Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
DDI2	84301	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	15956933	15956933	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	DDI2-44	NM_032341	exon3	c.T382G	p.S128A	ACTTCATCTCCTC	.	129	36	116	1	.	0	0	0	0	0
C1orf213	148898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	23696043	23696043	+	RNA	SNP	A	A	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	C1orf213-68	.	.	.	.	AAGCCCAGATATC	.	135	36	99	1	.	0	0	0	0	0
C1orf173	127254	broad.mit.edu	37	1	75038719	75038719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	C1orf173-94	NM_001002912	exon14	c.C2675T	p.A892V	TCAGAAGCTGCTT	.	132	4	94	0	.	0	0	0	0	0
FUBP1	8880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	78414969	78414969	+	Silent	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	FUBP1-227	NM_003902	exon19	c.T1797C	p.A599A	AGTCGGAGCAGGA	.	69	14	64	0	.	26	5	21	0	0
LRRC8C	84230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	90179188	90179188	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	LRRC8C-97	NM_032270	exon3	c.T1059C	p.Y353Y	TGAGTATGTCCGT	.	146	36	142	0	.	0	0	0	0	0
LY9	4063	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	160786562	160786562	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	LY9-91	NM_001261456	exon5	c.A1251C	p.R417S	ATGGAGAAGCAGT	.	233	59	246	1	.	1	1	0	0	0
SLC19A2	10560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169446750	169446750	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SLC19A2-90	NM_006996	exon2	c.C450T	p.D150D	GCCCAGGTCCACC	.	176	52	179	0	.	0	0	0	0	0
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	181701628	181701628	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CACNA1E-95	NM_001205293	exon20	c.G2406A	p.A802A	GGAGGCGCCGACC	.	380	44	328	0	.	0	0	0	0	0
ADCK3	56997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	227172964	227172964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ADCK3-361	NM_020247	exon14	c.G1582A	p.A528T	ATCAGGGCTGCTG	.	62	17	62	0	.	0	0	0	0	0
FMN2	56776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	240370577	240370577	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	FMN2-145	NM_020066	exon5	c.A2465T	p.Q822L	CTGGGCAAGGACA	.	121	32	128	0	.	0	0	0	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CSGALNACT2-69	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT	.	173	6	166	0	.	3	3	0	0	0
NOLC1	9221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	103917872	103917872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	NOLC1-91	NM_004741	exon5	c.G508A	p.D170N	GATTCTGATTCTG	.	193	35	162	0	.	6	4	2	0	0
MUC2	4583	bcgsc.ca	37	11	1093346	1093346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	MUC2-90	NM_002457	exon30	c.C5165T	p.T1722I	CCCCGACACCCAT	.	298	15	191	4	.	0	0	0	0	0
CNGA4	1262	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6261868	6261868	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CNGA4-91	NM_001037329	exon4	c.G844C	p.D282H	TACCCAGATCATG	.	292	49	187	0	.	0	0	0	0	0
OR2AG2	338755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6789370	6789370	+	Silent	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	OR2AG2-71	NM_001004490	exon1	c.C819A	p.I273I	AGAGATGATGTTG	.	456	86	332	0	.	0	0	0	0	0
RBM14	10432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66384484	66384484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	RBM14-92	NM_001198837	exon1	c.T293C	p.L98P	GCAGCCTCTTCGA	.	67	8	63	0	.	3	2	1	0	0
FGF3	2248	broad.mit.edu;bcgsc.ca	37	11	69625251	69625251	+	Missense_Mutation	SNP	C	C	T	rs148203315		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	FGF3-847	NM_005247	exon3	c.G542A	p.R181H	AGCACGCGGGGCA	.	110	6	71	1	C|1.000;T|0.000	0	0	0	0	0
AQP11	282679	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	77301546	77301546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	AQP11-90	NM_173039	exon1	c.A509G	p.E170G	TCACAGAGGCCGT	.	197	39	155	1	.	1	0	1	0	0
KIAA1377	57562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	101832493	101832493	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	KIAA1377-136	NM_020802	exon6	c.C727G	p.Q243E	GTTAATCAGATAA	.	73	14	57	0	.	0	0	0	0	0
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	2763057	2763057	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CACNA1C-34	NM_199460	exon35	c.C4275T	p.I1425I	GGTGATCGGGATG	.	109	27	69	0	.	0	0	0	0	0
A2M	2	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	9242617	9242617	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	A2M-515	NM_000014	exon21	c.A2599T	p.N867Y	TCACATTTCCTGA	.	171	35	144	0	.	0	0	0	0	0
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	71002988	71002988	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PTPRB-226	NM_001109754	exon4	c.C840T	p.T280T	CCCCAGGGTGTCA	.	372	77	275	0	.	0	0	0	0	0
HIP1R	9026	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	123342922	123342922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	HIP1R-91	NM_003959	exon20	c.G1990A	p.A664T	CAGGAGGCCTTGG	.	259	60	198	1	.	5	2	3	0	0
PGAM5	192111	hgsc.bcm.edu;bcgsc.ca	37	12	133294130	133294130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PGAM5-90	NM_138575	exon3	c.T476C	p.I159T	CCGATATCATCAG	.	43	4	29	0	.	8	8	0	0	0
MTRF1	9617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	41791352	41791352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	MTRF1-90	NM_004294	exon10	c.G1237A	p.G413S	TCCCACCACATAA	.	181	38	131	0	.	0	0	0	0	0
BCL2L2-PABPN1	100529063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23776985	23776985	+	Silent	SNP	C	C	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	.	NM_001199864	exon3	c.C9A	p.T3T	GGCGACCCCAGCC	.	83	26	80	0	.	1	1	0	0	0
GOLGA6L1	283767	broad.mit.edu	37	15	22743221	22743221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	.	NM_001001413	exon8	c.G1606A	p.E536K	GAGCAGGAGGAGA	.	68	4	54	0	.	0	0	0	0	0
MAP1A	4130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43817788	43817788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	MAP1A-141	NM_002373	exon4	c.A4117G	p.T1373A	GACAAAACTCTGG	.	171	52	151	0	.	1	0	1	0	0
DNM1P46	196968	bcgsc.ca	37	15	100340002	100340002	+	RNA	SNP	C	C	T	rs200405906		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	.	.	.	.	.	CGTTCCCACGCGA	.	16	7	22	0	C|0.992;G|0.004;T|0.004	6	6	0	0	0
CCP110	9738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	19548820	19548820	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CCP110-90	NM_001199022	exon4	c.A1829T	p.E610V	TAACTGAACAAGA	.	235	40	184	0	.	0	0	0	0	0
CCP110	9738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	19548822	19548822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CCP110-90	NM_001199022	exon4	c.C1831A	p.Q611K	ACTGAACAAGAAA	.	234	40	181	0	.	0	0	0	0	0
PRR14	78994	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	30666137	30666137	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PRR14-90	NM_024031	exon8	c.G846A	p.L282L	GAAGCTGGAGTTG	.	37	6	37	0	.	16	9	7	0	0
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	31374006	31374006	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ITGAX-229	NM_000887	exon12	c.G1291C	p.G431R	CACACCGGGAAGG	.	523	116	371	0	.	10	9	1	0	0
ALOX12B	242	ucsc.edu;bcgsc.ca	37	17	7990699	7990699	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ALOX12B-226	NM_001139	exon1	c.C62G	p.S21C	GAGATGGAGTCCC	.	389	82	329	2	.	0	0	0	0	0
KRTAP1-1	81851	broad.mit.edu	37	17	39197393	39197393	+	Missense_Mutation	SNP	T	T	C	rs201732142		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	.	NM_030967	exon1	c.A257G	p.Y86C	GTCTGGTAGCAGC	.	126	8	83	1	.	0	0	0	0	0
AOC3	8639	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	41004649	41004649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	AOC3-516	NM_003734	exon1	c.G1289A	p.C430Y	CCTTTTGTGTGTT	.	489	78	397	1	.	0	0	0	0	0
PPM1E	22843	hgsc.bcm.edu	37	17	56833490	56833490	+	Silent	SNP	G	G	A	rs59676153		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PPM1E-291	NM_014906	exon1	c.G132A	p.E44E	ACCCGAGTCCGAG	.	97	9	65	0	.	0	0	0	0	0
CLTC	1213	ucsc.edu	37	17	57746160	57746160	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CLTC-835	NM_004859	exon14	c.C2151T	p.S717S	GGGATCCATTGTT	.	28	4	39	0	.	9	9	0	0	0
KCNH6	81033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61616010	61616010	+	Silent	SNP	C	C	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	KCNH6-91	NM_030779	exon8	c.C1941G	p.V647V	CGTGGTCGTGGCC	.	331	67	264	2	.	0	0	0	0	0
ZNF236	7776	hgsc.bcm.edu;bcgsc.ca	37	18	74680294	74680294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ZNF236-94	NM_007345	exon31	c.G5537T	p.X1846L	TCTTCTGATGCGA	.	72	4	56	0	.	0	0	0	0	0
DOT1L	84444	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	2210830	2210830	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	DOT1L-132	NM_032482	exon14	c.C1327T	p.Q443X	GTGTCTCAGACGG	.	151	35	98	0	.	0	0	0	0	0
TSPAN16	26526	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11408999	11408999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	TSPAN16-91	NM_012466	exon2	c.G251A	p.R84K	AGAGCAGAGGCAC	.	218	44	178	1	.	0	0	0	0	0
ZNF653	115950	broad.mit.edu	37	19	11594521	11594521	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ZNF653-90	NM_138783	exon9	c.C1824T	p.S608S	CGGGTGGCTTTTG	.	162	7	97	1	.	9	8	1	0	0
HAPLN4	404037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19371725	19371725	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	HAPLN4-91	NM_023002	exon3	c.C381T	p.S127S	GACCAGGGAGGCA	.	50	12	64	0	.	0	0	0	0	0
GRAMD1A	57655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35500151	35500151	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	GRAMD1A-90	NM_020895	exon2	c.A137C	p.D46A	GATCAGATAGCTC	.	138	22	72	0	.	5	2	3	0	0
DHX34	9704	ucsc.edu;bcgsc.ca	37	19	47858386	47858386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	DHX34-231	NM_014681	exon3	c.C796T	p.R266W	ATCCAGCGGGAAC	.	281	54	194	2	.	2	2	0	0	0
ZNF418	147686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58438722	58438722	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ZNF418-90	NM_133460	exon4	c.A827T	p.H276L	CGCTGATGCTGAA	.	172	34	142	0	.	0	0	0	0	0
KIDINS220	57498	broad.mit.edu	37	2	8919107	8919107	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	KIDINS220-93	NM_020738	exon19	c.A2533T	p.N845Y	GACTATTAAGGAA	.	115	3	96	0	.	1	1	0	0	0
VWA3B	200403	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	98907042	98907042	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	VWA3B-139	NM_144992	exon23	c.G3114A	p.Q1038Q	AGGACAGAAGGTT	.	353	59	324	1	.	0	0	0	0	0
NEB	4703	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152426612	152426612	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	NEB-145	NM_001271208	exon109	c.T17413A	p.Y5805N	GTTCGTAGGCCTT	.	148	32	126	1	.	0	0	0	0	0
CCDC141	285025	broad.mit.edu	37	2	179701995	179701995	+	Silent	SNP	A	A	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CCDC141-78	NM_173648	exon23	c.T3951A	p.A1317A	ATGTTCAGCACTG	.	228	4	190	0	.	0	0	0	0	0
PLCL1	5334	ucsc.edu;bcgsc.ca	37	2	198949559	198949559	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PLCL1-228	NM_006226	exon2	c.C1318G	p.R440G	GGCTGTCGAAGCG	.	282	62	238	3	.	0	0	0	0	0
CPS1	1373	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	211471605	211471605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CPS1-162	NM_001122633	exon19	c.G2150T	p.C717F	AATACTGCATCAT	.	276	51	214	1	.	2	2	0	0	0
IKZF2	22807	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	213872649	213872649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	IKZF2-226	NM_016260	exon8	c.A1016G	p.H339R	GGCGGGTGCTGCA	.	221	40	173	1	.	0	0	0	0	0
EIF4E2	9470	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233428989	233428989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	EIF4E2-90	NM_004846	exon4	c.G303T	p.M101I	CCACATGGTACGT	.	256	49	178	1	.	28	12	16	0	0
KIF16B	55614	broad.mit.edu	37	20	16359622	16359622	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	KIF16B-291	NM_001199865	exon19	c.C3025T	p.L1009L	TGGCCAGGGCCCG	.	132	4	97	1	.	3	3	0	0	0
CST9L	128821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	23546696	23546696	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CST9L-90	NM_080610	exon2	c.A269C	p.E90A	AGTAGCTCCATTG	.	338	67	244	0	.	0	0	0	0	0
SLC32A1	140679	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	37356957	37356957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SLC32A1-90	NM_080552	exon2	c.T1253C	p.F418S	CCTTTTTCCCGGC	.	92	25	60	1	.	0	0	0	0	0
DHX35	60625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	37653978	37653978	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	DHX35-226	NM_021931	exon18	c.C1777T	p.Q593X	AAGTTTCAAGTGC	.	222	42	186	0	.	2	1	1	0	0
SLC9A8	23315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	48431566	48431566	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SLC9A8-91	NM_001260491	exon2	c.T48C	p.H16H	AACTCATGAGGGT	.	184	45	127	0	.	2	2	0	0	0
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	26422672	26422672	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	MYO18B-142	NM_032608	exon43	c.C6732T	p.P2244P	GCTGCCCAGTCCT	.	159	30	128	0	.	0	0	0	0	0
NEFH	4744	bcgsc.ca	37	22	29885429	29885429	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	NEFH-90	NM_021076	exon4	c.T1800C	p.S600S	CAAGTCTCCAGAG	.	293	32	221	2	.	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885562	29885562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	NEFH-90	NM_021076	exon4	c.G1933A	p.E645K	AAGGAGGAAGCAA	.	335	34	282	0	.	1	1	0	0	0
BAIAP2L2	80115	hgsc.bcm.edu	37	22	38483172	38483172	+	Silent	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	BAIAP2L2-91	NM_025045	exon11	c.C1218A	p.S406S	CATGGGGGACATG	.	146	17	103	0	.	17	17	0	0	0
GRAP2	9402	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	40367067	40367067	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	GRAP2-227	NM_004810	exon8	c.C972T	p.Y324Y	CAACTACGTGGCA	.	112	30	104	1	.	2	2	0	0	0
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	51159826	51159826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SHANK3-69	NM_033517	exon21	c.G3523A	p.E1175K	TCACCCGAGGACA	.	213	39	177	0	.	0	0	0	0	0
TMEM43	79188	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	14183165	14183165	+	Missense_Mutation	SNP	C	C	T	rs63750743	bycluster	TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	TMEM43-91	NM_024334	exon12	c.C1073T	p.S358L	CCACCTCGCTGAC	.	155	14	135	0	.	34	25	9	0	0
SMARCC1	6599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47718172	47718172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SMARCC1-228	NM_003074	exon17	c.G1672T	p.V558L	CTAATACATTAAA	.	131	19	112	0	.	1	0	1	0	0
COL7A1	1294	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48604393	48604393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	COL7A1-160	NM_000094	exon110	c.G8173T	p.G2725W	GTGGCCCTGGGGG	.	79	15	87	1	.	6	3	3	0	0
APEH	327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49718019	49718019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	APEH-91	NM_001640	exon14	c.T1256C	p.L419P	AGGACCTCATGGT	.	269	67	175	0	.	84	48	36	0	0
SLC15A2	6565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121649781	121649781	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SLC15A2-91	NM_021082	exon18	c.A1648G	p.T550A	TATAGAACTGTGC	.	199	31	157	0	.	3	3	0	0	0
HEG1	57493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	124748131	124748131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	HEG1-70	NM_020733	exon2	c.G518A	p.S173N	GAGCCGCTCCTTC	.	241	56	195	0	.	0	0	0	0	0
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130095526	130095526	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	.	NM_153264	exon3	c.G514T	p.A172S	CAGAAAGCTTCTG	.	155	20	108	0	.	0	0	0	0	0
TBL1XR1	79718	broad.mit.edu;bcgsc.ca	37	3	176771657	176771657	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	TBL1XR1-187	NM_024665	exon4	c.G108C	p.Q36H	ATTGGACTGACTG	.	158	6	122	0	.	1	1	0	0	0
KLHL24	54800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183381404	183381404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	KLHL24-91	NM_017644	exon4	c.C1079A	p.A360D	TCTGTGCTCTAAG	.	107	11	84	0	.	4	4	0	0	0
USO1	8615	broad.mit.edu	37	4	76726384	76726384	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	USO1-25	.	.	.	.	AGAGATAGAAGAA	.	307	6	264	0	.	11	11	0	0	0
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	85716095	85716095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	WDFY3-93	NM_014991	exon20	c.C3205A	p.P1069T	TTGTAGGAGCATT	.	404	105	357	0	.	0	0	0	0	0
STPG2	285555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	98893529	98893529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	.	NM_174952	exon7	c.A835G	p.K279E	GTTTCTTTGAGCA	.	220	41	248	0	.	0	0	0	0	0
PDE5A	8654	ucsc.edu;bcgsc.ca	37	4	120528177	120528177	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PDE5A-90	NM_001083	exon2	c.A428T	p.H143L	TCATCATGATCAA	.	194	20	193	2	.	0	0	0	0	0
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	149356416	149356416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	NR3C2-154	NM_001166104	exon2	c.A1597G	p.I533V	AAGATATTGTACC	.	216	54	200	0	.	2	2	0	0	0
NAF1	92345	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	164061509	164061509	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	NAF1-70	NM_138386	exon5	c.A744G	p.A248A	TGGATGTGCAACA	.	45	7	49	1	.	5	5	0	0	0
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	37121780	37121780	+	Silent	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	C5orf42-94	NM_023073	exon48	c.T8962C	p.L2988L	TAGGCAATGGTTT	.	701	235	445	1	.	7	3	4	0	0
ADAMTS6	11174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	64587271	64587271	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ADAMTS6-226	NM_197941	exon11	c.A1397T	p.N466I	GGCTCATTATCAA	.	326	50	171	0	.	0	0	0	0	0
UTP15	84135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	72864379	72864379	+	Silent	SNP	T	T	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	UTP15-90	NM_032175	exon4	c.T318A	p.L106L	TCAACTTTTTGAT	.	187	33	115	0	.	4	4	0	0	0
ARSI	340075	bcgsc.ca	37	5	149678111	149678111	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ARSI-92	NM_001012301	exon2	c.C376G	p.L126V	GGTCCAGGGGCAG	.	301	9	190	0	.	0	0	0	0	0
MRPL22	29093	broad.mit.edu	37	5	154346429	154346429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	MRPL22-90	NM_014180	exon7	c.G593A	p.R198H	AGCTTCGCAGCCG	.	129	5	109	0	.	46	46	0	0	0
SCUBE3	222663	hgsc.bcm.edu	37	6	35182249	35182249	+	Silent	SNP	C	C	T	rs113302940		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SCUBE3-91	NM_152753	exon1	c.C54T	p.A18A	CCACGCCCGCGCC	.	6	6	2	0	C|0.992;T|0.008	0	0	0	0	0
DEFB113	245927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	49936558	49936558	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	DEFB113-90	NM_001037729	exon2	c.A81G	p.E27E	TGCAACTTCTCTT	.	85	15	57	0	.	0	0	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	51750667	51750667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PKHD1-603	NM_170724	exon45	c.C7213A	p.Q2405K	TTACCTGGGCACC	.	130	29	136	0	.	0	0	0	0	0
COL9A1	1297	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	70926682	70926682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	COL9A1-94	NM_001851	exon38	c.C2684A	p.P895H	AGCCCAGGAGGTC	.	176	44	122	1	.	0	0	0	0	0
ALDH8A1	64577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	135260502	135260502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ALDH8A1-94	NM_022568	exon4	c.T494C	p.I165T	GGAGCTATCTTCC	.	128	17	106	0	.	8	6	2	0	0
SCAF8	22828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	155154048	155154048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SCAF8-91	NM_014892	exon20	c.G3335A	p.G1112D	ATGGTGGTCCAAA	.	216	40	199	0	.	5	4	1	0	0
LPA	4018	hgsc.bcm.edu;bcgsc.ca	37	6	161071523	161071523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	LPA-74	NM_005577	exon3	c.C56A	p.P19H	TGCTCAGGTGCTG	.	109	16	95	0	.	0	0	0	0	0
SEPT7	989	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	35923576	35923576	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	.	NM_001011553	exon8	c.T796A	p.Y266N	AGGCAGTATCCTT	.	166	32	119	1	.	40	22	18	0	0
AUTS2	26053	broad.mit.edu	37	7	70255120	70255120	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	AUTS2-92	NM_015570	exon19	c.A2918T	p.N973I	ACGAGAACCCCAA	.	62	5	61	0	.	0	0	0	0	0
AKAP9	10142	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	91631221	91631221	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	AKAP9-755	NM_005751	exon8	c.A1990T	p.K664X	CACTATAAACAGC	.	53	6	57	0	.	0	0	0	0	0
METTL2B	55798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	128119287	128119287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	METTL2B-23	NM_018396	exon3	c.G278T	p.R93I	AGGATAGACATTG	.	481	67	390	0	.	8	8	0	0	0
TAS2R39	259285	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	142880641	142880641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	TAS2R39-1	NM_176881	exon1	c.G130A	p.E44K	CTTGCTGAATACC	.	188	13	106	0	.	0	0	0	0	0
KRBA1	84626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149430813	149430813	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	KRBA1-91	.	.	.	.	GAACCTCCTGGGC	.	50	10	48	0	.	5	3	2	0	0
REPIN1	29803	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	150069172	150069172	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	REPIN1-69	NM_001099695	exon3	c.C1013A	p.S338X	TGACTTCGCACCG	.	52	9	35	0	.	6	4	2	0	0
DLGAP2	9228	broad.mit.edu	37	8	1513950	1513950	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	DLGAP2-22	NM_004745	exon3	c.C1092T	p.D364D	GGGGGACGAGGAG	.	199	6	136	0	.	0	0	0	0	0
MTUS1	57509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	17612803	17612803	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	MTUS1-92	NM_001001924	exon2	c.T514C	p.F172L	ATATAAAGGTGCA	.	224	34	191	0	.	1	1	0	0	0
KAT6A	7994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	41794945	41794945	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	.	NM_001099412	exon17	c.T3181A	p.L1061I	GTTCTAATCTTGG	.	281	58	215	0	.	0	0	0	0	0
WWP1	11059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	87423961	87423961	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	WWP1-659	NM_007013	exon9	c.G919C	p.A307P	TCTGAAGCTAGAA	.	111	18	109	0	.	5	4	1	0	0
EIF3H	8667	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	117661151	117661151	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	EIF3H-658	NM_003756	exon6	c.A722C	p.K241T	AGATTCTTCCCCA	.	147	36	106	1	.	219	136	83	0	0
PLIN2	123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	19126158	19126158	+	Silent	SNP	C	C	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PLIN2-92	NM_001122	exon3	c.G180T	p.V60V	CATGGCCACGGAG	.	263	49	207	0	.	53	21	31	0	1
AGTPBP1	23287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	88233969	88233969	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	AGTPBP1-158	NM_015239	exon17	c.G2144C	p.G715A	CGCATTCCACTGA	.	130	27	136	0	.	3	3	0	0	0
ASS1	445	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	133342187	133342187	+	Splice_Site	SNP	G	G	C	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ASS1-91	NM_000050	exon7	c.495+1G>C	.	GCAAAGGTATGGC	.	226	30	171	1	.	0	0	0	0	0
PHPT1	29085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139744582	139744582	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PHPT1-90	NM_001135861	exon2	c.A278G	p.Y93C	ACGGCTATTCCAT	.	179	30	120	0	.	7	1	6	0	0
BMP15	9210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	50658965	50658965	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	BMP15-132	NM_005448	exon2	c.C537T	p.N179N	GTCTAACGCTTGG	.	217	78	184	0	.	0	0	0	0	0
ZCCHC5	203430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	77913359	77913359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ZCCHC5-131	NM_152694	exon2	c.C559T	p.P187S	GGGGAGGTGGAAG	.	47	18	15	0	.	0	0	0	0	0
SRPX2	27286	broad.mit.edu	37	X	99919925	99919925	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SRPX2-132	NM_014467	exon5	c.T510G	p.S170R	ATGGAGTGGAGGC	.	124	9	121	7	.	2	2	0	0	0
RBMXL1	494115	broad.mit.edu	37	1	89449426	89449426	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	.	NM_019610	exon2	c.84delT	p.F28fs	TTTGCCAAATACT	.	504	53	525	0	.	0	0	0	0	0
IQGAP3	128239	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	156517916	156517917	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	IQGAP3-96	NM_178229	exon19	c.2252_2253del	p.751_751del	.	.	131	33	101	0	.	0	0	0	0	0
DNHD1	144132	broad.mit.edu	37	11	6561201	6561201	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	DNHD1-24	NM_144666	exon18	c.3516delC	p.F1172fs	CAACTTCATCCTG	.	220	19	171	0	.	0	0	0	0	0
OR8B2	26595	bcgsc.ca	37	11	124252684	124252692	+	In_Frame_Del	DEL	GGAGGAGGG	GGAGGAGGG	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	GGAGGAGGG	GGAGGAGGG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	OR8B2-68	NM_001005468	exon1	c.548_556del	p.183_186del	AAAGCTGGAGGAG	.	1060	38	871	1	.	0	0	0	0	0
SAV1	60485	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	51132105	51132106	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SAV1-658	NM_021818	exon2	c.326_327del	p.109_109del	.	.	757	161	725	0	.	0	0	0	0	0
GHDC	84514	broad.mit.edu;bcgsc.ca	37	17	40344519	40344519	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	GHDC-90	NM_001142623	exon5	c.629delT	p.F210fs	CCCAAGAAAACAT	.	194	19	132	0	.	0	0	0	0	0
RNF213	57674	broad.mit.edu;bcgsc.ca	37	17	78350139	78350141	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	RNF213-577	NM_001256071	exon52	c.13224_13226del	p.4408_4409del	ATGCAAGATCCTT	.	254	32	159	0	.	0	0	0	0	0
CACNA1D	776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	53844325	53844325	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CACNA1D-100	NM_000720	exon48	c.6252delA	p.A2084fs	.	.	472	86	376	0	.	0	0	0	0	0
YEATS2	55689	broad.mit.edu;bcgsc.ca	37	3	183476664	183476664	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	YEATS2-138	NM_018023	exon13	c.1567delA	p.K523fs	ACAAACAAGATCT	.	388	55	343	0	.	0	0	0	0	0
CNGA1	1259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	47938977	47938977	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CNGA1-92	NM_001142564	exon10	c.1741delA	p.I581fs	.	.	176	29	189	0	.	0	0	0	0	0
NPTX2	4885	bcgsc.ca	37	7	98257767	98257767	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	NPTX2-515	NM_002523	exon5	c.1122delC	p.S374fs	GCTCAGCCAGTTC	.	246	43	168	1	.	0	0	0	0	0
ADARB2	105	broad.mit.edu	37	10	1405639	1405640	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ADARB2-153	NM_018702	exon3	c.661_662insC	p.D221fs	GCGTGTCGGGGAA	.	6	2	5	0	.	0	0	0	0	0
MAML2	84441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	95712439	95712440	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	MAML2-850	NM_032427	exon5	c.3144_3145insA	p.N1048fs	.	.	214	49	154	0	.	0	0	0	0	0
MMD	23531	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	53485137	53485138	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	MMD-90	NM_012329	exon4	c.314_315insCT	p.Y105fs	.	.	115	31	114	0	.	0	0	0	0	0
CGB	1082	broad.mit.edu	37	19	49526376	49526377	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CGB-22	NM_000737	exon3	c.265_266insA	p.L89fs	CAGGGAGCCGGAT	.	10	2	18	0	.	0	0	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885622	29885623	+	In_Frame_Ins	INS	-	-	AGGAAG	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	NEFH-90	NM_021076	exon4	c.1993_1994insAGGAAG	p.K665delinsKEE	CCTGAGAAGGCCA	.	595	9	472	0	.	0	0	0	0	0
CCDC112	153733	broad.mit.edu;bcgsc.ca	37	5	114603580	114603581	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CCDC112-90	NM_001040440	exon10	c.1583_1584insAA	p.R528fs	CATACTCTTCTCT	.	238	31	238	0	.	0	0	0	0	0
ABCB6	10058	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220075010	220075011	+	Missense_Mutation	DNP	CA	CA	AG	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ABCB6-153	NM_005689	exon18	c.T2361C	p.V788L	GACCACAGTTGAG	.	178	28	121	1	.	0	0	0	0	0
SMC1B	27127	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	45785629	45785630	+	Missense_Mutation	DNP	GC	GC	CT	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SMC1B-229	NM_148674	exon10	c.G1693A	p.A565S	GTTCAGCTCTTTC	.	169	36	155	1	.	0	0	0	0	0