Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CGN	57530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151502428	151502428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	CGN-93	NM_020770	exon12	c.G2150A	p.R717Q	GGCAGCGGCGGGC	.	208	105	186	0	.	1	0	1	0	0
SHE	126669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154471704	154471704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	SHE-95	NM_001010846	exon2	c.T602C	p.L201S	TCTTCTAAAATGA	.	133	39	128	0	.	0	0	0	0	0
OR10J5	127385	broad.mit.edu	37	1	159505502	159505502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	OR10J5-71	NM_001004469	exon1	c.C296T	p.T99I	ATTTGTGTAGCAC	.	232	7	220	1	.	0	0	0	0	0
IGFN1	91156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201166405	201166405	+	Silent	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	IGFN1-71	NM_001164586	exon5	c.C327T	p.Y109Y	TGCGTACGGAGAG	.	130	41	88	0	.	35	10	25	0	0
CR1	1378	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	207669654	207669654	+	Silent	SNP	G	G	C	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	CR1-93	NM_000573	exon1	c.G42C	p.P14P	CGGGCCGCCGGCG	.	48	6	39	0	.	0	0	0	0	0
PROX1	5629	broad.mit.edu;bcgsc.ca	37	1	214170147	214170147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	PROX1-654	NM_001270616	exon2	c.C269A	p.A90E	CAGGAGCAACCAT	.	162	8	156	1	.	0	0	0	0	0
FMN2	56776	hgsc.bcm.edu	37	1	240255571	240255571	+	Silent	SNP	C	C	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	FMN2-145	NM_020066	exon1	c.C162G	p.G54G	AGGGGGCGGCGGC	.	9	4	5	0	.	0	0	0	0	0
FH	2271	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	241661272	241661272	+	Splice_Site	SNP	T	T	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	FH-416	NM_000143	exon11	c.1391-2A>C	.	ATACCCTGAAGAA	.	121	32	125	0	.	9	2	7	0	0
ITGA8	8516	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	15688856	15688856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ITGA8-230	NM_003638	exon12	c.A1196G	p.D399G	TATCCATCTTGGT	.	101	7	99	0	.	0	0	0	0	0
TRPM5	29850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	2432685	2432685	+	Silent	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	TRPM5-137	NM_014555	exon18	c.G2679A	p.A893A	CAGCAGCGCCTGG	.	88	27	70	0	.	0	0	0	0	0
MAML2	84441	hgsc.bcm.edu	37	11	95825362	95825362	+	Silent	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	MAML2-850	NM_032427	exon2	c.G1833A	p.Q611Q	TTGCTGCTGCTGC	.	238	12	232	0	.	56	56	0	0	0
MAML2	84441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	95825407	95825407	+	Silent	SNP	C	C	T	rs61901862		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	MAML2-850	NM_032427	exon2	c.G1788A	p.Q596Q	CTGCTGCTGCTGC	.	274	55	246	0	C|0.250;T|0.750	427	413	14	0	0
TRPC6	7225	ucsc.edu	37	11	101340201	101340201	+	Missense_Mutation	SNP	C	C	T	rs138519687		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	TRPC6-93	NM_004621	exon10	c.G2441A	p.G814E	TGACTTCCTAAAA	.	42	4	50	0	.	0	0	0	0	0
OR8G5	219865	bcgsc.ca	37	11	124135723	124135723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	.	NM_001005198	exon1	c.T1001C	p.V334A	TCCACGTTGCCCT	.	254	16	247	2	.	0	0	0	0	0
ACAD8	27034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	134131026	134131026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ACAD8-90	NM_014384	exon7	c.G794A	p.G265D	GGCAGGGCTTCCT	.	170	74	175	0	.	21	11	10	0	0
MYO1A	4640	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57440666	57440666	+	Silent	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	MYO1A-231	NM_005379	exon7	c.C522T	p.L174L	ACCACCGAGGGGG	.	188	15	168	0	.	0	0	0	0	0
FREM2	341640	broad.mit.edu;bcgsc.ca	37	13	39438496	39438496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	FREM2-100	NM_207361	exon16	c.A7736G	p.K2579R	ACCACAAGTGCTC	.	129	11	199	1	.	0	0	0	0	0
CFL2	1073	hgsc.bcm.edu	37	14	35182529	35182529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	CFL2-289	NM_021914	exon2	c.G242A	p.R81Q	GCATATCGGCAAT	.	94	5	131	0	.	7	7	0	0	0
PRC1	9055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	91517424	91517424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	PRC1-92	NM_199413	exon11	c.C1403A	p.P468H	GTTCGAGGAGCGC	.	249	21	274	0	.	29	22	7	0	0
DCUN1D3	123879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20871250	20871250	+	Silent	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	DCUN1D3-92	NM_173475	exon3	c.C873T	p.L291L	TGAGCTGAGTGCA	.	212	91	170	0	.	6	4	2	0	0
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	61687954	61687954	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	CDH8-161	NM_001796	exon12	c.T1958G	p.I653S	TTGATAATTAATG	.	177	54	145	0	.	0	0	0	0	0
RPL13	6137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	89627425	89627425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	RPL13-90	NM_001243131	exon2	c.C58T	p.R20W	TGGCAGCGGCGCG	.	86	41	48	0	.	617	298	316	1	2
SPAG7	9552	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4871031	4871031	+	Silent	SNP	A	A	C	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	SPAG7-91	NM_004890	exon1	c.T69G	p.T23T	GCGCCGAGTCTCC	.	76	20	63	1	.	47	24	23	0	0
SLC52A1	55065	hgsc.bcm.edu;bcgsc.ca	37	17	4937586	4937586	+	Silent	SNP	G	G	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	.	NM_017986	exon3	c.C198A	p.T66T	CCACAGGGTCACC	.	79	4	36	0	.	0	0	0	0	0
ITGA3	3675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48148253	48148253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ITGA3-229	NM_005501	exon5	c.A710G	p.Y237C	CTGAGTATAGTTA	.	237	94	236	0	.	403	198	205	0	0
ABCA6	23460	broad.mit.edu;bcgsc.ca	37	17	67081770	67081770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ABCA6-159	NM_080284	exon31	c.G4025A	p.G1342E	ACCTCTCCAGCAG	.	335	15	262	1	.	0	0	0	0	0
ASXL3	80816	broad.mit.edu;ucsc.edu	37	18	31224902	31224902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ASXL3-49	NM_030632	exon3	c.A182G	p.N61S	ACACTAACACTCG	.	47	5	81	1	.	0	0	0	0	0
TCEB3B	51224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	44560193	44560193	+	Silent	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	TCEB3B-156	NM_016427	exon1	c.C1443T	p.D481D	CATGGAGTCAGAA	.	153	63	197	0	.	0	0	0	0	0
ZNF799	90576	ucsc.edu	37	19	12501560	12501560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ZNF799-74	NM_001080821	exon4	c.A1652G	p.E551G	ATTCTTTCATGTC	.	201	1	171	3	.	10	6	4	0	0
ZNF709	163051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12574997	12574997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ZNF709-90	NM_152601	exon4	c.G1739A	p.R580K	TGAGTCCTTTCAT	.	199	57	176	0	.	0	0	0	0	0
CILP2	148113	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19654855	19654855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	CILP2-91	NM_153221	exon8	c.G1501A	p.G501S	CCCATCGGCTTCA	.	86	32	76	1	.	0	0	0	0	0
FPR3	2359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52327625	52327625	+	Silent	SNP	T	T	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	FPR3-501	NM_002030	exon2	c.T624A	p.I208I	CATTATTGGCTTC	.	155	67	242	0	.	0	0	0	0	0
LRRTM4	80059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	77746638	77746638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	LRRTM4-94	NM_024993	exon3	c.C357A	p.N119K	AATTTTGTTGGAG	.	100	27	109	0	.	0	0	0	0	0
MAP3K19	80122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	135738691	135738691	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	.	NM_025052	exon9	c.G3620C	p.C1207S	CTGGCACAGCCAA	.	80	24	66	0	.	0	0	0	0	0
KIAA1755	85449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	36870194	36870194	+	Silent	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	KIAA1755-95	NM_001029864	exon3	c.G339A	p.E113E	CTGCTCCTCCTGG	.	184	36	129	0	.	1	1	0	0	0
RBM11	54033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	15599303	15599303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	.	NM_144770	exon5	c.G535T	p.D179Y	GTTCCAGATCTTG	.	364	149	371	1	.	11	9	2	0	0
SEPT5-GP1BB	0	ucsc.edu	37	22	19710008	19710008	+	RNA	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	.	.	.	.	.	CAGTGACGCTCGC	.	48	4	45	0	.	4	4	0	0	0
ATXN7	6314	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	63981359	63981359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ATXN7-90	NM_000333	exon12	c.C1861T	p.H621Y	CCAGCTCATGGAA	.	373	107	343	1	.	7	5	2	0	0
TRIO	7204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	14497115	14497115	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	TRIO-562	NM_007118	exon50	c.G8008C	p.V2670L	AACAAGGTATCTG	.	154	43	169	0	.	0	0	0	0	0
RICTOR	253260	broad.mit.edu	37	5	38947463	38947463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	RICTOR-849	NM_152756	exon32	c.C4217T	p.S1406F	GAGGAAGATCGTT	.	257	6	247	0	.	4	4	0	0	0
HCP5	10866	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31431638	31431638	+	RNA	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	HCP5-68	.	.	.	.	TGGGTTCCACACG	.	63	28	49	0	.	8	8	0	0	0
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	32037362	32037362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	TNXB-90	NM_019105	exon15	c.G5555A	p.R1852H	CCCACACGCTTGC	.	127	8	99	0	.	3	3	0	0	0
EYA4	2070	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	133849920	133849920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	EYA4-578	NM_172105	exon20	c.G1897T	p.A633S	CACCAAGCACTGG	.	291	15	277	0	.	3	3	0	0	0
PMS2P3	5387	broad.mit.edu;bcgsc.ca	37	7	75145521	75145521	+	RNA	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	PMS2P3-131	.	.	.	.	TCCACAGCCACAT	.	603	216	501	0	.	33	32	1	0	0
CCDC132	55610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92932815	92932815	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	CCDC132-90	NM_017667	exon17	c.T1405G	p.W469G	GAGACTTGGGAAC	.	42	16	38	0	.	8	6	2	0	0
FLNC	2318	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	128482660	128482660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	FLNC-141	NM_001127487	exon15	c.G2297A	p.R766Q	CCGAGCGGGTAAA	.	144	16	112	1	.	0	0	0	0	0
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	29037680	29037680	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	KIF13B-22	NM_015254	exon8	c.C661T	p.R221X	GGGATCGGCTACT	.	380	150	319	0	.	3	3	0	0	0
WWP1	11059	broad.mit.edu;bcgsc.ca	37	8	87443954	87443954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	WWP1-659	NM_007013	exon14	c.G1583A	p.R528H	ATCCTCGCAATGG	.	149	6	166	0	.	28	26	2	0	0
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133829702	133829702	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	PHF20L1-92	NM_016018	exon12	c.T1491G	p.C497W	TGAATGTCCCAGG	.	74	9	45	0	.	9	8	1	0	0
SPATA31D1	389763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84608041	84608041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	.	NM_001001670	exon4	c.G2656A	p.V886I	CACTGCGTTGATA	.	201	96	290	0	.	0	0	0	0	0
DIRAS2	54769	ucsc.edu;bcgsc.ca	37	9	93375537	93375537	+	Silent	SNP	C	C	T	rs201919906		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	DIRAS2-659	NM_017594	exon2	c.G573A	p.K191K	TTTGAGCTTCTCT	.	295	115	405	3	C|0.999;T|0.000	0	0	0	0	0
GRIPAP1	56850	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	48840222	48840222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	GRIPAP1-227	NM_020137	exon15	c.G1237A	p.E413K	ACTGCTCCTTCTC	.	245	17	232	0	.	27	27	0	0	0
PCDH11X	27328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	91133625	91133625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	PCDH11X-193	NM_001168363	exon2	c.C2386A	p.P796T	GTGACCCCAAATA	.	497	213	691	1	.	0	0	0	0	0
LAMP2	3920	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	119581842	119581842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	LAMP2-131	NM_013995	exon5	c.C595T	p.P199S	TGGTGGGTGCCAC	.	125	9	132	0	.	100	100	0	0	0
ATP1B1	481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	169094224	169094232	+	In_Frame_Del	DEL	AAAAGTACA	AAAAGTACA	-	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	AAAAGTACA	AAAAGTACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ATP1B1-540	NM_001677	exon3	c.329_337del	p.110_113del	.	.	133	29	148	0	.	0	0	0	0	0
RBM45	129831	broad.mit.edu	37	2	178988920	178988920	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	RBM45-22	NM_152945	exon8	c.1135delA	p.K379fs	TCATGCAAAAAAA	.	134	8	102	0	.	0	0	0	0	0
ATP2A1	487	hgsc.bcm.edu;bcgsc.ca	37	16	28913639	28913640	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ATP2A1-93	NM_004320	exon17	c.2456_2457insC	p.R819fs	.	.	116	32	113	0	.	0	0	0	0	0
CSMD1	64478	broad.mit.edu	37	8	2808726	2808727	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	CSMD1-86	NM_033225	exon66	c.10111_10112insC	p.A3371fs	GAGTGGCGGGTTG	.	151	9	155	0	.	0	0	0	0	0