Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PRAMEF12	390999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	12837407	12837407	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	PRAMEF12-25	NM_001080830	exon3	c.A1117T	p.S373C	GCCCTGAGCCGCT	.	737	215	505	0	.	0	0	0	0	0
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	16257911	16257911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	SPEN-298	NM_015001	exon11	c.G5176A	p.D1726N	TCAGGTGACCAGC	.	152	16	149	0	.	6	5	1	0	0
TAL1	6886	broad.mit.edu	37	1	47685614	47685614	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TAL1-1082	NM_003189	exon4	c.G774C	p.K258N	AGGGTCCTTGCCA	.	58	16	48	0	.	0	0	0	0	0
ABCA4	24	broad.mit.edu	37	1	94486858	94486858	+	Silent	SNP	A	A	G	rs61750561	alternate_allele	TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ABCA4-162	NM_000350	exon35	c.T4956C	p.Y1652Y	GATTCCATACTCC	.	214	6	172	0	.	0	0	0	0	0
NBPF16	728936	broad.mit.edu;bcgsc.ca	37	1	148594427	148594427	+	Missense_Mutation	SNP	G	G	C	rs150964009	alternate_allele	TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	.	NM_001102663	exon16	c.G1800C	p.E600D	GGAAGAGCCTGAA	.	550	104	485	1	G|1.000;A|0.000	33	27	6	0	0
CADM3	57863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	159170698	159170698	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	CADM3-92	NM_021189	exon10	c.G1285T	p.E429X	AAGAAGGAATATT	.	239	25	183	0	.	0	0	0	0	0
MROH9	80133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	170965712	170965712	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	.	NM_025063	exon14	c.C1402G	p.L468V	ATTACTCTAATGA	.	138	32	128	0	.	0	0	0	0	0
EPHX1	2052	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	226030105	226030105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	EPHX1-281	NM_001136018	exon7	c.T970C	p.Y324H	GCTGCCTATATTC	.	132	33	104	1	.	73	52	21	0	0
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	235872510	235872510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	LYST-143	NM_000081	exon44	c.C10024T	p.R3342W	CCTGCCGATGGAT	.	291	82	275	0	.	1	1	0	0	0
ACBD5	91452	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	27529275	27529275	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ACBD5-90	NM_145698	exon2	c.A154C	p.K52Q	TCACCTTCACGGC	.	136	39	127	0	.	4	2	2	0	0
ATRNL1	26033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	117075179	117075179	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ATRNL1-96	NM_207303	exon18	c.G2970A	p.E990E	CAGTGAGATGGTT	.	152	41	136	1	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1264092	1264092	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	.	NM_002458	exon31	c.C5982T	p.R1994R	GACCCGCCTATCA	.	1304	383	785	0	.	0	0	0	0	0
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	19890497	19890497	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	NAV2-96	NM_145117	exon4	c.T465A	p.N155K	CTTGAATTTCCTG	.	53	16	59	0	.	2	1	1	0	0
GAS2	2620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	22759307	22759307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	GAS2-652	NM_177553	exon5	c.G466A	p.A156T	CGGATTGCAGCCA	.	210	60	143	0	.	0	0	0	0	0
PAMR1	25891	broad.mit.edu;bcgsc.ca	37	11	35492269	35492269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	PAMR1-70	NM_001001991	exon5	c.G592T	p.V198F	CACAGACACGCTT	.	264	16	195	1	.	0	0	0	0	0
SLC43A3	29015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57182446	57182446	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	SLC43A3-90	NM_017611	exon10	c.C903G	p.N301K	CAAGGAGTTGAGA	.	69	21	55	0	.	4	4	0	0	0
PDE2A	5138	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	72292965	72292965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	PDE2A-156	NM_002599	exon22	c.G1878A	p.M626I	GAAATTCATGTCC	.	112	37	88	1	.	0	0	0	0	0
MYO7A	4647	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	76891503	76891503	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	MYO7A-138	NM_001127179	exon22	c.G2670A	p.K890K	GGCCAAGGAGGAG	.	112	34	56	1	.	2	2	0	0	0
KBTBD3	143879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	105925034	105925034	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	KBTBD3-91	NM_152433	exon3	c.T382A	p.L128M	ATGACAACTGGAA	.	107	34	95	0	.	1	1	0	0	0
ESAM	90952	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	124623587	124623587	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ESAM-90	NM_138961	exon7	c.G1128A	p.V376V	CACAGGCACAGCA	.	84	7	55	0	.	19	19	0	0	0
NTM	50863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	132180102	132180102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	NTM-95	NM_001144059	exon5	c.T758C	p.F253S	CAGAATTCCAGTG	.	307	91	229	0	.	0	0	0	0	0
AQP2	359	broad.mit.edu	37	12	50344816	50344816	+	Missense_Mutation	SNP	A	A	C	rs104894331		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	AQP2-92	NM_000486	exon1	c.A203C	p.N68T	ACATCAACCCTGC	.	148	25	48	9	A|0.998;C|0.002	0	0	0	0	0
LRP1	4035	broad.mit.edu	37	12	57566959	57566959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	LRP1-596	NM_002332	exon21	c.C3172A	p.P1058T	ACGAGGCCCCCTG	.	103	6	51	1	.	0	0	0	0	0
TCHP	84260	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	110341898	110341898	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TCHP-91	NM_001143852	exon3	c.A345T	p.R115S	AAGAAGAATCCGG	.	146	28	79	1	.	5	3	2	0	0
EXOSC8	11340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	37583387	37583387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	EXOSC8-91	NM_181503	exon11	c.A782G	p.E261G	ACAAAGAAGTTAA	.	138	29	146	0	.	11	5	6	0	0
VWA8	23078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	42293875	42293875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	.	NM_015058	exon26	c.T2968C	p.F990L	TCGGAAATTTCTG	.	62	30	62	0	.	0	0	0	0	0
TIMM9	26520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	58878635	58878635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TIMM9-90	NM_012460	exon4	c.A29G	p.Q10R	TTTATCTGATCAG	.	75	35	121	0	.	0	0	0	0	0
PLEKHD1	400224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	69994009	69994009	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	PLEKHD1-68	NM_001161498	exon11	c.G1161A	p.E387E	TAAGGAGAAGGAG	.	174	52	158	0	.	0	0	0	0	0
WDR72	256764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	53815462	53815462	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	WDR72-92	NM_182758	exon19	c.T3206C	p.V1069A	TCCTCCACGTCTT	.	70	14	57	0	.	9	1	8	0	0
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	63097959	63097959	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TLN2-573	NM_015059	exon48	c.T6638A	p.V2213E	AAGCCGTGTCAGA	.	196	56	154	0	.	5	1	4	0	0
MEGF11	84465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	66190397	66190397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	MEGF11-69	NM_032445	exon23	c.C3010T	p.H1004Y	AGTTATGACCGCA	.	139	34	142	0	.	0	0	0	0	0
DNAH3	55567	bcgsc.ca	37	16	20976403	20976403	+	Missense_Mutation	SNP	G	G	A	rs143399673		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	DNAH3-167	NM_017539	exon53	c.C8803T	p.R2935W	GGAGCCGATCTAC	.	159	74	110	3	G|1.000;A|0.000	0	0	0	0	0
EEF2K	29904	ucsc.edu;bcgsc.ca	37	16	22291588	22291588	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	EEF2K-856	NM_013302	exon17	c.C1959T	p.G653G	TGAGGGCGGTGAG	.	408	200	219	2	.	3	0	3	0	0
IL21R	50615	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27459983	27459983	+	Silent	SNP	G	G	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	IL21R-660	NM_181079	exon10	c.G1062T	p.T354T	GCTCACGGAGCTA	.	259	65	94	1	.	0	0	0	0	0
POLR2C	5432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57503976	57503976	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	POLR2C-90	NM_032940	exon7	c.G543A	p.G181G	TGCAGGGGTGGCT	.	337	182	185	0	.	47	13	34	0	0
KLHDC4	54758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	87760467	87760467	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	KLHDC4-182	NM_017566	exon7	c.G663A	p.L221L	CGGGGACAGCTTG	.	269	142	102	0	.	9	2	7	0	0
ZNF469	84627	hgsc.bcm.edu	37	16	88496091	88496091	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	.	NM_001127464	exon1	c.G2213T	p.R738L	GTGACCGCAACTA	.	58	4	13	0	.	0	0	0	0	0
WDR81	124997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	1630178	1630178	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	WDR81-91	NM_001163809	exon1	c.C1925G	p.P642R	CCACTCCCTGTGA	.	99	42	61	0	.	7	4	3	0	0
C17orf104	284071	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	42744034	42744034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	C17orf104-22	NM_001145080	exon5	c.C755T	p.T252I	TTCAGACAAATGA	.	190	12	112	0	.	0	0	0	0	0
SLC35B1	10237	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	47781478	47781478	+	Silent	SNP	T	T	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	SLC35B1-90	NM_005827	exon6	c.A639T	p.T213T	CAGCAATGTCGAC	.	433	103	209	1	.	39	32	7	0	0
PRKAR1A	5573	broad.mit.edu;bcgsc.ca	37	17	66526491	66526491	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	PRKAR1A-1141	NM_212472	exon11	c.G1047A	p.K349K	CGTTAAGCTGGAC	.	351	10	194	0	.	122	118	4	0	0
CD300A	11314	broad.mit.edu	37	17	72473598	72473598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	CD300A-92	NM_007261	exon4	c.T557C	p.L186P	CCCTGCTGGCATT	.	169	4	91	0	.	2	2	0	0	0
ZACN	353174	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74076354	74076354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ZACN-90	NM_180990	exon5	c.G393T	p.R131S	CTGGAGGGACCAG	.	294	116	128	1	.	0	0	0	0	0
QRICH2	84074	bcgsc.ca	37	17	74288508	74288508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	QRICH2-94	NM_032134	exon4	c.A1802T	p.D601V	TGCTGATCTGCAC	.	512	27	272	2	.	0	0	0	0	0
RNF152	220441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	59483369	59483369	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	RNF152-226	NM_173557	exon2	c.C328G	p.R110G	GCGCACGCTCCTT	.	78	26	28	0	.	0	0	0	0	0
PSG11	5680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	43519496	43519496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	.	NM_002785	exon4	c.C736A	p.P246T	CTGAAGGGAAAAT	.	102	46	102	0	.	0	0	0	0	0
ZNF415	55786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53612760	53612760	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ZNF415-91	NM_018355	exon4	c.A538T	p.I180L	AAATTATTTGGGG	.	80	29	87	0	.	0	0	0	0	0
NCOA1	8648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	24929447	24929447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	NCOA1-228	NM_147223	exon11	c.G1108A	p.G370R	CACAGTGGGCTTT	.	70	24	71	0	.	0	0	0	0	0
LRPPRC	10128	broad.mit.edu;bcgsc.ca	37	2	44203320	44203320	+	Silent	SNP	T	T	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	LRPPRC-93	NM_133259	exon6	c.A699T	p.A233A	GAATACTGCCTCT	.	60	18	98	1	.	7	3	4	0	0
C2orf81	388963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74642884	74642884	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	.	NM_001145054	exon3	c.C429T	p.P143P	CAGCACGGGCACT	.	169	55	82	0	.	6	4	2	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	EEF1B2-227	NM_021121	exon3	c.A127G	p.S43G	GTGTCCAGCCCAC	.	255	6	156	1	.	192	192	0	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	EEF1B2-227	NM_021121	exon3	c.G135A	p.P45P	CCCACCGCCTGCC	.	255	6	166	1	.	158	158	0	0	0
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	216274676	216274676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	FN1-584	NM_212476	exon14	c.C2103A	p.S701R	GCTGGTGCTGGTG	.	506	121	398	0	.	4	4	0	0	0
SEL1L2	80343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	13868446	13868446	+	Silent	SNP	G	G	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	SEL1L2-70	NM_001271539	exon8	c.C714A	p.A238A	ACTTAGGGCAACT	.	83	21	98	0	.	0	0	0	0	0
ZNF337	26152	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	25656225	25656225	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ZNF337-90	NM_015655	exon5	c.T1699A	p.S567T	CCCCCGAGTGTGT	.	238	86	194	1	.	6	1	5	0	0
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	FRG1B-22	.	.	.	.	TCGACAATGGTCT	.	914	37	828	17	.	31	31	0	0	0
TRPC4AP	26133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33623074	33623074	+	Silent	SNP	A	A	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TRPC4AP-91	NM_199368	exon8	c.T903G	p.L301L	TTTGCAAAGCCGC	.	90	26	115	0	.	15	7	8	0	0
TRPC4AP	26133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33623099	33623099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TRPC4AP-91	NM_199368	exon8	c.G878T	p.S293I	GGAATGCTGAGAA	.	75	20	93	0	.	0	0	0	0	0
TP53TG5	27296	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44005903	44005903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TP53TG5-90	NM_014477	exon3	c.G203T	p.R68M	CAACACCTTTTGG	.	150	45	131	1	.	0	0	0	0	0
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	56140806	56140806	+	Silent	SNP	C	C	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	PCK1-227	NM_002591	exon10	c.C1815A	p.P605P	CCTCCCCTGTGAA	.	151	50	114	0	.	65	25	40	0	0
ZGPAT	84619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62366740	62366740	+	Silent	SNP	T	T	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ZGPAT-90	NM_032527	exon6	c.T1281A	p.P427P	GGCTCCTGGGGCC	.	61	20	58	0	.	37	20	17	0	0
NEFH	4744	bcgsc.ca	37	22	29885458	29885458	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	NEFH-90	NM_021076	exon4	c.A1829C	p.E610A	TGAAGGAAGAAGC	.	247	10	197	0	.	0	0	0	0	0
LGALS2	3957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	37966307	37966307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	LGALS2-154	NM_006498	exon4	c.G362A	p.G121D	AACCCGCCCCTTA	.	174	10	138	0	.	20	18	2	0	0
PNPLA3	80339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	44333050	44333050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	PNPLA3-90	NM_025225	exon6	c.G877A	p.A293T	GCCTTGGCTGTGA	.	133	44	106	0	.	0	0	0	0	0
PDCD6IP	10015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	33840351	33840351	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	PDCD6IP-228	NM_013374	exon1	c.A131C	p.E44A	CGGCGGAGGAGCT	.	111	28	61	0	.	10	7	3	0	0
ARHGEF3	50650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	56766301	56766301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ARHGEF3-228	NM_001128615	exon12	c.G1289T	p.G430V	AGGGAGCCACCCA	.	202	46	133	0	.	8	8	0	0	0
MED12L	116931	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	150877786	150877786	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	MED12L-576	NM_053002	exon7	c.C1005T	p.G335G	CCCTGGCCCCCCC	.	109	53	50	1	.	0	0	0	0	0
SPON2	10417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1164263	1164263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	SPON2-90	NM_012445	exon5	c.G738T	p.Q246H	GGGGCTCTGTCGC	.	124	46	58	0	.	0	0	0	0	0
KIAA1239	57495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	37447380	37447380	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	.	NM_001144990	exon7	c.T3770G	p.F1257C	CTGTGTTTTTTTG	.	261	22	232	0	.	0	0	0	0	0
KLB	152831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	39435931	39435931	+	Silent	SNP	G	G	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	KLB-69	NM_175737	exon2	c.G927T	p.R309R	AAACCGGTCGGAA	.	373	119	307	0	.	0	0	0	0	0
GABRG1	2565	hgsc.bcm.edu;bcgsc.ca	37	4	46043272	46043272	+	Splice_Site	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	GABRG1-92	NM_173536	exon10	c.1132-1G>A	.	AGTCATCTGAGCA	.	70	17	66	0	.	0	0	0	0	0
G3BP2	9908	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76570830	76570830	+	Silent	SNP	A	A	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	G3BP2-153	NM_012297	exon12	c.T1233A	p.A411A	TCTTGCAGCTCTT	.	226	59	204	1	.	14	10	4	0	0
ARHGAP24	83478	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	86916564	86916564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ARHGAP24-227	NM_001025616	exon9	c.G1757A	p.G586E	TTGGGGGGAACTT	.	166	55	153	1	.	16	5	11	0	0
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	126239108	126239108	+	Silent	SNP	T	T	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	FAT4-108	NM_024582	exon1	c.T1542C	p.I514I	CAGCATTGTCTCT	.	147	55	150	0	.	0	0	0	0	0
HAND2	9464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	174450317	174450317	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	HAND2-91	NM_021973	exon1	c.T124A	p.Y42N	GGAAGTAGGGGTT	.	29	7	17	0	.	0	0	0	0	0
WDR17	116966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	177056301	177056301	+	Missense_Mutation	SNP	G	G	A	rs140987021		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	WDR17-95	NM_170710	exon9	c.G1213A	p.D405N	CCTGACGATCCTA	.	190	62	213	0	G|1.000;A|0.000	0	0	0	0	0
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	139876316	139876316	+	Silent	SNP	A	A	G	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ANKHD1-185	NM_017747	exon15	c.A2457G	p.E819E	AGAAGAACTTAAA	.	61	29	80	0	.	6	5	1	0	0
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	150921871	150921871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	FAT2-96	NM_001447	exon9	c.C8817A	p.N2939K	CTGCCTGTTCTGC	.	104	30	91	0	.	0	0	0	0	0
KIF4B	285643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	154395501	154395501	+	Silent	SNP	G	G	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	KIF4B-1	NM_001099293	exon1	c.G2082A	p.Q694Q	CTTCCAGAAACAA	.	320	79	302	0	.	0	0	0	0	0
CASP8AP2	9994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	90577520	90577520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	CASP8AP2-24	NM_001137667	exon8	c.G4511T	p.S1504I	CAAGCAGTAAATC	.	156	44	142	0	.	1	0	1	0	0
FBXO30	84085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	146126628	146126628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	FBXO30-291	NM_032145	exon2	c.G914A	p.G305D	GAATCACCATGTA	.	84	16	77	0	.	1	1	0	0	0
ABCB4	5244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	87037472	87037472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ABCB4-96	NM_018849	exon25	c.G3160A	p.G1054R	TCAGCCCCTGAAG	.	150	30	93	0	.	5	3	2	0	0
LRRD1	401387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	91794441	91794441	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	.	NM_001161528	exon1	c.T76A	p.S26T	TCATTGACTGTGA	.	72	37	48	0	.	0	0	0	0	0
TECPR1	25851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	97847037	97847037	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TECPR1-91	NM_015395	exon25	c.G3351A	p.E1117E	CTTGGGCTCGTGA	.	68	20	15	0	.	8	6	2	0	0
MEPCE	56257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100030705	100030705	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	MEPCE-91	NM_019606	exon2	c.T1835A	p.I612N	GGGGCATCCTGGT	.	367	83	219	0	.	53	35	18	0	0
ELP3	55140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	28047190	28047190	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ELP3-90	NM_018091	exon15	c.G1592C	p.R531T	ATTATAGAAAGAT	.	82	28	78	0	.	12	7	5	0	0
CSMD3	114788	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	113516202	113516202	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	CSMD3-1132	NM_198123	exon30	c.A4900G	p.S1634G	CTATGCTAAAACT	.	32	10	51	0	.	0	0	0	0	0
CSMD3	114788	hgsc.bcm.edu;bcgsc.ca	37	8	113516207	113516207	+	Splice_Site	SNP	C	C	G	rs76670724	alternate_allele	TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	CSMD3-1132	NM_052900	exon30	c.4584-1G>C	.	CTAAAACTGAAAA	.	25	9	42	0	.	0	0	0	0	0
ZNF79	7633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	130206739	130206739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ZNF79-90	NM_007135	exon5	c.T760C	p.C254R	AGTGAATGTGGAA	.	129	35	93	0	.	0	0	0	0	0
TLR7	51284	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	12906681	12906681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TLR7-564	NM_016562	exon3	c.C3054A	p.N1018K	AACAAACCCGCAA	.	59	38	73	1	.	4	4	0	0	0
FAM47A	158724	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	34148836	34148836	+	Silent	SNP	C	C	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	FAM47A-134	NM_203408	exon1	c.G1560A	p.E520E	GGGAGGCTCCGAG	.	79	52	23	1	.	0	0	0	0	0
CD24	100133941	bcgsc.ca	37	Y	21154603	21154603	+	RNA	SNP	A	A	C	rs79788321		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	.	.	.	.	.	TCCCCTACGTCGG	.	22	5	25	0	.	605	0	605	0	0
MKI67	4288	broad.mit.edu	37	10	129905112	129905113	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	MKI67-519	NM_002417	exon13	c.4991_4992del	p.1664_1664del	TGGCTCTGTGTGT	.	184	9	141	0	.	0	0	0	0	0
TUT1	64852	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62343357	62343370	+	Frame_Shift_Del	DEL	GTAAAGGGATCGGC	GTAAAGGGATCGGC	-	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	GTAAAGGGATCGGC	GTAAAGGGATCGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TUT1-91	NM_022830	exon9	c.1935_1948del	p.645_650del	.	.	130	27	145	0	.	0	0	0	0	0
BTBD2	55643	broad.mit.edu	37	19	2015365	2015365	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	BTBD2-92	NM_017797	exon1	c.338delA	p.N113fs	ACCTCGTTGTTGA	.	6	2	6	0	.	0	0	0	0	0
TTL	150465	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	113260589	113260589	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TTL-658	NM_153712	exon5	c.706delA	p.K236fs	.	.	126	31	130	0	.	0	0	0	0	0
GRB14	2888	broad.mit.edu	37	2	165365288	165365288	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	GRB14-420	NM_004490	exon7	c.891delA	p.K297fs	TCCATGTTTTTTT	.	138	10	136	0	.	0	0	0	0	0
GAD1	2571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	171705820	171705820	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	GAD1-91	NM_000817	exon12	c.1144delA	p.M382fs	.	.	138	50	128	0	.	0	0	0	0	0
CENPK	64105	broad.mit.edu;bcgsc.ca	37	5	64824334	64824341	+	Frame_Shift_Del	DEL	CCCAAGGT	CCCAAGGT	-	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	CCCAAGGT	CCCAAGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	CENPK-90	NM_001267038	exon9	c.535_542del	p.179_181del	AACTCGCCCAAGG	.	68	8	115	0	.	0	0	0	0	0
RGMB	285704	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	98115590	98115591	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	.	NM_001012761	exon4	c.566_567del	p.189_189del	.	.	204	65	174	0	.	0	0	0	0	0
SLC25A40	55972	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	87466048	87466048	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	SLC25A40-91	NM_018843	exon11	c.901delT	p.S301fs	.	.	112	21	103	0	.	0	0	0	0	0
TRIM55	84675	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	67064722	67064722	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TRIM55-230	NM_184086	exon8	c.1096delT	p.F366fs	.	.	44	17	55	0	.	0	0	0	0	0
IL9R	3581	broad.mit.edu	37	X	155239822	155239824	+	In_Frame_Del	DEL	CAA	CAA	-	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	CAA	CAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	IL9R-40	NM_002186	exon9	c.1314_1316del	p.438_439del	CAGCAGCAACAAC	.	239	8	116	0	.	0	0	0	0	0
NUP88	4927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	5312151	5312152	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	NUP88-204	NM_002532	exon5	c.759_760insT	p.L253fs	.	.	254	61	162	0	.	0	0	0	0	0
ATP13A1	57130	broad.mit.edu;bcgsc.ca	37	19	19762514	19762515	+	Frame_Shift_Ins	INS	-	-	TGCAGGA	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ATP13A1-138	NM_020410	exon17	c.2319_2320insTCCTGCA	p.Q773fs	GGGAGGCTGCAGG	.	227	36	169	0	.	0	0	0	0	0
SEL1L3	23231	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	25819805	25819806	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	.	NM_015187	exon9	c.1519_1520insA	p.H507fs	.	.	198	49	175	0	.	0	0	0	0	0