Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
MTOR	2475	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11270889	11270889	+	Silent	SNP	G	G	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MTOR-1439	NM_004958	exon24	c.C3636T	p.L1212L	GCAGATGAGCACA	.	64	8	70	0	.	8	3	5	0	0
MTF1	4520	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38288352	38288352	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MTF1-92	NM_005955	exon9	c.C1208A	p.S403X	CTGACTGACTCTG	.	42	8	43	0	.	1	1	0	0	0
RIMS3	9783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	41107442	41107442	+	Silent	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	RIMS3-90	NM_014747	exon3	c.G156A	p.K52K	CACCATCTTGGCA	.	88	18	60	0	.	1	0	1	0	0
MCL1	4170	broad.mit.edu	37	1	150551617	150551617	+	Silent	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MCL1-227	NM_021960	exon1	c.G390A	p.E130E	CTCCGGCTCGTAC	.	18	3	20	0	.	17	10	7	0	0
PSMB4	5692	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151372469	151372469	+	Silent	SNP	G	G	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	PSMB4-92	NM_002796	exon2	c.G153A	p.V51V	CATGGTGACCGGG	.	65	7	113	0	.	0	0	0	0	0
SLC25A44	9673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156169658	156169658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	SLC25A44-91	NM_014655	exon2	c.T20C	p.I7T	GCAACATCCAGAT	.	123	16	179	0	.	11	6	5	0	0
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	186024754	186024754	+	Silent	SNP	T	T	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	HMCN1-113	NM_031935	exon45	c.T7092A	p.V2364V	GTGTGTTGCTGTG	.	258	43	331	0	.	0	0	0	0	0
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	215820886	215820886	+	Silent	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	USH2A-115	NM_206933	exon67	c.C14769A	p.I4923I	GAAACTGATCCAC	.	165	25	196	0	.	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228462497	228462497	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	OBSCN-403	NM_001271223	exon24	c.G7033C	p.V2345L	ATCACCGTGGAGG	.	104	18	47	0	.	0	0	0	0	0
FAM208B	54906	hgsc.bcm.edu;broad.mit.edu	37	10	5781661	5781661	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	.	NM_017782	exon13	c.C1528T	p.Q510X	AGTGTTCAACCAG	.	112	6	134	0	.	1	1	0	0	0
EPC1	80314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	32573863	32573863	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	EPC1-93	NM_025209	exon10	c.A1507T	p.T503S	TATTTGTTTCTGA	.	119	21	140	0	.	5	1	4	0	0
MBL2	4153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	54527970	54527970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MBL2-91	NM_000242	exon4	c.T674C	p.L225P	TTCAGTAGCAATA	.	219	39	263	0	.	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1092953	1092953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MUC2-90	NM_002457	exon30	c.C4772T	p.T1591M	CCACTACGGTGAC	.	101	8	73	0	.	0	0	0	0	0
CCDC86	79080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	60609627	60609627	+	Silent	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	CCDC86-90	NM_024098	exon1	c.G30T	p.R10R	CCGACGGCTGGGA	.	98	18	71	0	.	28	13	15	0	0
FERMT3	83706	broad.mit.edu	37	11	63978789	63978789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	FERMT3-23	NM_031471	exon5	c.C557T	p.S186L	ACTTCTCGGACAG	.	58	4	15	0	.	21	21	0	0	0
PANX1	24145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	93911576	93911576	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	PANX1-68	NM_015368	exon3	c.C363G	p.Y121X	CCTGTACCTGCCC	.	184	41	191	0	.	3	2	1	0	0
LPCAT3	10162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7125633	7125633	+	Silent	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	LPCAT3-91	NM_005768	exon1	c.G96A	p.A32A	GGACGTCGCCAAC	.	143	39	122	0	.	153	67	86	0	0
SCN8A	6334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52188171	52188171	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	SCN8A-29	NM_014191	exon26	c.T4541A	p.I1514N	AAGGAATCGTCTT	.	72	25	82	0	.	0	0	0	0	0
KRT84	3890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52779218	52779218	+	Missense_Mutation	SNP	C	C	G	rs148258545	alternate_allele	TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	KRT84-91	NM_033045	exon1	c.G152C	p.G51A	CGACTACCAAAGC	.	164	35	166	0	C|1.000;T|0.000	0	0	0	0	0
C12orf29	91298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	88442035	88442035	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	C12orf29-90	NM_001009894	exon7	c.T814A	p.C272S	GGCTTATGCTGGC	.	141	41	91	0	.	2	1	1	0	0
RPH3A	22895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	113333603	113333603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	RPH3A-519	NM_001143854	exon21	c.C1879A	p.H627N	ATCAAACACAGTG	.	101	11	96	0	.	0	0	0	0	0
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	39262352	39262352	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	FREM2-100	NM_207361	exon1	c.G871C	p.A291P	CGAGGGGCTCCTG	.	107	22	116	0	.	1	0	1	0	0
PLEKHH1	57475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68038953	68038953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	PLEKHH1-22	NM_020715	exon11	c.C1687A	p.R563S	CTGCAGCGCACCT	.	37	10	29	0	.	0	0	0	0	0
EML5	161436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	89105224	89105224	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	EML5-93	NM_183387	exon31	c.A4265C	p.N1422T	TCATCATTATGTT	.	72	12	50	0	.	0	0	0	0	0
WDR20	91833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102689211	102689211	+	Silent	SNP	T	T	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	WDR20-90	NM_181291	exon4	c.T1737A	p.T579T	TGGAACTGTAGTG	.	232	42	221	0	.	4	0	4	0	0
EIF2AK4	440275	ucsc.edu	37	15	40284411	40284411	+	Silent	SNP	G	G	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	EIF2AK4-757	NM_001013703	exon17	c.G2667A	p.L889L	AGACTTGATTAAG	.	46	4	48	0	.	6	6	0	0	0
BAHD1	22893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40751142	40751142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	BAHD1-90	NM_014952	exon2	c.C479A	p.A160D	ATCGTGCTACTGG	.	44	10	26	0	.	13	10	3	0	0
UBR1	197131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43378432	43378432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	UBR1-91	NM_174916	exon2	c.G88A	p.D30N	GCTGATCCCACCA	.	30	6	37	0	.	0	0	0	0	0
C15orf60	283677	broad.mit.edu	37	15	73735652	73735652	+	Silent	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	C15orf60-46	NM_001042367	exon1	c.G126T	p.L42L	ATGCCTGGAAGCT	.	43	6	39	2	.	0	0	0	0	0
MMP25	64386	hgsc.bcm.edu	37	16	3100091	3100091	+	Missense_Mutation	SNP	G	G	A	rs146181243		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MMP25-226	NM_022468	exon3	c.G314A	p.R105H	GGCGGCGTCGCCG	.	22	9	0	0	G|1.000;A|0.000	0	0	0	0	0
COG8	84342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	69368509	69368509	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	COG8-91	NM_032382	exon3	c.T1328A	p.L443Q	GCAACCAGAATAT	.	153	27	167	0	.	24	16	8	0	0
ZNF469	84627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	88497561	88497561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	.	NM_001127464	exon2	c.C3599T	p.P1200L	AGGAGCCTGAAAC	.	108	28	78	0	.	0	0	0	0	0
SLC52A1	55065	ucsc.edu;bcgsc.ca	37	17	4937403	4937403	+	Silent	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	.	NM_017986	exon3	c.C381A	p.T127T	ATTAGAGGTACAA	.	158	46	111	2	.	3	2	1	0	0
CHRNB1	1140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7350850	7350850	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	CHRNB1-92	NM_000747	exon6	c.A491T	p.N164I	GGCAGAATTGCAC	.	166	21	171	0	.	6	2	4	0	0
SLC35G6	643664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7386013	7386013	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	.	NM_001102614	exon2	c.G710C	p.G237A	TGCCAGGCCTCTT	.	183	25	158	0	.	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	420	30	349	16	.	32	4	28	0	0
UTP6	55813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	30219812	30219812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	UTP6-91	NM_018428	exon5	c.A314G	p.D105G	ACATCGTCCTGCA	.	76	10	76	0	.	0	0	0	0	0
SLC25A19	60386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73273550	73273550	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	SLC25A19-91	NM_001126122	exon6	c.C658G	p.L220V	AAAGCAGGTTTTG	.	105	27	104	0	.	22	16	6	0	0
PIGN	23556	bcgsc.ca	37	18	59807700	59807700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	PIGN-227	NM_176787	exon12	c.C976T	p.P326S	TCAATGGTGCAAT	.	99	6	97	0	.	0	0	0	0	0
CC2D1A	54862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14028999	14028999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	CC2D1A-90	NM_017721	exon7	c.G865T	p.V289L	TTCCGCGTGGCTA	.	156	32	67	0	.	0	0	0	0	0
GRAMD1A	57655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35505160	35505160	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	GRAMD1A-90	NM_020895	exon10	c.C938G	p.P313R	TGACCCCGGTGGC	.	168	21	72	0	.	85	61	24	0	0
FCGBP	8857	bcgsc.ca	37	19	40374023	40374023	+	Missense_Mutation	SNP	C	C	T	rs71334845	alternate_allele	TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	FCGBP-98	NM_003890	exon26	c.G12055A	p.V4019M	ACACCACGACTTT	.	1115	22	826	6	CGA|0.500;TGC|0.500	1	1	0	0	0
CYP2A6	1548	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41350548	41350548	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	CYP2A6-92	NM_000762	exon8	c.C1291A	p.P431T	AAAAGGGCACAAA	.	360	49	385	2	.	0	0	0	0	0
ZNF235	9310	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44792844	44792844	+	Silent	SNP	T	T	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ZNF235-137	NM_004234	exon5	c.A744G	p.V248V	AGGTGATACCTTT	.	167	41	133	1	.	0	0	0	0	0
ZNF154	7710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58213806	58213806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ZNF154-90	NM_001085384	exon3	c.A511G	p.S171G	TTTTGCTAAAGGA	.	296	41	335	0	.	0	0	0	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	.	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	106	14	81	0	C|0.500;T|0.500	2	2	0	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385799	58385799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	.	NM_001144989	exon3	c.G959A	p.G320E	CTTTTCCCAGTGT	.	96	14	76	0	.	2	2	0	0	0
MFSD9	84804	broad.mit.edu	37	2	103343361	103343361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MFSD9-155	NM_032718	exon4	c.C370T	p.L124F	GAAGGAGATAGCC	.	257	7	251	4	.	1	1	0	0	0
ZEB2	9839	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	145157390	145157390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ZEB2-297	NM_014795	exon8	c.G1364A	p.S455N	AAATTACTATTCA	.	99	13	137	1	.	1	0	1	0	0
IKZF2	22807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	213872808	213872808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	IKZF2-226	NM_016260	exon8	c.G857T	p.G286V	TTTTCCCCTGGAA	.	71	12	119	0	.	0	0	0	0	0
PER2	8864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	239162231	239162231	+	Silent	SNP	G	G	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	PER2-154	NM_022817	exon19	c.C2433T	p.T811T	AGATCCGGTGCTC	.	53	12	35	0	.	2	1	1	0	0
IDH3B	3420	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	2639399	2639399	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	IDH3B-226	NM_006899	exon12	c.T1156G	p.X386E	GGCTCTAGCTCCC	.	212	18	276	0	.	80	79	1	0	0
FRG1B	284802	bcgsc.ca	37	20	29623215	29623215	+	RNA	SNP	G	G	A	rs77485836		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	FRG1B-22	.	.	.	.	GCACTCGACAATG	.	731	43	809	29	G|0.500;A|0.500	48	46	2	0	0
SOGA1	140710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	35443624	35443624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	.	NM_080627	exon5	c.G2221A	p.E741K	GCTGTTCCTTGAC	.	85	17	98	0	.	0	0	0	0	0
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52429465	52429465	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	DNAH1-67	NM_015512	exon69	c.T11110A	p.S3704T	GCCATCTCCCTGG	.	199	36	207	0	.	1	1	0	0	0
LRIG1	26018	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	66436541	66436541	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	LRIG1-230	NM_015541	exon13	c.G1653C	p.Q551H	CCCGTCCTGCGCG	.	339	52	407	1	.	8	5	3	0	0
EPHA3	2042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	89478285	89478285	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	EPHA3-1500	NM_005233	exon12	c.A2104C	p.M702L	GAATACATGGAGA	.	77	11	74	0	.	0	0	0	0	0
ATR	545	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	142279142	142279142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ATR-1139	NM_001184	exon6	c.C1504A	p.L502M	TACACAGAGCAGT	.	224	29	244	2	.	1	0	1	0	0
CP	1356	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	148924070	148924070	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	CP-515	NM_000096	exon6	c.A1093C	p.N365H	GGATATTATCCTT	.	112	10	135	0	.	3	3	0	0	0
ABCC5	10057	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183732125	183732125	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ABCC5-137	NM_005688	exon2	c.G56C	p.S19T	CTCACACTTCTAT	.	174	37	164	2	.	6	4	2	0	0
MUC4	4585	broad.mit.edu	37	3	195506331	195506331	+	Silent	SNP	T	T	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MUC4-90	NM_018406	exon2	c.A12120T	p.S4040S	GGATGCTGAGGAA	.	50	2	57	1	.	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195510130	195510130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MUC4-90	NM_018406	exon2	c.C8321A	p.T2774N	GAGGAAGTGTTGG	.	581	40	729	2	.	0	0	0	0	0
CPZ	8532	hgsc.bcm.edu	37	4	8621250	8621250	+	Missense_Mutation	SNP	G	G	A	rs144042196		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	CPZ-93	NM_001014447	exon11	c.G1865A	p.R622H	GGGCGCGCAGGCA	.	8	5	3	0	G|1.000;A|0.000	2	2	0	0	0
GBA3	57733	broad.mit.edu	37	4	22737642	22737642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	GBA3-1	.	.	.	.	GTCTGGGACACAT	.	106	4	139	0	.	14	14	0	0	0
SEC31A	22872	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	83769958	83769958	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	SEC31A-268	NM_001077206	exon20	c.A2501C	p.H834P	CTCACATGGGGAT	.	154	25	155	1	.	0	0	0	0	0
GRID2	2895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	94690404	94690404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	GRID2-159	NM_001510	exon15	c.C2404T	p.H802Y	CTGAAGCACAAAT	.	156	21	168	0	.	0	0	0	0	0
ZCCHC10	54819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	132342536	132342536	+	Silent	SNP	T	T	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ZCCHC10-90	NM_017665	exon2	c.A118C	p.R40R	ATTTTCTTTTTCC	.	153	16	108	0	.	10	4	6	0	0
DDX41	51428	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176943931	176943931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	DDX41-226	NM_016222	exon1	c.C16A	p.P6T	GTTCGGGTTCCGA	.	227	52	174	1	.	0	0	0	0	0
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	75860944	75860944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	COL12A1-142	NM_004370	exon21	c.C4060A	p.H1354N	ATGCATGGGTATC	.	100	16	100	0	.	0	0	0	0	0
MYO6	4646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	76602272	76602272	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MYO6-92	NM_004999	exon28	c.G2972C	p.R991P	TGGCCCGACAGAA	.	97	15	88	0	.	14	6	8	0	0
MMS22L	253714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	97629854	97629854	+	Silent	SNP	A	A	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MMS22L-92	NM_198468	exon16	c.T2310A	p.I770I	AAGTTGAATAATT	.	67	10	78	0	.	1	1	0	0	0
SERINC1	57515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	122777747	122777747	+	Silent	SNP	A	A	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	SERINC1-91	NM_020755	exon3	c.T250C	p.L84L	CAACCAAAATGTT	.	74	13	78	0	.	49	26	23	0	0
SP4	6671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	21469335	21469335	+	Silent	SNP	T	T	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	SP4-95	NM_003112	exon3	c.T552C	p.T184T	TCCAACTAGTAGT	.	71	15	64	0	.	0	0	0	0	0
MYO1G	64005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	45010552	45010552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MYO1G-137	NM_033054	exon8	c.C953A	p.P318H	TCCCGGGGTGTGG	.	87	12	24	0	.	6	6	0	0	0
NUP205	23165	broad.mit.edu	37	7	135269748	135269748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	NUP205-207	NM_015135	exon8	c.C1211A	p.P404Q	TTATGCCAATGAA	.	30	4	20	0	.	0	0	0	0	0
ARMC1	55156	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	66534565	66534565	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ARMC1-91	NM_018120	exon3	c.C208G	p.R70G	TTGCACGGCATTC	.	84	14	79	1	.	6	6	0	0	0
TMC1	117531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	75355127	75355127	+	Splice_Site	SNP	T	T	C	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	TMC1-91	NM_138691	exon9	c.453+2T>C	.	CCAAGGTAGGTAT	.	73	16	76	0	.	0	0	0	0	0
NOTCH1	4851	broad.mit.edu	37	9	139391937	139391937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	NOTCH1-5459	NM_017617	exon34	c.C6254T	p.A2085V	CGGTTGGCAAAGT	.	82	4	61	0	.	4	4	0	0	0
NELFB	25920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	140158762	140158762	+	Silent	SNP	G	G	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	.	NM_015456	exon6	c.G849A	p.L283L	GGAGCTGCAGGGG	.	37	8	25	0	.	41	25	16	0	0
RPS6KA3	6197	broad.mit.edu	37	X	20222171	20222171	+	Silent	SNP	G	G	A	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	RPS6KA3-1504	NM_004586	exon4	c.C294T	p.A98A	CTTCATGGCATAA	.	102	4	105	1	.	8	8	0	0	0
FOXO4	4303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	70316474	70316474	+	Silent	SNP	C	C	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	FOXO4-986	NM_005938	exon1	c.C96T	p.T32T	CTGCACCTGGCCC	.	96	23	84	0	.	3	3	0	0	0
ALG13	79868	ucsc.edu	37	X	110987897	110987897	+	Silent	SNP	G	G	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ALG13-130	NM_001099922	exon24	c.G2697T	p.V899V	GTTAGTGATTGCC	.	39	4	37	0	.	0	0	0	0	0
OCRL	4952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	128678970	128678970	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	OCRL-206	NM_000276	exon3	c.T155G	p.V52G	AGCATGTTCAAGA	.	37	14	49	0	.	5	1	4	0	0
LRRC42	115353	broad.mit.edu;bcgsc.ca	37	1	54417869	54417876	+	Frame_Shift_Del	DEL	AAGAGAAG	AAGAGAAG	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	AAGAGAAG	AAGAGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	LRRC42-90	NM_052940	exon2	c.197_204del	p.66_68del	CACGGAAAGAGAA	.	111	13	157	0	.	0	0	0	0	0
OR6K6	128371	broad.mit.edu;bcgsc.ca	37	1	158724869	158724869	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	OR6K6-69	NM_001005184	exon1	c.264delT	p.Y88fs	TTTGTATTTCTTT	.	153	16	150	0	.	0	0	0	0	0
PPP1R15B	84919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	204379087	204379089	+	In_Frame_Del	DEL	CTA	CTA	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	CTA	CTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	PPP1R15B-652	NM_032833	exon1	c.1451_1453del	p.484_485del	.	.	67	12	60	0	.	0	0	0	0	0
HHEX	3087	broad.mit.edu	37	10	94450034	94450038	+	Frame_Shift_Del	DEL	GGGCC	GGGCC	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	GGGCC	GGGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	HHEX-227	NM_002729	exon1	c.291_295del	p.97_99del	CTTCGGGGGCCCT	.	10	3	4	0	.	0	0	0	0	0
RNASEH2C	84153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	65487867	65487867	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	RNASEH2C-90	NM_032193	exon2	c.194delG	p.G65fs	.	.	76	16	67	0	.	0	0	0	0	0
RAB15	376267	broad.mit.edu;bcgsc.ca	37	14	65418357	65418362	+	In_Frame_Del	DEL	GTATCT	GTATCT	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	GTATCT	GTATCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	RAB15-228	NM_198686	exon3	c.205_210del	p.69_70del	GGTCTGGTATCTC	.	154	19	189	0	.	0	0	0	0	0
SLC24A5	283652	broad.mit.edu	37	15	48431306	48431306	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	SLC24A5-90	NM_205850	exon7	c.1012delT	p.F338fs	ATAACCTTTTTCA	.	78	7	47	0	.	0	0	0	0	0
POLG	5428	broad.mit.edu;bcgsc.ca	37	15	89872222	89872222	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	POLG-228	NM_002693	exon4	c.975delC	p.P325fs	CTTTGTGGGGGGC	.	150	19	164	0	.	0	0	0	0	0
ANKS4B	257629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	21245180	21245180	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ANKS4B-92	NM_145865	exon1	c.122delA	p.Y41fs	.	.	144	47	141	0	.	0	0	0	0	0
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	57760151	57760152	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	CLTC-835	NM_004859	exon23	c.3762_3763del	p.1254_1255del	.	.	90	21	68	0	.	0	0	0	0	0
RNF213	57674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	78321624	78321624	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	RNF213-577	NM_001256071	exon29	c.9489delC	p.I3163fs	.	.	180	48	153	0	.	0	0	0	0	0
PKDCC	91461	broad.mit.edu;bcgsc.ca	37	2	42281437	42281445	+	In_Frame_Del	DEL	AATGCCTAC	AATGCCTAC	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	AATGCCTAC	AATGCCTAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	PKDCC-67	NM_138370	exon3	c.1024_1032del	p.342_344del	CTCTATAATGCCT	.	201	16	211	0	.	0	0	0	0	0
UNC80	285175	broad.mit.edu	37	2	210841021	210841021	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	UNC80-90	NM_032504	exon56	c.8568delG	p.Q2856fs	CATCCAGTGCAAG	.	129	8	168	0	.	0	0	0	0	0
ZSWIM3	140831	bcgsc.ca	37	20	44486494	44486501	+	Frame_Shift_Del	DEL	TGAGGACT	TGAGGACT	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	TGAGGACT	TGAGGACT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ZSWIM3-92	NM_080752	exon1	c.30_37del	p.10_13del	GACCTATGAGGAC	.	101	6	107	0	.	0	0	0	0	0
STAG2	10735	broad.mit.edu	37	X	123190070	123190070	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	STAG2-134	NM_001042749	exon14	c.1289delA	p.E430fs	CTGGAGAATTTCT	.	25	9	16	0	.	0	0	0	0	0
MUC6	4588	broad.mit.edu	37	11	1019461	1019462	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MUC6-23	NM_005961	exon30	c.3844_3845insA	p.A1282fs	ATGTGGCTTGTGG	.	439	7	304	0	.	0	0	0	0	0
MSH6	2956	broad.mit.edu;bcgsc.ca	37	2	48025884	48025885	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MSH6-3014	NM_000179	exon4	c.762_763insG	p.S254fs	AGATTCTGAGAGT	.	57	8	95	0	.	0	0	0	0	0
NDUFB5	4711	broad.mit.edu	37	3	179322628	179322629	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	NDUFB5-91	NM_002492	exon1	c.25_26insG	p.R9fs	TTGCGGCGGGTTT	.	100	16	91	0	.	0	0	0	0	0
IDH3B	3420	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	2639397	2639398	+	Missense_Mutation	DNP	CT	CT	TA	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	IDH3B-226	NM_006899	exon12	c.A1157T	.	GGGCTCTAGCTCC	.	210.0	20.0	278.0	0.0	.	0	0	0	0	0