0	.	375	208	167	0	0
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100349824	100349824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ZAN-142	.	.	.	.	CCATCTCCATGGA	.	106	47	140	1	.	0	0	0	0	0
EPHB6	2051	broad.mit.edu	37	7	142566068	142566068	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	EPHB6-1489	NM_004445	exon14	c.G1988C	p.R663P	TTGCCCGGGAAGT	.	108	3	108	0	.	16	16	0	0	0
ANGPT2	285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	6360731	6360731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ANGPT2-91	NM_001147	exon9	c.C1382A	p.P461Q	CTCTGTGGATAGT	.	66	24	88	0	.	1	1	0	0	0
BIN3	55909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	22488017	22488017	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	.	NM_018688	exon5	c.C235T	p.L79L	TGTTCAGAAGGTC	.	165	65	289	0	.	59	37	22	0	0
FABP12	646486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	82441686	82441686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	FABP12-46	NM_001105281	exon2	c.G233A	p.G78D	TTGTGGCCACCTG	.	247	96	243	1	.	0	0	0	0	0
RIPK2	8767	broad.mit.edu	37	8	90798839	90798839	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	RIPK2-523	NM_003821	exon9	c.C1048G	p.Q350E	TCCTCTCAGCTCC	.	127	3	132	0	.	6	6	0	0	0
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	8471073	8471073	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PTPRD-912	NM_002839	exon31	c.A3426G	p.I1142M	AATTATTATGTAG	.	122	56	106	0	.	0	0	0	0	0
TOPORS	10210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	32541815	32541815	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TOPORS-230	NM_005802	exon3	c.G2708C	p.R903P	GGGGAACGTGAAG	.	184	71	240	0	.	25	13	12	0	0
VCP	7415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35061057	35061057	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	VCP-228	NM_007126	exon11	c.T1314C	p.D438D	CTCGGCATCAATG	.	252	122	409	1	.	251	128	123	0	0
TMEM2	23670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	74313090	74313090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TMEM2-92	NM_013390	exon20	c.C3408A	p.S1136R	CCTGTGGCTTTTG	.	146	54	156	0	.	30	13	17	0	0
SPATA31D1	389763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84609482	84609482	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	.	NM_001001670	exon4	c.T4097C	p.I1366T	CCAGCATATCATA	.	25	12	40	0	.	0	0	0	0	0
PAPPA	5069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	118949550	118949550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PAPPA-77	NM_002581	exon2	c.G533T	p.R178L	CAGACCGAGCCCG	.	76	29	132	0	.	28	16	12	0	0
AMER1	139285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	63411696	63411696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	.	NM_152424	exon2	c.C1471T	p.R491C	CCCTGCGGACAAG	.	25	21	77	0	.	5	0	5	0	0
OR2L8	391190	hgsc.bcm.edu	37	1	248112762	248112763	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	OR2L8-70	NM_001001963	exon1	c.603_604del	p.201_202del	.	.	64	10	72	0	.	0	0	0	0	0
RRP12	23223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	99120314	99120314	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	RRP12-92	NM_015179	exon31	c.3629delC	p.P1210fs	.	.	81	39	133	0	.	0	0	0	0	0
SCN8A	6334	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	52145329	52145329	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SCN8A-29	NM_014191	exon14	c.2322delC	p.H774fs	.	.	109	36	108	0	.	0	0	0	0	0
TMPO	7112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	98941479	98941479	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TMPO-93	NM_001032283	exon9	c.1208delA	p.E403fs	.	.	109	47	95	0	.	0	0	0	0	0
SRRM4	84530	broad.mit.edu;bcgsc.ca	37	12	119568567	119568567	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SRRM4-2	NM_194286	exon8	c.699delC	p.S233fs	GGACAGCCCTGAG	.	41	9	56	0	.	0	0	0	0	0
LENG8	114823	broad.mit.edu;bcgsc.ca	37	19	54963430	54963444	+	In_Frame_Del	DEL	GTGGCCAGTGCACAG	GTGGCCAGTGCACAG	-	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	GTGGCCAGTGCACAG	GTGGCCAGTGCACAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	LENG8-91	NM_052925	exon3	c.199_213del	p.67_71del	GGGCCTGTGGCCA	.	27	8	49	0	.	0	0	0	0	0
CDK13	8621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	40117701	40117701	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	CDK13-548	NM_003718	exon10	c.2878delT	p.L960X	.	.	139	64	78	0	.	0	0	0	0	0
RHPN1	114822	broad.mit.edu	37	8	144462787	144462787	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	RHPN1-67	NM_052924	exon11	c.1245delG	p.L415fs	CATCCTGGGGCAG	.	6	2	10	0	.	0	0	0	0	0
BMP15	9210	broad.mit.edu	37	X	50654047	50654047	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	BMP15-132	NM_005448	exon1	c.264delC	p.R88fs	GAACCGCACCATT	.	6	2	31	0	.	0	0	0	0	0
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	19448476	19448477	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	UBR4-612	NM_020765	exon67	c.9847_9848insT	p.A3283fs	.	.	75	30	105	0	.	0	0	0	0	0
PRKACG	5568	broad.mit.edu	37	9	71629038	71629039	+	Splice_Site	INS	-	-	GCGGCG	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PRKACG-1061	.	.	.	.	GGGTCTCGCGGCG	.	13	4	20	0	.	0	0	0	0	0
EP400	57634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	132522561	132522562	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	EP400		exon32	c.C6128T	p.A2079I	TCAAAGCTGAGGA	.	229.0	60.0	231.0	0.0	.	0	0	0	0	0
KIF20A	10112	ucsc.edu	37	5	137519414	137519415	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	KIF20A-90	NM_005733	exon10	c.G1178T	p.G393L	TTCAGGGGGAAGG	.	33	4	58	0	.	0	0	0	0	0
IGF2R	3482	ucsc.edu	37	6	160483635	160483636	+	Missense_Mutation	DNP	CG	CG	AA	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	CG	CG	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	IGF2R-118	NM_000876	exon26	c.G3655A	p.V1219I	TGTCCCGTTGTCA	.	52	5	82	0	.	0	0	0	0	0