Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 PRAMEF2 65122 hgsc.bcm.edu 37 1 12919095 12919095 + Silent SNP A A C rs116865587 byfrequency;alternate_allele TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . PRAMEF2-68 NM_023014 exon2 c.A231C p.P77P GGAGCCATTGAAA . 39 2 153 1 A|0.974;G|0.026 0 0 0 0 0 HFM1 164045 hgsc.bcm.edu 37 1 91844675 91844675 + Missense_Mutation SNP G G C novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . HFM1-112 NM_001017975 exon9 c.C1103G p.T368R ATTACTGTATCTC . 28 2 43 0 . 0 0 0 0 0 EVI5 7813 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 93160869 93160869 + Missense_Mutation SNP C C G novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . EVI5-136 NM_005665 exon7 c.G1039C p.E347Q TTACCTCAGACAT . 66 7 135 0 . 0 0 0 0 0 ASH1L 55870 broad.mit.edu 37 1 155451419 155451419 + Silent SNP T T C novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . ASH1L-234 NM_018489 exon3 c.A1242G p.A414A CAGACCTGCCAAA . 145 3 154 0 . 8 8 0 0 0 OR6Y1 391112 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 158517503 158517503 + Silent SNP A A T novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . OR6Y1-69 NM_001005189 exon1 c.T393A p.I131I ATTACAAATGGCT . 104 8 100 0 . 0 0 0 0 0 NUAK2 81788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 205274389 205274389 + Missense_Mutation SNP T T C novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . NUAK2-391 NM_030952 exon6 c.A761G p.D254G TTATGGTCATGCC . 69 17 87 0 . 61 32 29 0 0 USH2A 7399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 216138718 216138718 + Missense_Mutation SNP C C T rs201386640 TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . USH2A-115 NM_206933 exon37 c.G7061A p.R2354H TTAGGGCGAAAAG . 166 54 200 0 C|0.999;T|0.000 0 0 0 0 0 SDE2 163859 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 226180666 226180666 + Missense_Mutation SNP A A C novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . . NM_152608 exon3 c.T276G p.I92M CTTCTCAATCTGA . 69 25 89 0 . 15 9 6 0 0 FH 2271 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 241663812 241663812 + Nonsense_Mutation SNP G G A novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . FH-416 NM_000143 exon9 c.C1315T p.Q439X TGGCCTGGATTCC . 218 91 195 0 . 49 42 7 0 0 C11orf80 79703 hgsc.bcm.edu;broad.mit.edu 37 11 66555634 66555634 + Missense_Mutation SNP T T C novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . . NM_024650 exon5 c.T527C p.I176T CAGAAATACAGTC . 47 3 73 0 . 0 0 0 0 0 GLB1L2 89944 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 134241359 134241359 + Silent SNP A A G novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . GLB1L2-25 NM_138342 exon14 c.A1401G p.T467T CAAGACAACGAAG . 210 79 216 0 . 59 31 28 0 0 IPO8 10526 hgsc.bcm.edu;broad.mit.edu 37 12 30787080 30787080 + Missense_Mutation SNP T T C novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . IPO8-227 NM_006390 exon23 c.A2836G p.S946G GAGTACTGAACCC . 66 5 72 0 . 58 53 5 0 0 ULK1 8408 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 132395297 132395297 + Silent SNP C C T novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . ULK1-758 NM_003565 exon12 c.C900T p.S300S GGGGTCCGGCAGC . 81 31 95 0 . 22 12 10 0 0 DOCK9 23348 hgsc.bcm.edu 37 13 99536093 99536093 + Missense_Mutation SNP G G C novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . DOCK9-90 NM_001130049 exon22 c.C2446G p.H816D CCAGATGAGTGGA . 7 2 35 0 . 18 18 0 0 0 JKAMP 51528 hgsc.bcm.edu 37 14 59965598 59965598 + Silent SNP G G C novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . JKAMP-67 NM_016475 exon5 c.G612C p.V204V AACCGTGCTTCAG . 36 2 26 0 . 51 51 0 0 0 SNURF 8926 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 25207297 25207297 + Silent SNP C C T novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . SNURF-90 NM_005678 exon2 c.C51T p.H17H ACAGCACGTACCA . 74 5 129 0 . 35 35 0 0 0 UACA 55075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 70987423 70987423 + Silent SNP C C T novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . UACA-94 NM_018003 exon3 c.G234A p.K78K ATTCCCCTTTGAG . 27 18 44 0 . 26 13 13 0 0 HCN4 10021 hgsc.bcm.edu 37 15 73660576 73660576 + Silent SNP G G C rs201193660 TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . HCN4-96 NM_005477 exon1 c.C36G p.L12L GCTGTAGAGCCGC . 3 2 4 1 G|0.989;C|0.011 0 0 0 0 0 KIAA0753 9851 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 6531560 6531560 + Nonsense_Mutation SNP G G A novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . KIAA0753-90 NM_014804 exon3 c.C595T p.Q199X GAGGCTGAAGTCC . 157 9 179 0 . 20 18 2 0 0 TRPV2 51393 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 16340169 16340169 + Missense_Mutation SNP A A G novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . TRPV2-91 NM_016113 exon15 c.A2261G p.N754S AGGAAAACTATGT . 145 58 156 0 . 4 4 0 0 0 TTC25 83538 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 40101470 40101470 + Missense_Mutation SNP T T C novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . TTC25-23 . . . . AAGCCATTGACAC . 23 13 38 0 . 0 0 0 0 0 MYCBPAP 84073 ucsc.edu 37 17 48608775 48608775 + Missense_Mutation SNP C C T novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . MYCBPAP-230 NM_032133 exon19 c.C2941T p.R981C GCTTTGCGCCTCT . 31 4 24 0 . 0 0 0 0 0 ENPP7 339221 broad.mit.edu 37 17 77710872 77710872 + Silent SNP C C T novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . ENPP7-92 NM_178543 exon4 c.C1059T p.H353H GGAGCACGGCTTT . 94 5 119 0 . 0 0 0 0 0 SYT4 6860 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 40853736 40853736 + Missense_Mutation SNP C C G novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . SYT4-132 NM_020783 exon2 c.G658C p.D220H TCTCATCAAAAGC . 68 30 147 0 . 1 1 0 0 0 SERPINB10 5273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 61585305 61585305 + Missense_Mutation SNP T T A novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . SERPINB10-227 NM_005024 exon3 c.T341A p.I114K ATGCGATATATGG . 44 6 83 0 . 0 0 0 0 0 ZSWIM4 65249 broad.mit.edu 37 19 13941242 13941242 + Missense_Mutation SNP C C T novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . ZSWIM4-90 NM_023072 exon13 c.C2348T p.S783L ACCACTCGGCCTT . 168 7 200 0 . 12 12 0 0 0 KXD1 79036 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 18679377 18679377 + Missense_Mutation SNP A A T novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . . NM_001171948 exon6 c.A467T p.Q156L ATGTCCAGCCTGG . 141 9 151 0 . 69 69 0 0 0 NKPD1 284353 broad.mit.edu 37 19 45656458 45656458 + Missense_Mutation SNP G G A novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . NKPD1-68 NM_198478 exon4 c.C1237T p.R413W CCAGCCGCTCGAT . 5 4 13 0 . 0 0 0 0 0 MYBPC2 4606 broad.mit.edu 37 19 50939282 50939282 + Silent SNP G G T novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . MYBPC2-67 NM_004533 exon4 c.G210T p.V70V CGCAGTGGTCGTG . 12 6 17 0 . 0 0 0 0 0 BIRC6 57448 hgsc.bcm.edu 37 2 32639897 32639897 + Missense_Mutation SNP T T C novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . BIRC6-233 NM_016252 exon10 c.T1538C p.L513P GCATTCTCCAACA . 56 3 66 0 . 13 13 0 0 0 EIF2AK3 9451 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 88890366 88890366 + Silent SNP C C T novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . EIF2AK3-361 NM_004836 exon5 c.G972A p.K324K TCCCTTCTTACTG . 170 11 191 1 . 23 21 2 0 0 SCN2A 6326 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 166201262 166201262 + Silent SNP C C G novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . SCN2A-142 NM_001040143 exon15 c.C2760G p.L920L TGAACTCCCACGC . 182 26 199 0 . 5 3 2 0 0 XIRP2 129446 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 168105759 168105759 + Silent SNP G G A novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . XIRP2-104 NM_152381 exon9 c.G7857A p.R2619R TGCTCGGATACTA . 147 41 134 0 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 179598482 179598482 + Nonsense_Mutation SNP C C A novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . TTN-636 NM_001267550 exon53 c.G15634T p.G5212X TTTTTCCGTCTTC . 197 14 251 1 . 0 0 0 0 0 SESTD1 91404 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 179986590 179986590 + Missense_Mutation SNP G G A novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . SESTD1-228 NM_178123 exon13 c.C1349T p.S450F GCCCAGGATGCCT . 84 26 76 0 . 33 17 16 0 0 ICA1L 130026 broad.mit.edu 37 2 203693626 203693626 + Missense_Mutation SNP T T G novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . ICA1L-90 NM_178231 exon4 c.A107C p.K36T TCTTTTTTTCCTG . 161 4 153 0 . 4 4 0 0 0 ABCB6 10058 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 220074990 220074990 + Silent SNP G G A novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . ABCB6-153 NM_005689 exon18 c.C2382T p.I794I GACGAGGATCTGG . 126 8 129 0 . 63 62 1 0 0 LSS 4047 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 47615617 47615617 + Missense_Mutation SNP G G A novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . LSS-90 NM_001001438 exon19 c.C1790T p.A597V ATACAGGCGAAGG . 67 51 118 0 . 14 1 13 0 0 PRMT2 3275 bcgsc.ca 37 21 48083430 48083430 + Nonsense_Mutation SNP G G A novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . PRMT2-91 NM_206962 exon11 c.G1233A p.W411X GAGCTGGGCTGTC . 49 4 89 0 . 88 88 0 0 0 APOL3 80833 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 22 36556768 36556768 + Missense_Mutation SNP G G T rs11089781 byfrequency;alternate_allele TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . APOL3-90 NM_145640 exon1 c.C172A p.Q58K TGAGCTGTGTGGA . 75 11 144 0 G|0.932;A|0.068 87 87 0 0 0 CNOT10 25904 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 32766999 32766999 + Missense_Mutation SNP G G A novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . CNOT10-91 NM_001256742 exon9 c.G1100A p.S367N CCATGAGCAAGCA . 133 8 177 0 . 24 19 5 0 0 RAD54L2 23132 hgsc.bcm.edu;bcgsc.ca 37 3 51664392 51664392 + Missense_Mutation SNP A A G novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . RAD54L2-93 NM_015106 exon5 c.A586G p.S196G GAAAAAAGCAGTC . 79 4 105 1 . 0 0 0 0 0 CHIC2 26511 hgsc.bcm.edu 37 4 54876297 54876297 + Missense_Mutation SNP A A C novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . CHIC2-1082 NM_012110 exon6 c.T463G p.F155V GTAAAAATTCTAT . 24 2 58 0 . 9 9 0 0 0 FHDC1 85462 bcgsc.ca 37 4 153886112 153886112 + Missense_Mutation SNP T T C novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 T T - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . FHDC1-136 NM_033393 exon8 c.T1085C p.V362A ATCATGTTCAGAA . 101 4 155 0 . 5 5 0 0 0 TAS2R1 50834 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 9629374 9629374 + Silent SNP G G A novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . TAS2R1-93 NM_019599 exon1 c.C771T p.F257F AAAGATGAACCTT . 85 7 103 0 . 0 0 0 0 0 HCN1 348980 ucsc.edu 37 5 45461992 45461992 + Nonsense_Mutation SNP G G A novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . HCN1-91 NM_021072 exon3 c.C967T p.Q323X AGTCCTGCAGTAG . 41 4 60 0 . 0 0 0 0 0 SHROOM1 134549 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 132161119 132161119 + Silent SNP C C T novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . SHROOM1-91 NM_133456 exon1 c.G714A p.P238P CCGCGCCGGCCCA . 11 8 25 0 . 1 1 0 0 0 PCDHGA2 56113 broad.mit.edu 37 5 140720783 140720783 + Missense_Mutation SNP T T G novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . PCDHGA2-71 NM_018915 exon1 c.T2245G p.F749V CGGGCTTTCCTGC . 149 3 211 0 . 2 2 0 0 0 RUNX2 860 hgsc.bcm.edu 37 6 45390482 45390482 + Missense_Mutation SNP C C G novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . RUNX2-417 NM_001024630 exon3 c.C211G p.Q71E CAGCAGCAGGAGG . 28 3 25 0 . 0 0 0 0 0 MTHFD1L 25902 hgsc.bcm.edu 37 6 151358132 151358132 + Missense_Mutation SNP A A G novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . MTHFD1L-292 NM_001242767 exon26 c.A2729G p.K910R TGGCAAAGACCCA . 87 6 116 0 . 71 71 0 0 0 EPHB6 2051 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 142561393 142561393 + Silent SNP A A T novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . EPHB6-1489 NM_004445 exon6 c.A105T p.V35V AGAGGTATTGCTG . 86 37 100 1 . 0 0 0 0 0 COL22A1 169044 broad.mit.edu 37 8 139767734 139767734 + Silent SNP T T C novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . COL22A1-103 NM_152888 exon20 c.A1968G p.K656K TTCCCCTTTCAAG . 268 4 299 0 . 0 0 0 0 0 KANK1 23189 broad.mit.edu;bcgsc.ca 37 9 732477 732477 + Silent SNP G G A novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . KANK1-517 NM_001256876 exon10 c.G3105A p.E1035E AGAAGAGGAGGAG . 130 5 176 1 . 51 51 0 0 0 KIAA1984 84960 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 139694856 139694856 + Missense_Mutation SNP G G A novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . KIAA1984-91 NM_001039374 exon5 c.G454A p.E152K CAGCTGGAGAACA . 17 6 20 0 . 3 3 0 0 0 ATP2B3 492 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 152823737 152823737 + Silent SNP C C T novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . ATP2B3-109 NM_001001344 exon15 c.C2601T p.A867A CGTGGCCTTCACA . 133 8 208 0 . 0 0 0 0 0 KLHL35 283212 broad.mit.edu 37 11 75140917 75140917 + Frame_Shift_Del DEL A A - novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . . NM_001039548 exon1 c.758delT p.L253fs TTCTCCAGGAAGT . 6 2 3 0 . 0 0 0 0 0 PUS3 83480 broad.mit.edu 37 11 125766029 125766029 + Frame_Shift_Del DEL T T - novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . PUS3-91 NM_031307 exon2 c.151delA p.T51fs GCTTAGTTTTTCC . 238 18 249 0 . 0 0 0 0 0 KANSL2 54934 broad.mit.edu 37 12 49062988 49062988 + Frame_Shift_Del DEL T T - novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . . NM_017822 exon6 c.777delA p.K259fs CAGACATTTTAAT . 6 2 6 0 . 0 0 0 0 0 B2M 567 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 45003781 45003782 + Frame_Shift_Del DEL CT CT - novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 CT CT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . B2M-93 NM_004048 exon1 c.37_38del p.13_13del . . 58 10 104 0 . 0 0 0 0 0 STARD3 10948 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 37809843 37809854 + In_Frame_Del DEL CCTCCCTGGGCT CCTCCCTGGGCT - novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 CCTCCCTGGGCT CCTCCCTGGGCT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . STARD3-90 NM_006804 exon2 c.59_70del p.20_24del . . 60 20 76 0 . 0 0 0 0 0 TAF1B 9014 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 10059757 10059763 + Frame_Shift_Del DEL GCACACT GCACACT - novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 GCACACT GCACACT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . TAF1B-92 NM_005680 exon14 c.1373_1379del p.458_460del . . 101 17 123 0 . 0 0 0 0 0 TCFL5 10732 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 61490803 61490806 + Frame_Shift_Del DEL AGAA AGAA - novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 AGAA AGAA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . TCFL5-581 NM_006602 exon3 c.904_907del p.302_303del . . 210 74 228 0 . 0 0 0 0 0 NF2 4771 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 30061052 30061052 + Frame_Shift_Del DEL T T - novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . NF2-4696 NM_000268 exon9 c.884delT p.L295fs . . 24 18 28 0 . 0 0 0 0 0 CACNG2 10369 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 37098492 37098492 + Frame_Shift_Del DEL T T - novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . CACNG2-90 NM_006078 exon1 c.130delA p.S44fs . . 174 120 266 0 . 0 0 0 0 0 B2M 567 broad.mit.edu 37 15 45007645 45007646 + Frame_Shift_Ins INS - - A novel TCGA-GL-7966-01A-11D-2201-08 TCGA-GL-7966-10A-01D-2201-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 458fa5d9-d07d-4869-8e72-52b7318d7810 b720a727-863a-4225-99b2-bb5cd03e11bd . B2M-93 NM_004048 exon2 c.92_93insA p.S31fs TTTACTCACGTCA . 116 8 197 0 . 0 0 0 0 0