Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PEX10	5192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	2341814	2341814	+	Silent	SNP	A	A	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PEX10-90	NM_002617	exon2	c.T189G	p.L63L	ACCTGCAAGTGTG	.	61	25	47	0	.	1	1	0	0	0
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	10431203	10431203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KIF1B-93	NM_015074	exon43	c.C4691T	p.S1564F	AGTTGTCTGATAT	.	180	45	101	0	.	0	0	0	0	0
DRAXIN	374946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11775243	11775243	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_198545	exon6	c.C915T	p.F305F	ATGCTTCGATGAC	.	171	29	126	0	.	2	2	0	0	0
LOC440563	0	bcgsc.ca	37	1	13183615	13183615	+	Silent	SNP	T	T	C	rs200176197		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_001136561	exon2	c.A258G	p.A86A	TGGCTCTGCAGCC	.	50	17	94	9	T|0.998;C|0.002	406	406	0	0	0
CASP9	842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	15844625	15844625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CASP9-1083	NM_001229	exon2	c.C398T	p.S133F	CCTCCAGAACCAA	.	203	36	128	0	.	55	43	12	0	0
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu	37	1	21188793	21188793	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	EIF4G3-91	NM_001198801	exon21	c.G2979C	p.E993D	AATTTTCTCCATC	.	83	6	82	0	.	22	21	1	0	0
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	21226358	21226358	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	EIF4G3-91	NM_001198802	exon14	c.G1681T	p.E561X	CTCTTTCAGGATG	.	212	50	300	1	.	17	17	0	0	0
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	21226427	21226427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	EIF4G3-91	NM_001198802	exon14	c.G1612A	p.E538K	CCTCTTCAGCTTT	.	164	38	206	0	.	0	0	0	0	0
CDC42	998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22413230	22413230	+	Silent	SNP	C	C	G	rs143448220	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CDC42-1084	NM_001039802	exon6	c.C357G	p.L119L	TGATCTCAGAGAT	.	285	72	383	0	C|1.000;T|0.000	304	207	97	0	0
CDC42	998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22413329	22413329	+	Silent	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CDC42-1084	NM_001039802	exon6	c.C456G	p.V152V	GGCTGTCAAGTAT	.	245	62	306	0	.	236	173	63	0	0
INPP5B	3633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38328025	38328025	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	INPP5B-227	NM_005540	exon24	c.C2704G	p.Q902E	ATTCTTGAGCCTT	.	131	19	134	0	.	10	6	4	0	0
INPP5B	3633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38338748	38338748	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	INPP5B-227	NM_005540	exon19	c.C2041T	p.L681L	GAACCAGAATGTC	.	188	31	207	0	.	9	8	1	0	0
PTPRF	5792	broad.mit.edu;bcgsc.ca	37	1	44063474	44063474	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PTPRF-232	NM_002840	exon12	c.C1869T	p.V623V	CACGGTCCGGGTA	.	27	15	25	0	.	348	159	189	0	0
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	44063522	44063522	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PTPRF-232	NM_002840	exon12	c.C1917T	p.I639I	CGTTATCACCCAG	.	30	17	27	0	.	428	193	234	0	1
CCDC18	343099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	93705376	93705376	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CCDC18-138	NM_206886	exon21	c.G2904C	p.L968F	GGAATTGAGAGAT	.	53	8	62	0	.	3	3	0	0	0
DDX20	11218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	112309171	112309171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	DDX20-227	NM_007204	exon11	c.G2125A	p.E709K	AATCCAGAGAAAT	.	123	38	85	0	.	8	6	2	0	0
DDX20	11218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	112309315	112309315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	DDX20-227	NM_007204	exon11	c.G2269A	p.D757N	TGGTATGACTGTC	.	132	39	70	2	.	10	10	0	0	0
ST7L	54879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	113124686	113124686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ST7L-90	NM_138728	exon9	c.G997A	p.E333K	GATTTTCATGGAT	.	129	35	84	1	.	2	2	0	0	0
POGZ	23126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151377387	151377387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	POGZ-93	NM_015100	exon19	c.C4124T	p.P1375L	TCTTCAGGAGATG	.	190	44	144	0	.	30	19	11	0	0
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152281276	152281276	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FLG-106	NM_002016	exon3	c.C6086G	p.S2029C	ACTGCAGATGAAG	.	1229	541	1055	0	.	0	0	0	0	0
CHRNB2	1141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154544111	154544111	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CHRNB2-90	NM_000748	exon5	c.C812A	p.S271X	GCATCTCAGTGCT	.	281	167	225	1	.	0	0	0	0	0
GON4L	54856	broad.mit.edu;bcgsc.ca	37	1	155723185	155723185	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	GON4L-93	NM_001037533	exon29	c.C5652T	p.Y1884Y	GCTCTTGTAGGAT	.	278	13	239	0	.	12	12	0	0	0
GON4L	54856	broad.mit.edu;bcgsc.ca	37	1	155723194	155723194	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	GON4L-93	NM_001037533	exon29	c.C5643G	p.S1881R	GGATTTGCTGTCA	.	251	13	233	0	.	0	0	0	0	0
OR10Z1	128368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158576303	158576303	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	OR10Z1-70	NM_001004478	exon1	c.C75T	p.L25L	GCAGCTCCTTCTC	.	239	34	171	0	.	0	0	0	0	0
OR6N1	128372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158735810	158735810	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	OR6N1-69	NM_001005185	exon1	c.C663T	p.I221I	GCAGATGATCTGC	.	231	119	185	0	.	0	0	0	0	0
PYHIN1	149628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158943473	158943473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PYHIN1-94	NM_152501	exon8	c.G1396A	p.A466T	TCGCCTGCAAACT	.	105	54	67	0	.	0	0	0	0	0
F5	2153	broad.mit.edu	37	1	169493136	169493136	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	F5-157	NM_000130	exon20	c.G5795T	p.W1932L	GGCTCCCAGTAAC	.	254	9	135	0	.	0	0	0	0	0
FASLG	356	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	172634825	172634825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FASLG-618	NM_000639	exon4	c.C515T	p.S172F	TGCTTTCTGGAGT	.	139	11	81	0	.	0	0	0	0	0
CEP350	9857	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	180044161	180044161	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CEP350-26	NM_014810	exon28	c.C5572T	p.L1858L	AGGTTTCTGACAA	.	34	8	21	0	.	0	0	0	0	0
OR2L8	391190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	248112585	248112585	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	OR2L8-70	NM_001001963	exon1	c.G426A	p.L142L	TGTGCTGATGATA	.	270	24	253	0	.	0	0	0	0	0
FAM171A1	221061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	15256140	15256140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FAM171A1-138	NM_001010924	exon8	c.G1447A	p.D483N	AGTCATCATTGCC	.	244	27	177	0	.	3	3	0	0	0
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	37451603	37451603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ANKRD30A-161	NM_052997	exon16	c.G1759A	p.E587K	GCCTTCGAGGTAT	.	254	51	164	1	.	0	0	0	0	0
CSGALNACT2	55454	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	43654255	43654255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CSGALNACT2-69	NM_018590	exon3	c.C754T	p.R252C	CTCTTCCGCCCTT	.	67	10	75	0	.	14	9	5	0	0
C10orf10	11067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	45472882	45472882	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	C10orf10-90	NM_007021	exon2	c.C597T	p.L199L	TGTTCTGAGGACA	.	100	24	153	0	.	92	70	22	0	0
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61830133	61830133	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ANK3-107	NM_020987	exon37	c.C10506T	p.F3502F	TGTGAAGAACTGG	.	65	16	97	0	.	0	0	0	0	0
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61830689	61830689	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ANK3-107	NM_020987	exon37	c.C9950G	p.S3317X	TCGCTTGAATCAC	.	157	41	193	0	.	0	0	0	0	0
PRF1	5551	ucsc.edu;bcgsc.ca	37	10	72360284	72360284	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PRF1-578	NM_001083116	exon2	c.C375T	p.I125I	GTTGCGGATGCTA	.	39	6	38	0	.	0	0	0	0	0
CHST3	9469	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	73765714	73765714	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CHST3-90	NM_004273	exon2	c.C114G	p.I38M	CTTCATCGAAAAG	.	147	9	175	0	.	3	3	0	0	0
CDHR1	92211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	85956359	85956359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CDHR1-91	NM_001171971	exon3	c.G250A	p.D84N	TCTGTTGACCCCA	.	109	66	155	0	.	0	0	0	0	0
CALHM1	255022	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	105215149	105215149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CALHM1-91	NM_001001412	exon2	c.C911T	p.T304M	CAGCTCGTGAGCA	.	54	18	69	0	.	0	0	0	0	0
TRUB1	142940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	116734920	116734920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TRUB1-90	NM_139169	exon8	c.A832G	p.T278A	ACCCGAACCAAAC	.	112	24	120	0	.	18	15	3	0	0
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	129910532	129910532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MKI67-519	NM_002417	exon9	c.G1834A	p.E612K	GAACCTCTGTCTG	.	84	11	159	0	.	22	21	1	0	0
TTC40	54777	broad.mit.edu	37	10	134648258	134648258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_001200049	exon48	c.G6766A	p.E2256K	TCTCTTCCACCTG	.	19	4	48	0	.	0	0	0	0	0
MTG1	92170	broad.mit.edu;bcgsc.ca	37	10	135209677	135209677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MTG1-91	NM_138384	exon3	c.C188T	p.S63L	CACTTTCAGGCCG	.	233	15	368	0	.	0	0	0	0	0
OR51G2	81282	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4936273	4936273	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	OR51G2-70	NM_001005238	exon1	c.C621T	p.V207V	GACGATGACAAAC	.	27	11	50	0	.	0	0	0	0	0
IPO7	10527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	9451343	9451343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	IPO7-271	NM_006391	exon15	c.G1714A	p.E572K	AGTGAAGAAGTTA	.	26	12	51	0	.	19	7	12	0	0
COPB1	1315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	14501121	14501121	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	COPB1-91	NM_001144062	exon11	c.C1352G	p.S451C	TTGACAGATTTAA	.	100	73	134	0	.	0	0	0	0	0
RAG2	5897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	36614896	36614896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	RAG2-95	NM_001243785	exon3	c.G823A	p.G275S	AGCCACCAACAAT	.	44	22	98	0	.	0	0	0	0	0
OR9G9	504191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	56468116	56468116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_001013358	exon1	c.A253G	p.I85V	ACCTGCATCTCTG	.	174	22	191	0	.	0	0	0	0	0
LPXN	9404	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	58295114	58295114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	LPXN-91	NM_001143995	exon9	c.G989A	p.R330Q	GTTCCCCGGCGGT	.	38	6	68	0	.	4	3	1	0	0
OR4D11	219986	hgsc.bcm.edu;broad.mit.edu	37	11	59271133	59271133	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	OR4D11-70	NM_001004706	exon1	c.C85G	p.L29V	TTGTTTCTTTTTT	.	99	5	181	0	.	0	0	0	0	0
GSTP1	2950	ucsc.edu	37	11	67352042	67352042	+	Splice_Site	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	GSTP1-91	NM_000852	exon3	c.144+1G>C	.	TCCTGCGTAAGTG	.	61	1	43	0	.	12	12	0	0	0
LRP5	4041	broad.mit.edu;bcgsc.ca	37	11	68197137	68197137	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	LRP5-661	NM_002335	exon17	c.C3732T	p.L1244L	CCACCTCGTGCTC	.	502	19	128	0	.	340	333	7	0	0
NARS2	79731	hgsc.bcm.edu	37	11	78154732	78154732	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	NARS2-92	NM_024678	exon12	c.C1237G	p.H413D	AGAAATGGTATCG	.	73	4	81	0	.	7	7	0	0	0
FAM181B	220382	broad.mit.edu	37	11	82444012	82444012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FAM181B-135	NM_175885	exon1	c.G760A	p.D254N	CCAGGTCGCCCAA	.	10	4	19	0	.	1	1	0	0	0
CREBZF	58487	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	85375684	85375684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CREBZF-91	NM_001039618	exon1	c.C236T	p.S79F	TCGGGGGAGGGCG	.	78	41	151	0	.	14	4	10	0	0
MTMR2	8898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	95621408	95621408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MTMR2-91	NM_016156	exon2	c.C98T	p.S33L	TTCTCTGAATGAG	.	19	7	29	0	.	7	3	4	0	0
YAP1	10413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102080284	102080284	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	YAP1-659	NM_001130145	exon6	c.C1021G	p.P341A	AATTCTCCAAAAT	.	114	62	139	0	.	2	0	2	0	0
YAP1	10413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102098224	102098224	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	YAP1-659	NM_001130145	exon8	c.G1188C	p.E396D	AGATGAGAGTACA	.	50	12	60	0	.	62	46	16	0	0
HTR3A	3359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113856896	113856896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HTR3A-90	NM_000869	exon6	c.A722G	p.Y241C	AGTTCTATGTGAG	.	132	82	217	1	.	0	0	0	0	0
PCSK7	9159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117097976	117097976	+	Silent	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PCSK7-658	NM_004716	exon5	c.G666T	p.V222V	ATTCTCCACATCC	.	138	41	231	2	.	16	11	5	0	0
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6167128	6167128	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	VWF-163	NM_000552	exon14	c.C1616G	p.S539C	AGCCCAGAGGGGG	.	105	31	176	0	.	44	42	2	0	0
CAPRIN2	65981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	30906661	30906661	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CAPRIN2-92	NM_023925	exon1	c.G37C	p.E13Q	TGAGCTCGAAACC	.	169	15	179	0	.	1	1	0	0	0
SLC2A13	114134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	40422219	40422219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SLC2A13-515	NM_052885	exon3	c.G809A	p.G270E	GTCTGTCCTTTCT	.	184	39	166	0	.	2	2	0	0	0
DDX23	9416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49231830	49231830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	DDX23-539	NM_004818	exon6	c.G514A	p.E172K	GAGCTTCAGCCTC	.	232	92	241	0	.	86	42	44	0	0
SPATS2	65244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49916614	49916614	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SPATS2-135	NM_023071	exon12	c.G1089C	p.K363N	AAAGAAGAGCATT	.	80	37	65	0	.	18	10	8	0	0
RARG	5916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53607847	53607847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	RARG-722	NM_000966	exon7	c.T809C	p.I270T	ACCAGGATATCTA	.	365	139	412	0	.	2	2	0	0	0
DPY19L2	283417	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	64061939	64061939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	DPY19L2-515	NM_173812	exon1	c.C235T	p.L79F	GGCCGAGAAGAAA	.	133	22	167	0	.	0	0	0	0	0
LLPH	84298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	66522754	66522754	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	LLPH-514	NM_032338	exon2	c.C133T	p.Q45X	TCTCTTGAACATC	.	228	34	175	0	.	51	47	4	0	0
AMDHD1	144193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	96354342	96354342	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	AMDHD1-90	NM_152435	exon5	c.G754C	p.D252H	GGAAAAGATATAG	.	178	65	157	0	.	0	0	0	0	0
C12orf42	374470	broad.mit.edu	37	12	103699754	103699754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	C12orf42-91	NM_001099336	exon5	c.C629T	p.S210F	TTACCAGAATTTT	.	358	7	286	0	.	0	0	0	0	0
KSR2	283455	broad.mit.edu	37	12	118293234	118293234	+	Silent	SNP	T	T	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KSR2-1449	NM_173598	exon3	c.A384G	p.S128S	CTCACCTGACATG	.	100	3	106	0	.	1	1	0	0	0
P2RX4	5025	broad.mit.edu;bcgsc.ca	37	12	121648006	121648006	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	P2RX4-68	NM_001261398	exon1	c.C39T	p.F13F	CCTGTTCGAGTAC	.	23	9	19	0	.	4	4	0	0	0
UTP14C	9724	hgsc.bcm.edu;broad.mit.edu	37	13	52603705	52603705	+	Silent	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	UTP14C-138	NM_021645	exon2	c.G765C	p.V255V	AGTCGTGAAGAAA	.	83	5	77	0	.	25	25	0	0	0
OLFM4	10562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	53624805	53624805	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	OLFM4-69	NM_006418	exon5	c.G1432C	p.V478L	GAAAAAGTGCAGA	.	129	18	84	0	.	0	0	0	0	0
RBM26	64062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	79945132	79945132	+	Silent	SNP	C	C	T	rs199797508		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	RBM26-91	NM_022118	exon5	c.G582A	p.E194E	GTCCCTCTCACGA	.	352	47	266	0	C|0.999;T|0.000	34	31	3	0	0
CIDEB	27141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24775203	24775203	+	Silent	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CIDEB-90	NM_014430	exon6	c.C477G	p.L159L	AGAGTAGAGCCCG	.	104	24	127	0	.	33	29	4	0	0
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	45642339	45642339	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FANCM-569	NM_020937	exon13	c.C2242G	p.Q748E	ACACATCAAGTTG	.	88	55	108	0	.	1	1	0	0	0
ZBTB1	22890	hgsc.bcm.edu	37	14	64989477	64989477	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ZBTB1-91	NM_014950	exon2	c.G1255C	p.E419Q	GATGCTGAAAATG	.	38	3	24	0	.	39	39	0	0	0
SLC8A3	6547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	70633987	70633987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SLC8A3-225	NM_183002	exon2	c.G1153A	p.E385K	GCACCTCGCTCAT	.	149	87	205	2	.	1	0	1	0	0
PAPLN	89932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	73720491	73720491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PAPLN-70	NM_173462	exon11	c.C1043T	p.S348L	CCTGCTCAGCCTC	.	135	30	157	1	.	1	1	0	0	0
FLRT2	23768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	86088747	86088747	+	Missense_Mutation	SNP	G	G	C	rs199966508	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FLRT2-94	NM_013231	exon2	c.G889C	p.D297H	GTTTTTGATAATC	.	405	57	367	1	G|0.999;T|0.000	0	0	0	0	0
EML5	161436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	89161727	89161727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	EML5-93	NM_183387	exon16	c.G2416A	p.G806R	TCTCTCCTTTCTT	.	77	17	44	0	.	1	1	0	0	0
MARK3	4140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	103932113	103932113	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MARK3-360	NM_001128919	exon8	c.G760C	p.D254H	CCCTTTGATGGGC	.	56	9	94	0	.	31	23	8	0	0
MARK3	4140	ucsc.edu	37	14	103932725	103932725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MARK3-360	NM_001128919	exon10	c.G943A	p.E315K	GAAGATGAACTCA	.	19	3	46	0	.	50	38	12	0	0
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	105409722	105409722	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	AHNAK2-47	NM_138420	exon7	c.C12066T	p.S4022S	GTCAGCGGAAGGG	.	126	88	333	0	.	4	4	0	0	0
ZFYVE19	84936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41099974	41099974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ZFYVE19-91	NM_001077268	exon1	c.G187A	p.D63N	CGGCGTGATCTCA	.	30	18	43	0	.	15	8	7	0	0
ZFYVE19	84936	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41100015	41100015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ZFYVE19-91	NM_001077268	exon1	c.G228A	p.M76I	CACCATGGAGAGT	.	37	10	39	0	.	5	2	3	0	0
INO80	54617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41384347	41384347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	INO80-72	NM_017553	exon5	c.G415T	p.D139Y	GAGAATCAGCCTC	.	42	19	65	0	.	8	2	6	0	0
TRPM7	54822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	50906430	50906430	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TRPM7-392	NM_017672	exon14	c.C1525G	p.L509V	CAATCAGAGTGAT	.	50	24	80	2	.	13	5	8	0	0
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	51773559	51773559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	DMXL2-99	NM_001174116	exon24	c.C5744T	p.S1915F	AAGGCAGATGTTT	.	185	88	195	1	.	4	1	3	0	0
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	86269660	86269660	+	Silent	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	AKAP13-258	NM_006738	exon27	c.C6777G	p.L2259L	TCTTCTCACTGAC	.	130	31	143	0	.	23	18	5	0	0
PRC1	9055	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	91524227	91524227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PRC1-92	NM_199413	exon6	c.G709A	p.E237K	GCCCCTCACACAC	.	125	15	161	0	.	54	41	13	0	0
ZNF689	115509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30616559	30616559	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ZNF689-68	NM_138447	exon3	c.T529C	p.Y177H	AAGGGTAAGGCTT	.	70	19	153	0	.	9	7	2	0	0
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30749163	30749163	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SRCAP-94	NM_006662	exon34	c.C7802G	p.S2601C	ACCTTTCTCTCAC	.	84	24	136	0	.	24	15	9	0	0
BBS2	583	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	56518732	56518732	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	BBS2-91	NM_031885	exon17	c.C2107T	p.R703X	TGCTTCGAATTGC	.	75	19	78	0	.	7	5	2	0	0
CMTM2	146225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	66614056	66614056	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CMTM2-91	NM_144673	exon2	c.G413C	p.R138T	TTCATAGATACAT	.	114	8	164	0	.	0	0	0	0	0
AARS	16	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	70316659	70316659	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	AARS-91	NM_001605	exon2	c.C8G	p.S3C	AGAGTAGAGTCCA	.	141	76	202	0	.	22	9	13	0	0
HYDIN	54768	broad.mit.edu;bcgsc.ca	37	16	70896078	70896078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HYDIN-92	NM_001270974	exon69	c.G11650A	p.E3884K	AACCCTCGGCCCA	.	34	9	46	0	.	0	0	0	0	0
PRPF8	10594	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	1586885	1586885	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PRPF8-525	NM_006445	exon3	c.C211G	p.R71G	GGTCTCGAATGAT	.	79	5	138	0	.	60	55	5	0	0
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3926086	3926086	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ZZEF1-93	NM_015113	exon44	c.C7129G	p.Q2377E	CGGTCTGAAGGAA	.	40	12	79	0	.	14	7	7	0	0
TRPV2	51393	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	16330054	16330054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TRPV2-91	NM_016113	exon7	c.G1114A	p.V372I	ATGGTCGTTTTGG	.	40	14	110	0	.	3	3	0	0	0
ZNF286B	729288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18565401	18565401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_001145045	exon5	c.G1418A	p.G473E	GCTTTTCCACACT	.	16	5	37	0	.	0	0	0	0	0
ZNF286B	729288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18565413	18565413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_001145045	exon5	c.G1406A	p.C469Y	TCACTACATTTGT	.	14	6	35	1	.	0	0	0	0	0
IKZF3	22806	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	37949078	37949078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	IKZF3-971	NM_012481	exon4	c.G272A	p.R91K	TATTCTCTTGAAT	.	88	12	86	0	.	4	2	2	0	0
HAP1	9001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39887800	39887800	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HAP1-92	NM_001079870	exon6	c.C1038T	p.L346L	AGTGTCGAGTTGA	.	103	66	151	0	.	0	0	0	0	0
UBTF	7343	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42293042	42293042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	UBTF-90	NM_014233	exon5	c.G454A	p.E152K	GAAGCTCCTTGTA	.	120	13	205	0	.	46	41	5	0	0
EFCAB13	124989	ucsc.edu	37	17	45452155	45452155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_152347	exon12	c.G1195A	p.E399K	AAGGGTGAAATTC	.	44	5	39	0	.	0	0	0	0	0
SKAP1	8631	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	46239837	46239837	+	Silent	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SKAP1-90	NM_003726	exon11	c.G972C	p.L324L	CTTGCTCAGAATA	.	70	6	58	0	.	0	0	0	0	0
KIF19	124602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72338804	72338804	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KIF19-90	NM_153209	exon4	c.C267G	p.I89M	CCTCATCGAGGGC	.	81	41	113	0	.	0	0	0	0	0
EIF4A3	9775	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	78120725	78120725	+	Silent	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	EIF4A3-227	NM_014740	exon1	c.G36C	p.S12S	TCGCGCCGAGCCC	.	42	9	55	1	.	59	47	12	0	0
MIB1	57534	broad.mit.edu;bcgsc.ca	37	18	19399507	19399507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MIB1-526	NM_020774	exon12	c.G1729A	p.D577N	CGTGATGATATCC	.	218	13	152	0	.	20	20	0	0	0
HRH4	59340	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	22048831	22048831	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HRH4-92	NM_021624	exon2	c.C273T	p.L91L	TTGGCTCACTACT	.	105	12	66	0	.	0	0	0	0	0
TAF4B	6875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	23866009	23866009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TAF4B-71	NM_005640	exon7	c.C1136T	p.S379L	AAAAGTCAATTAT	.	82	64	146	0	.	2	1	1	0	0
DOK6	220164	hgsc.bcm.edu;broad.mit.edu	37	18	67266711	67266711	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	DOK6-92	NM_152721	exon3	c.C266G	p.S89W	AAACATCGAAGAC	.	25	3	41	0	.	0	0	0	0	0
MED16	10025	hgsc.bcm.edu	37	19	879943	879943	+	Missense_Mutation	SNP	G	G	C	rs76403059		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MED16-186	NM_005481	exon8	c.C1347G	p.H449Q	CTTCCCGTGGCTG	.	25	3	36	1	.	1	1	0	0	0
ATP8B3	148229	ucsc.edu;bcgsc.ca	37	19	1811677	1811677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_138813	exon2	c.C59A	p.P20H	GGGGCAGGGCTTG	.	29	10	36	0	.	0	0	0	0	0
NFIC	4782	ucsc.edu	37	19	3435161	3435161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	NFIC-226	NM_001245004	exon6	c.C914T	p.S305L	CCAGCTCGCCCAC	.	29	4	40	0	.	42	42	0	0	0
TRIP10	9322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	6743264	6743264	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TRIP10-228	NM_004240	exon5	c.G405C	p.E135D	GCTGGAGAATGTG	.	39	4	59	1	.	0	0	0	0	0
NR2F6	2063	broad.mit.edu	37	19	17355929	17355929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	NR2F6-186	NM_005234	exon1	c.C101T	p.S34L	GGGGGCGAGGCCG	.	9	4	9	0	.	0	0	0	0	0
WDR88	126248	hgsc.bcm.edu	37	19	33635808	33635808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	WDR88-154	NM_173479	exon3	c.T446C	p.V149A	CTGTTGTAGAGTG	.	30	2	37	0	.	0	0	0	0	0
NCCRP1	342897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39691364	39691364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	NCCRP1-91	NM_001001414	exon6	c.G796A	p.D266N	GTGACCGACTCCT	.	303	60	385	0	.	553	442	111	0	0
AKT2	208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40741033	40741033	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	AKT2-978	NM_001626	exon13	c.C1285G	p.Q429E	TGACCTGAGGTTT	.	82	38	108	1	.	154	71	83	0	0
C19orf47	126526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40832303	40832303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	C19orf47-92	NM_001256440	exon7	c.A641G	p.N214S	GGCATGTTGATGA	.	55	26	84	0	.	12	7	5	0	0
LYPD3	27076	hgsc.bcm.edu	37	19	43967362	43967362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	LYPD3-91	NM_014400	exon4	c.A460G	p.T154A	GCGATGTACCCTG	.	99	7	110	0	.	834	832	0	1	1
ALDH16A1	126133	ucsc.edu	37	19	49969068	49969068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ALDH16A1-91	NM_153329	exon13	c.C1642T	p.R548W	CCCATCCGGGATT	.	33	4	57	0	.	23	23	0	0	0
KLK10	5655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51518766	51518766	+	Silent	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KLK10-650	NM_145888	exon5	c.C585A	p.I195I	GCTCAGGATAGTG	.	385	66	468	0	.	0	0	0	0	0
ZNF347	84671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53643875	53643875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ZNF347-90	NM_001172675	exon5	c.C2209A	p.P737T	TGTAAGGTTTTTT	.	172	28	232	0	.	5	5	0	0	0
MYADM	91663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54377552	54377552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MYADM-91	NM_138373	exon3	c.C769T	p.L257F	CTTGTTCTCTGGC	.	103	23	146	1	.	4	4	0	0	0
NLRP7	199713	broad.mit.edu	37	19	55450843	55450843	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	NLRP7-291	NM_001127255	exon4	c.C1344T	p.F448F	GTCCAGGAACAGA	.	46	6	93	0	.	2	2	0	0	0
GALP	85569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56694579	56694579	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	GALP-90	NM_033106	exon5	c.G293C	p.G98A	AGATTGGAGGTAA	.	96	32	130	0	.	0	0	0	0	0
USP29	57663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57641187	57641187	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	USP29-661	NM_020903	exon4	c.G1144C	p.D382H	TGTTTAGACCAGC	.	106	42	102	0	.	0	0	0	0	0
CAPN13	92291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	30976059	30976059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CAPN13-136	NM_144575	exon10	c.C947T	p.S316L	TGACACGACATCC	.	102	32	106	2	.	0	0	0	0	0
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32626579	32626579	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	BIRC6-233	NM_016252	exon8	c.C1306T	p.Q436X	GTACAACAGCTTA	.	106	38	111	0	.	7	6	1	0	0
SOS1	6654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	39281894	39281894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SOS1-851	NM_005633	exon5	c.C581T	p.S194F	GAGGTGGAAGGCT	.	166	68	213	0	.	8	5	3	0	0
MDH1	4190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	63826356	63826356	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MDH1-537	NM_001199111	exon5	c.C482G	p.S161X	CCAAGTCAGCTCC	.	93	11	85	1	.	172	170	2	0	0
ACTR2	10097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	65492181	65492181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ACTR2-278	NM_001005386	exon9	c.G901A	p.E301K	AGATCTGAATTCT	.	176	70	169	0	.	0	0	0	0	0
CLEC4F	165530	broad.mit.edu;bcgsc.ca	37	2	71043525	71043525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CLEC4F-95	NM_173535	exon4	c.G988A	p.E330K	GAATTTCATCACC	.	128	10	128	0	.	0	0	0	0	0
SULT1C2	6819	broad.mit.edu;ucsc.edu	37	2	108921890	108921890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SULT1C2-91	NM_176825	exon8	c.G650T	p.R217L	AAATTCGGAAGGT	.	50	5	60	0	.	0	0	0	0	0
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	186678413	186678413	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FSIP2-90	NM_173651	exon18	c.A20236T	p.I6746L	AATTACATAAAAG	.	40	11	41	0	.	0	0	0	0	0
MSTN	2660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	190922196	190922196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MSTN-650	NM_005259	exon3	c.G916A	p.A306T	AATTGGCCTTATA	.	69	34	60	0	.	0	0	0	0	0
ALS2CR12	130540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	202172265	202172265	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ALS2CR12-154	NM_001127391	exon11	c.G856C	p.E286Q	AGTTCTCAAAGAC	.	275	53	265	1	.	0	0	0	0	0
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	241661280	241661280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KIF1A-91	NM_001244008	exon44	c.A4687G	p.T1563A	TGAATGTGTGCGT	.	11	8	32	0	.	2	0	2	0	0
TMEM74B	55321	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	1161561	1161561	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_018354	exon2	c.G702A	p.G234G	CTGGCCCCCATCC	.	99	12	116	0	.	12	6	6	0	0
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	40033767	40033767	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CHD6-238	NM_032221	exon37	c.C7614T	p.L2538L	TGGACTGAGGAGT	.	156	23	170	0	.	19	19	0	0	0
CHD6	84181	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	40050320	40050320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CHD6-238	NM_032221	exon31	c.C4955T	p.S1652L	GACTCTGAAGTCC	.	75	16	68	0	.	7	7	0	0	0
PTPN1	5770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49195155	49195155	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PTPN1-1082	NM_002827	exon6	c.T691G	p.C231G	GATACCTGCCTCT	.	56	18	77	0	.	0	0	0	0	0
HRH3	11255	broad.mit.edu	37	20	60791561	60791561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HRH3-90	NM_007232	exon3	c.C839T	p.A280V	ACGGCCGCCTCAC	.	11	7	8	0	.	0	0	0	0	0
HELZ2	85441	ucsc.edu	37	20	62203597	62203597	+	Missense_Mutation	SNP	T	T	G	rs200635909		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_001037335	exon2	c.A142C	p.T48P	GGCAGGTGACCAA	.	18	3	21	3	.	18	16	2	0	0
DIP2A	23181	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	47978259	47978259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	DIP2A-24	NM_015151	exon32	c.G3922A	p.V1308I	CGCGCCGTAAGCA	.	24	7	21	0	.	12	8	4	0	0
SERPIND1	3053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21140297	21140297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SERPIND1-414	NM_000185	exon4	c.G1169A	p.R390Q	GAACTCGAGAAGT	.	187	20	249	0	.	0	0	0	0	0
SERPIND1	3053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21140328	21140328	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SERPIND1-414	NM_000185	exon4	c.G1200A	p.E400E	GCTGGAGAAGAAC	.	199	24	254	0	.	2	1	1	0	0
SEZ6L	23544	broad.mit.edu	37	22	26702084	26702084	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SEZ6L-95	NM_021115	exon6	c.G1488A	p.E496E	CTTTGAGAGGCTG	.	81	5	84	0	.	0	0	0	0	0
MCM5	4174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	35806777	35806777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MCM5-228	NM_006739	exon7	c.A793G	p.I265V	GTTACCATCATGG	.	176	54	209	0	.	50	24	26	0	0
MYH9	4627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	36696256	36696256	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MYH9-292	NM_002473	exon23	c.G2893C	p.E965Q	CCTTCTCCAGCTG	.	113	50	131	0	.	445	253	192	0	0
HDAC10	83933	hgsc.bcm.edu;broad.mit.edu	37	22	50687534	50687534	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HDAC10-226	NM_032019	exon8	c.G754C	p.E252Q	TCACCTCAAAGGC	.	19	9	19	1	.	2	1	1	0	0
SEMA3F	6405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50220896	50220896	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SEMA3F-279	NM_004186	exon12	c.G1132C	p.D378H	ATGGCTGATATTC	.	71	7	85	0	.	180	157	23	0	0
CCDC80	151887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	112324296	112324296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CCDC80-92	NM_199511	exon8	c.C2821T	p.H941Y	TCTCATGATGACG	.	99	27	100	0	.	0	0	0	0	0
KALRN	8997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	124103778	124103778	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KALRN-738	NM_003947	exon11	c.G1851C	p.K617N	CTACAAGGCAGCT	.	84	38	96	0	.	1	1	0	0	0
KY	339855	ucsc.edu	37	3	134322978	134322978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KY-24	NM_178554	exon11	c.G1429A	p.D477N	GCCCGTCGCTGGT	.	13	4	18	0	.	0	0	0	0	0
TTC14	151613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	180324303	180324303	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TTC14-91	NM_001042601	exon9	c.G1084C	p.E362Q	GCAATAGAAGATT	.	214	119	111	0	.	11	6	5	0	0
CCDC39	339829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	180337752	180337752	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CCDC39-72	NM_181426	exon15	c.C2005G	p.Q669E	TTTCTTGAGCAGC	.	55	9	22	0	.	0	0	0	0	0
MB21D2	151963	broad.mit.edu	37	3	192516239	192516239	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MB21D2-70	NM_178496	exon2	c.C1412G	p.S471C	AAGACAGAGATTG	.	210	5	151	0	.	4	4	0	0	0
PDE6B	5158	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	619524	619524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PDE6B-90	NM_001145291	exon1	c.G109A	p.E37K	GCCTGCGAGGACG	.	62	15	76	0	.	0	0	0	0	0
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1806099	1806099	+	Missense_Mutation	SNP	A	A	G	rs121913485	bycluster	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FGFR3-9542	NM_001163213	exon9	c.A1124G	p.Y375C	GTGTGTATGCAGG	.	201	172	304	1	.	406	0	406	0	0
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1807891	1807891	+	Missense_Mutation	SNP	G	G	C	rs28928868		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FGFR3-9542	NM_001163213	exon14	c.G1956C	p.K652N	CAAGAAGACGACC	.	18	16	50	1	G|1.000	0	0	0	0	0
FGFR3	2261	broad.mit.edu;bcgsc.ca	37	4	1808562	1808562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FGFR3-9542	NM_001163213	exon17	c.G2181A	p.M727I	GTACATGATCATG	.	13	10	22	0	.	1	0	1	0	0
JAKMIP1	152789	broad.mit.edu;ucsc.edu	37	4	6052355	6052355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	JAKMIP1-292	NM_001099433	exon14	c.G1858A	p.E620K	GGTTCTCGGGGAA	.	11	7	12	0	.	0	0	0	0	0
PPARGC1A	10891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	23830149	23830149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PPARGC1A-230	NM_013261	exon5	c.C631A	p.L211I	ATTTGAGAAGCTC	.	198	70	210	1	.	0	0	0	0	0
HOPX	84525	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	57514941	57514941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HOPX-22	NM_032495	exon4	c.C221T	p.A74V	CACTTTGCCAGGC	.	145	61	172	0	.	321	178	143	0	0
PLK4	10733	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	128813651	128813651	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PLK4-333	NM_014264	exon10	c.G2170C	p.E724Q	GATTTTGAGGTTT	.	53	7	94	0	.	4	2	2	0	0
MAP3K1	4214	ucsc.edu	37	5	56155606	56155606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MAP3K1-956	NM_005921	exon3	c.C698T	p.P233L	AGTCTCCAGGAGA	.	35	4	37	0	.	10	10	0	0	0
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	71495628	71495628	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MAP1B-155	NM_005909	exon5	c.C6446G	p.S2149X	CCACCTCAGTCAG	.	73	8	141	1	.	3	3	0	0	0
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79027353	79027353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CMYA5-77	NM_153610	exon2	c.C2765T	p.S922F	ATAGATCTCTAAA	.	94	51	114	0	.	15	4	11	0	0
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79030983	79030983	+	Missense_Mutation	SNP	G	G	C	rs79193094	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CMYA5-77	NM_153610	exon2	c.G6395C	p.R2132T	CACAAAGAAAACC	.	84	38	122	1	G|0.999;A|0.001	24	9	15	0	0
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79031337	79031337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CMYA5-77	NM_153610	exon2	c.G6749A	p.R2250K	AACCCAGAGGTAC	.	140	75	176	0	.	24	11	13	0	0
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79031882	79031882	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CMYA5-77	NM_153610	exon2	c.G7294C	p.E2432Q	AAGAAAGAAATGC	.	58	24	66	0	.	9	3	6	0	0
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79032579	79032579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CMYA5-77	NM_153610	exon2	c.G7991A	p.R2664K	CAAGCAGAGATAT	.	50	25	68	0	.	35	19	16	0	0
MTX3	345778	hgsc.bcm.edu	37	5	79284404	79284404	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_001010891	exon5	c.C385G	p.Q129E	GAATTTGTGAAGC	.	18	2	26	0	.	3	3	0	0	0
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82786054	82786054	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	VCAN-238	NM_004385	exon3	c.G208T	p.E70X	AAGATTGAAGTGG	.	99	23	126	1	.	8	8	0	0	0
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	82817031	82817031	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	VCAN-238	NM_004385	exon7	c.C2906G	p.S969C	TAGACTCTTCCCA	.	105	9	116	0	.	0	0	0	0	0
APBB3	10307	hgsc.bcm.edu	37	5	139940335	139940335	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	APBB3-92	NM_006051	exon10	c.G942C	p.M314I	CACATCCATGCCT	.	25	2	71	0	.	0	0	0	0	0
PCDHGC3	5098	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140856910	140856910	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PCDHGC3-24	NM_032402	exon1	c.G1227A	p.L409L	CACTTTGAAAACC	.	59	14	97	0	.	6	3	3	0	0
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	153078520	153078520	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	GRIA1-96	NM_001258021	exon10	c.G1369C	p.A457P	GAGATTGCCAAGC	.	82	19	135	0	.	0	0	0	0	0
SGCD	6444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156186311	156186311	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_000337	exon9	c.C783T	p.F261F	GGTCTTCGAGATC	.	131	44	171	1	.	0	0	0	0	0
HLA-B	3106	broad.mit.edu	37	6	31324628	31324628	+	Silent	SNP	G	G	A	rs151341114	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HLA-B-90	NM_005514	exon2	c.C180T	p.F60F	GCTGTCGAACCTC	.	12	7	21	0	.	871	164	705	1	0
FOXP4	116113	bcgsc.ca	37	6	41533574	41533574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FOXP4-289	NM_001012427	exon2	c.C76A	p.Q26K	TCTGGGCAAGCCG	.	81	18	170	16	.	6	6	0	0	0
CUL7	9820	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43008726	43008726	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CUL7-229	NM_001168370	exon20	c.C3985T	p.L1329L	GCTGCAGCTGTGC	.	12	4	30	0	.	7	4	3	0	0
CUL9	23113	hgsc.bcm.edu	37	6	43181268	43181268	+	Silent	SNP	T	T	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CUL9-529	NM_015089	exon28	c.T5451C	p.P1817P	TGGCCCTTTGACC	.	43	3	111	0	.	4	4	0	0	0
TJAP1	93643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43468508	43468508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TJAP1-90	NM_080604	exon5	c.G126T	p.M42I	AAGGATGAAGTGA	.	82	59	170	2	.	1	0	1	0	0
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152557320	152557320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SYNE1-607	NM_182961	exon110	c.G20318A	p.G6773E	CACTCTCCAAGTT	.	81	58	159	0	.	2	2	0	0	0
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152560730	152560730	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SYNE1-607	NM_182961	exon108	c.C20005G	p.Q6669E	AAGCCTGAGCCAT	.	61	47	101	0	.	1	0	1	0	0
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152730280	152730280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SYNE1-607	NM_033071	exon44	c.G6484A	p.E2162K	TCAGCTCAGATAA	.	55	45	99	0	.	1	0	1	0	0
MLLT4	4301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	168347543	168347543	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MLLT4-685	NM_001040000	exon26	c.A3494C	p.K1165T	TGATGAAAAATAG	.	77	60	160	0	.	18	0	18	0	0
FRMD1	79981	hgsc.bcm.edu;broad.mit.edu	37	6	168457843	168457843	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FRMD1-91	NM_024919	exon11	c.G1584C	p.K528N	GGACCTCTTGCTG	.	10	8	10	0	.	0	0	0	0	0
SBDS	51119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	66456129	66456129	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SBDS-523	NM_016038	exon4	c.G619C	p.E207Q	CGATTTCTAACTG	.	84	33	65	0	.	0	0	0	0	0
PHTF2	57157	hgsc.bcm.edu;broad.mit.edu	37	7	77539715	77539715	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PHTF2-23	NM_001127359	exon7	c.C663G	p.F221L	TGCTTTCTTTTTA	.	51	7	47	0	.	0	0	0	0	0
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu	37	7	77885410	77885410	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MAGI2-461	NM_012301	exon10	c.G1897C	p.D633H	GAATGTCAAGTAT	.	41	6	34	0	.	0	0	0	0	0
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	94035021	94035021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	COL1A2-521	NM_000089	exon11	c.G523A	p.G175S	CTTCCTGGCTTCA	.	264	56	204	0	.	50	50	0	0	0
TFR2	7036	broad.mit.edu	37	7	100239125	100239125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TFR2-92	NM_003227	exon1	c.G8A	p.R3Q	CAAAGCCGCTCCA	.	40	5	47	0	.	0	0	0	0	0
TAS2R41	259287	broad.mit.edu;bcgsc.ca	37	7	143175820	143175820	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TAS2R41-92	NM_176883	exon1	c.C855T	p.F285F	CATCTTCAGCAAC	.	85	14	95	0	.	0	0	0	0	0
ATG9B	285973	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150720230	150720230	+	Silent	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ATG9B-91	.	.	.	.	GGCAAAGAGAACA	.	349	66	369	0	.	5	5	0	0	0
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu	37	8	10468873	10468873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	RP1L1-139	NM_178857	exon4	c.G2735A	p.S912N	CTGGCACTGCTTC	.	17	5	36	0	.	0	0	0	0	0
PCM1	5108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	17885162	17885162	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PCM1-742	NM_006197	exon39	c.G6066C	p.Q2022H	AGCCCAGAGTATA	.	62	10	63	0	.	22	15	7	0	0
EBF2	64641	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	25890622	25890622	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	EBF2-26	NM_022659	exon6	c.C530G	p.S177W	GGGTCCGATGGAG	.	155	20	144	0	.	0	0	0	0	0
MATN2	4147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	99019720	99019720	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MATN2-24	NM_002380	exon10	c.C1464T	p.C488C	TTACTGCCTGCTG	.	72	30	85	0	.	0	0	0	0	0
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133945814	133945814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TG-145	NM_003235	exon24	c.G4825A	p.E1609K	TGCACAGAGGACG	.	113	12	138	0	.	0	0	0	0	0
BAI1	575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	143603450	143603450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	BAI1-1129	NM_001702	exon20	c.G3149A	p.R1050H	TCATCCGCAAGCG	.	78	30	54	0	.	0	0	0	0	0
FRMPD1	22844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	37729833	37729833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FRMPD1-159	NM_014907	exon8	c.G721A	p.E241K	CACGAAGAGGAAC	.	44	34	102	2	.	0	0	0	0	0
TRPM3	80036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	73151243	73151243	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TRPM3-521	NM_001007471	exon25	c.C4750G	p.P1584A	GCTCTGGATGGCA	.	91	65	189	2	.	0	0	0	0	0
C5	727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	123783919	123783919	+	Silent	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	C5-92	NM_001735	exon11	c.G1170C	p.L390L	TGCATTCAGTGTT	.	61	6	141	0	.	0	0	0	0	0
DDX31	64794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	135545615	135545615	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	DDX31-226	NM_022779	exon1	c.C22G	p.Q8E	GCCTCTGAGAAGC	.	24	17	47	1	.	1	1	0	0	0
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	138594186	138594186	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KCNT1-137	NM_001272003	exon1	c.G82C	p.E28Q	ACCTTCGAGTTTG	.	19	9	61	0	.	0	0	0	0	0
CLIC3	9022	broad.mit.edu;bcgsc.ca	37	9	139890192	139890192	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CLIC3-90	NM_004669	exon2	c.G51C	p.E17D	CACGCTCTCCCCG	.	7	4	17	0	.	91	66	25	0	0
MAOB	4129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	43655117	43655117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MAOB-555	NM_000898	exon7	c.G637A	p.G213R	CAGATCCGCCCAC	.	125	46	138	0	.	4	0	4	0	0
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	44870205	44870205	+	Splice_Site	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KDM6A-2748	NM_021140	exon5	c.385-1G>C	.	TTTACAGAATGCT	.	67	30	60	0	.	0	0	0	0	0
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53641559	53641559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HUWE1-280	NM_031407	exon23	c.G2197A	p.E733K	CTTCCTCTTCCTC	.	337	116	251	1	.	41	4	37	0	0
ERCC6L	54821	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	71426809	71426809	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ERCC6L-93	NM_017669	exon2	c.C1808G	p.S603X	ATTAATGAGTCCT	.	175	12	122	0	.	3	2	1	0	0
PHKA1	5255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	71886083	71886083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PHKA1-134	NM_001172436	exon8	c.C782T	p.S261L	ACCACTGAGAGTA	.	92	48	60	0	.	3	3	0	0	0
GPRASP2	114928	broad.mit.edu;bcgsc.ca	37	X	101971025	101971025	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	GPRASP2-131	NM_138437	exon4	c.G1228C	p.E410Q	GAATCTGAGCCAG	.	176	7	143	0	.	4	4	0	0	0
PGRMC1	10857	broad.mit.edu;bcgsc.ca	37	X	118370497	118370497	+	Silent	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PGRMC1-130	NM_006667	exon1	c.C171T	p.S57S	CGACAGCGACGAC	.	52	9	40	0	.	50	50	0	0	0
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	123202456	123202456	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	STAG2-134	NM_001042749	exon24	c.C2308T	p.Q770X	TTTTGTCAGATAT	.	183	57	122	0	.	4	1	3	0	0
TENM1	10178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	123680889	123680889	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_001163278	exon15	c.A2486T	p.Y829F	CTTATATAACAGT	.	201	112	132	0	.	0	0	0	0	0
BMP8A	353500	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	39991443	39991443	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	BMP8A-90	NM_181809	exon7	c.1182delG	p.M394fs	.	.	171	35	220	0	.	0	0	0	0	0
TMEM48	55706	broad.mit.edu	37	1	54298190	54298192	+	In_Frame_Del	DEL	TTA	TTA	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	TTA	TTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TMEM48-92	NM_018087	exon3	c.251_253del	p.84_85del	AAATACTTATTAT	.	156	5	58	0	.	0	0	0	0	0
TXNIP	10628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	145440057	145440059	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TXNIP-92	NM_006472	exon4	c.491_493del	p.164_165del	.	.	684	383	453	0	.	0	0	0	0	0
MPRIP	23164	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	17046031	17046031	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MPRIP-90	NM_015134	exon8	c.987delC	p.S329fs	.	.	55	16	106	0	.	0	0	0	0	0
KANSL1	284058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	44248974	44248974	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_001193466	exon2	c.536delG	p.G179fs	.	.	277	119	304	0	.	0	0	0	0	0
OXSM	54995	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	25833175	25833175	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	OXSM-132	NM_017897	exon2	c.664delT	p.F222fs	.	.	178	86	176	0	.	0	0	0	0	0
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	44969446	44969447	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KDM6A-2748	NM_021140	exon28	c.4128_4129del	p.1376_1377del	.	.	106	36	79	0	.	0	0	0	0	0
HSPA8	3312	bcgsc.ca	37	11	122929378	122929379	+	In_Frame_Ins	INS	-	-	TACTCT	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HSPA8-654	NM_006597	exon7	c.1484_1485insAGAGTA	p.T495delinsKST	TTTCCCGTACTCT	.	88	6	121	0	.	0	0	0	0	0
CNGA3	1261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	99012521	99012522	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CNGA3-96	NM_001298	exon8	c.888_889insGT	p.N296fs	.	.	92	20	99	0	.	0	0	0	0	0
BRD8	10902	hgsc.bcm.edu;bcgsc.ca	37	5	137505020	137505021	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	BRD8-91	NM_001164326	exon8	c.533_534insC	p.R178fs	.	.	113	27	159	0	.	0	0	0	0	0
PCDH20	64881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	61986466	61986467	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PCDH20		exon2	c.G1765A	p.G589K	GAATTCCTGTGAC	.	121.0	25.0	128.0	0.0	.	0	0	0	0	0