Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PRDM2	7799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	14068533	14068533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	PRDM2-116	NM_015866	exon5	c.G265T	p.D89Y	TGCATTGATGCCA	.	65	35	76	0	.	4	1	3	0	0
INSRR	3645	broad.mit.edu	37	1	156818724	156818724	+	Silent	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	INSRR-1403	NM_014215	exon7	c.C1560T	p.Y520Y	CTTGTAGTACACG	.	8	3	14	0	.	0	0	0	0	0
NEK2	4751	broad.mit.edu	37	1	211843673	211843673	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	NEK2-765	NM_002497	exon5	c.C715G	p.R239G	AGTAACGGTATGG	.	218	5	200	0	.	2	2	0	0	0
PCDH15	65217	broad.mit.edu;ucsc.edu	37	10	55568839	55568839	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	PCDH15-193	.	.	.	.	AATGTTTTTCCTT	.	27	13	29	0	.	0	0	0	0	0
AP3M1	26985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	75898090	75898090	+	Silent	SNP	T	T	C	rs147488745	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	AP3M1-90	NM_207012	exon3	c.A48G	p.L16L	CTTCTCTAGAAAT	.	93	50	71	0	T|1.000;G|0.000	14	4	10	0	0
MUC2	4583	broad.mit.edu	37	11	1098668	1098668	+	Silent	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	MUC2-90	NM_002457	exon38	c.G7026A	p.V2342V	ACTGGTGCCCCCG	.	25	8	45	0	.	0	0	0	0	0
OR8I2	120586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	55861472	55861472	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	OR8I2-113	NM_001003750	exon1	c.C689G	p.A230G	AGTCAGCAGCAGG	.	91	26	101	0	.	0	0	0	0	0
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	57076186	57076186	+	Silent	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	TNKS1BP1-91	NM_033396	exon6	c.G3999A	p.G1333G	CCGTAGCCCCTGA	.	244	100	404	2	.	39	17	22	0	0
SLC3A2	6520	ucsc.edu	37	11	62648666	62648666	+	Silent	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	SLC3A2-90	NM_001012662	exon4	c.G477A	p.A159A	AGCCGCGGCTAAG	.	18	4	25	0	.	249	248	0	1	0
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	117375681	117375681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	DSCAML1-159	NM_020693	exon10	c.G2320A	p.D774N	AGCCGTCCACCGA	.	67	27	102	0	.	23	13	10	0	0
LIMA1	51474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	50571511	50571511	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	LIMA1-91	NM_001113546	exon11	c.G1619C	p.G540A	GAACTTCCAAGTT	.	193	89	213	0	.	66	35	31	0	0
LAMP1	3916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	113964011	113964011	+	Silent	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	LAMP1-514	NM_005561	exon3	c.C237T	p.S79S	CAGCTCCTGTGGA	.	117	64	116	0	.	546	275	271	0	0
BAZ1A	11177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	35242930	35242930	+	Silent	SNP	A	A	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	BAZ1A-291	NM_013448	exon20	c.T3000C	p.V1000V	ATCTGTAACCTGT	.	46	26	43	0	.	0	0	0	0	0
ESR2	2100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	64746749	64746749	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ESR2-611	NM_001214902	exon2	c.G485C	p.G162A	CAGACTCCATAGT	.	345	152	426	1	.	0	0	0	0	0
HERC1	8925	ucsc.edu	37	15	63901303	63901303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	HERC1-666	NM_003922	exon78	c.G14563A	p.E4855K	AGCCCTCGGCGTT	.	36	4	34	0	.	17	17	0	0	0
CCP110	9738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	19548870	19548870	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	CCP110-90	NM_001199022	exon4	c.T1879A	p.F627I	TCTGGCTTCGTTA	.	62	25	51	0	.	11	4	7	0	0
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	24826534	24826534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	TNRC6A-92	NM_014494	exon19	c.G4739A	p.S1580N	ACAGCAGTACTTC	.	136	36	93	0	.	17	14	3	0	0
CNOT1	23019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	58585134	58585134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	CNOT1-95	NM_206999	exon24	c.A3244G	p.T1082A	GATCTGTGGCCAC	.	464	292	226	0	.	57	14	41	1	1
GP1BA	2811	hgsc.bcm.edu;broad.mit.edu	37	17	4837101	4837101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	.	NM_000173	exon2	c.C1202T	p.T401I	TGACCACCCTGGA	.	56	14	77	0	.	3	2	1	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	632	81	334	49	.	89	12	77	0	0
UBB	7314	broad.mit.edu	37	17	16285476	16285476	+	Silent	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	UBB-47	NM_018955	exon2	c.C255G	p.T85T	CCTGACCGGCAAG	.	189	4	159	0	.	6957	6944	3	2	8
BLMH	642	hgsc.bcm.edu;broad.mit.edu	37	17	28601215	28601215	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	BLMH-91	NM_000386	exon7	c.A646G	p.I216V	GGAATATCTGGAA	.	85	14	58	1	.	0	0	0	0	0
MED24	9862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	38182477	38182477	+	Silent	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	MED24-187	NM_014815	exon19	c.G1917A	p.S639S	CTGCAGCGACTTC	.	200	45	203	0	.	95	62	33	0	0
ITGB3	3690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	45369560	45369560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ITGB3-714	NM_000212	exon10	c.C1316T	p.S439F	AGAAGTCCTTTAC	.	104	67	108	0	.	145	52	93	0	0
HOXB2	3212	broad.mit.edu	37	17	46620496	46620496	+	Silent	SNP	A	A	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	HOXB2-90	NM_002145	exon2	c.T1005C	p.P335P	GGAAAAAGGGACC	.	160	3	138	0	.	89	89	0	0	0
HSF5	124535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	56540550	56540550	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	HSF5-71	NM_001080439	exon4	c.G1135C	p.V379L	CATCAACTATCTG	.	227	69	144	0	.	0	0	0	0	0
TEX14	56155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	56663339	56663339	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	TEX14-810	NM_001201457	exon18	c.C2911G	p.P971A	CGTCGGGCTCATT	.	257	74	209	1	.	0	0	0	0	0
METTL2A	339175	broad.mit.edu	37	17	60501296	60501296	+	Silent	SNP	A	A	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	METTL2A-248	NM_181725	exon1	c.A33G	p.A11A	ACCTGCAGTCCTC	.	63	21	47	0	.	67	42	25	0	0
CYB561	1534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	61511913	61511913	+	Silent	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	CYB561-91	NM_001915	exon6	c.C606T	p.N202N	CAGCACGTTGGCC	.	50	33	44	0	.	142	57	85	0	0
ABCA5	23461	hgsc.bcm.edu;broad.mit.edu	37	17	67303077	67303077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ABCA5-93	NM_018672	exon5	c.C577T	p.L193F	TCCAAAGAGAAAC	.	113	39	63	0	.	4	2	2	0	0
NOTUM	147111	broad.mit.edu	37	17	79913365	79913365	+	Silent	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	NOTUM-22	NM_178493	exon9	c.C1044T	p.N348N	GTGCACGTTGTCC	.	54	20	43	0	.	0	0	0	0	0
HCN2	610	broad.mit.edu	37	19	615935	615935	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	HCN2-90	NM_001194	exon8	c.G2131C	p.V711L	CAGCGCGTGGGCC	.	22	3	36	0	.	0	0	0	0	0
ZNF284	342909	broad.mit.edu	37	19	44590761	44590761	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	.	NM_001037813	exon5	c.G1130C	p.G377A	TATGTGGGAAGGG	.	110	4	112	0	.	2	2	0	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	EEF1B2-227	NM_021121	exon3	c.A127G	p.S43G	GTGTCCAGCCCAC	.	111	5	133	3	.	814	812	0	1	1
ANKZF1	55139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	220099828	220099828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ANKZF1-92	NM_001042410	exon10	c.G1485T	p.W495C	GCTCTGGAATGCA	.	57	22	68	0	.	28	18	10	0	0
RIN2	54453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	19955386	19955386	+	Silent	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	RIN2-660	NM_001242581	exon8	c.C864T	p.S288S	TGCCTCCCTGCGT	.	68	33	105	0	.	18	11	7	0	0
RBFOX2	23543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	36206007	36206007	+	Silent	SNP	A	A	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	RBFOX2-90	NM_001082579	exon3	c.T282C	p.P94P	AGTAAAAGGCTGA	.	131	58	172	1	.	49	25	24	0	0
PLCL2	23228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	17051783	17051783	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	PLCL2-229	NM_015184	exon2	c.G567T	p.L189F	AGAATTGCATAAA	.	161	53	102	1	.	14	10	4	0	0
TRAK1	22906	ucsc.edu	37	3	42251523	42251523	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	TRAK1-91	NM_001265608	exon14	c.A2009C	p.Y670S	GAAGTTACCCGAG	.	65	3	75	3	.	11	9	2	0	0
C3orf27	23434	broad.mit.edu	37	3	128292497	128292497	+	Missense_Mutation	SNP	C	C	T	rs141693917		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	C3orf27-90	NM_007354	exon3	c.G76A	p.V26I	GGGAGACGCTGAG	.	58	10	50	0	C|1.000;T|0.000	0	0	0	0	0
KY	339855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	134323200	134323200	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	KY-24	NM_178554	exon11	c.G1207T	p.E403X	ACACCTCCAACTT	.	143	104	111	0	.	6	4	2	0	0
HPS3	84343	hgsc.bcm.edu;broad.mit.edu	37	3	148885021	148885021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	HPS3-158	NM_032383	exon15	c.G2790T	p.E930D	AGAAGAGAACCGG	.	45	26	29	1	.	1	1	0	0	0
VPS8	23355	ucsc.edu	37	3	184603940	184603940	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	VPS8-91	NM_001009921	exon21	c.C1777T	p.R593X	CTGCAGCGAAAGT	.	40	4	21	0	.	0	0	0	0	0
CRIPAK	285464	broad.mit.edu	37	4	1388729	1388729	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	CRIPAK-90	NM_175918	exon1	c.G430C	p.G144R	CCATGCGGAGTGC	.	254	4	394	1	.	19	19	0	0	0
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	155256161	155256161	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	DCHS2-94	NM_001142552	exon4	c.A2572C	p.I858L	CATTAATGACAGC	.	108	55	89	1	.	0	0	0	0	0
SLC27A6	28965	ucsc.edu	37	5	128302311	128302311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	SLC27A6-90	NM_001017372	exon1	c.G481A	p.D161N	GGCGCAGGTAGAG	.	21	4	37	0	.	0	0	0	0	0
PCDHB15	56121	hgsc.bcm.edu	37	5	140625665	140625665	+	Silent	SNP	T	T	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	PCDHB15-156	NM_018935	exon1	c.T519C	p.S173S	TATTTCTCCCAAT	.	27	2	61	0	.	36	36	0	0	0
HNRNPAB	3182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	177632984	177632984	+	Silent	SNP	G	G	A	rs201431713	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	HNRNPAB-22	NM_031266	exon3	c.G351A	p.L117L	TATCCTGTTCAAA	.	198	104	193	0	G|0.999;C|0.001	193	108	84	0	1
CCDC90A	63933	broad.mit.edu;ucsc.edu	37	6	13800602	13800602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	CCDC90A-90	NM_001031713	exon5	c.G754A	p.E252K	GTAGTTCGAGTTT	.	26	9	14	0	.	0	0	0	0	0
MDFI	4188	broad.mit.edu;ucsc.edu	37	6	41614025	41614025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	MDFI-90	NM_005586	exon3	c.G238A	p.V80I	CTCGACGTCCCCA	.	32	15	67	0	.	0	0	0	0	0
ICK	22858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	52878690	52878690	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ICK-421	NM_016513	exon10	c.C922G	p.L308V	TTTCCAGGATGCC	.	48	23	49	0	.	10	6	4	0	0
CCM2	83605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	45112359	45112359	+	Silent	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	CCM2-90	NM_001029835	exon7	c.C843T	p.T281T	GGAGACCTACGAG	.	174	41	93	0	.	101	79	22	0	0
ZKSCAN5	23660	broad.mit.edu	37	7	99123898	99123898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ZKSCAN5-91	NM_145102	exon6	c.G1235T	p.R412L	CTTTCCGGGTGAG	.	299	7	244	0	.	16	16	0	0	0
ZKSCAN1	7586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	99621201	99621201	+	Silent	SNP	A	A	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ZKSCAN1-93	NM_003439	exon2	c.A72G	p.V24V	TATCGTAATAGTG	.	191	48	121	0	.	36	27	9	0	0
SLC4A2	6522	broad.mit.edu	37	7	150769158	150769158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	SLC4A2-90	NM_003040	exon16	c.C2470A	p.Q824K	TTCACCCAGGAGA	.	376	12	266	0	.	266	266	0	0	0
ASB10	136371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	150878302	150878302	+	Silent	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ASB10-226	NM_001142459	exon3	c.G828C	p.L276L	GCTGCACAGCTGC	.	64	17	45	0	.	0	0	0	0	0
WISP1	8840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	134225321	134225321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	WISP1-610	NM_003882	exon2	c.C284T	p.P95L	GTGACCCCCACCG	.	82	41	141	0	.	0	0	0	0	0
COL27A1	85301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	117047026	117047026	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	COL27A1-94	NM_032888	exon41	c.C3956G	p.P1319R	TGGGACCCCTTGG	.	98	35	138	0	.	36	13	22	0	1
TMEM203	94107	broad.mit.edu;ucsc.edu	37	9	140099503	140099503	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	TMEM203-22	NM_053045	exon1	c.T364A	p.F122I	GAATGAAGAGCGG	.	44	24	67	0	.	76	33	43	0	0
ARID4A	5926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	58827698	58827698	+	Nonsense_Mutation	DEL	C	C	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ARID4A-231	NM_002892	exon19	c.2018delC	p.S673X	.	.	132	59	85	0	.	0	0	0	0	0
SLC6A4	6532	hgsc.bcm.edu	37	17	28525539	28525565	+	Frame_Shift_Del	DEL	TAATAATACGCTATTGGGAAGAAAATA	TAATAATACGCTATTGGGAAGAAAATA	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	TAATAATACGCTATTGGGAAGAAAATA	TAATAATACGCTATTGGGAAGAAAATA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	SLC6A4-94	NM_001045	exon15	c.1819_1828del	p.607_610del	.	.	89	18	81	0	.	0	0	0	0	0
KIAA1211L	343990	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	99413866	99413867	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	.	NM_207362	exon8	c.2550_2551del	p.850_851del	.	.	102	42	181	0	.	0	0	0	0	0
HIP1	3092	broad.mit.edu	37	7	75168684	75168684	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	HIP1-1085	NM_005338	exon30	c.3020delA	p.K1007fs	TAGTGCTTTTTCC	.	805	8	554	0	.	0	0	0	0	0
PDK4	5166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	95221864	95221872	+	In_Frame_Del	DEL	CCAATGTGG	CCAATGTGG	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	CCAATGTGG	CCAATGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	PDK4-358	NM_002612	exon5	c.567_575del	p.189_192del	.	.	204	78	170	0	.	0	0	0	0	0
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu	37	X	44920581	44920581	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	KDM6A-2748	NM_021140	exon14	c.1342delA	p.N448fs	.	.	15	14	11	0	.	0	0	0	0	0
EMD	2010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	153609241	153609241	+	Splice_Site	DEL	G	G	-	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	EMD-130	NM_000117	exon6	c.450-1G>-	.	.	.	45	40	70	0	.	0	0	0	0	0
SRSF7	6432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	38978383	38978384	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	SRSF7		exon1	c.G15T	p.R6W	GTACCGCCCGTAA	.	87.0	32.0	128.0	0.0	.	0	0	0	0	0